Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02876

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02874 and MPMX19_02875 are separated by 264 nucleotidesMPMX19_02875 and MPMX19_02876 are separated by 209 nucleotidesMPMX19_02876 and MPMX19_02877 are separated by 124 nucleotides MPMX19_02874: MPMX19_02874 - HTH-type transcriptional regulator SutR, at 124,279 to 124,875 _02874 MPMX19_02875: MPMX19_02875 - hypothetical protein, at 125,140 to 125,502 _02875 MPMX19_02876: MPMX19_02876 - hypothetical protein, at 125,712 to 126,806 _02876 MPMX19_02877: MPMX19_02877 - ATP-dependent RecD-like DNA helicase, at 126,931 to 128,133 _02877 Position (kb) 125 126 127Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 125.065 kb on + strandat 125.065 kb on + strandat 125.065 kb on + strandat 125.336 kb on + strand, within MPMX19_02875at 125.336 kb on + strand, within MPMX19_02875at 125.336 kb on + strand, within MPMX19_02875at 125.336 kb on + strand, within MPMX19_02875at 125.337 kb on - strand, within MPMX19_02875at 125.337 kb on - strand, within MPMX19_02875at 125.337 kb on - strand, within MPMX19_02875at 125.337 kb on - strand, within MPMX19_02875at 125.409 kb on - strand, within MPMX19_02875at 125.520 kb on + strandat 125.520 kb on + strandat 125.520 kb on + strandat 125.647 kb on + strandat 125.647 kb on + strandat 125.648 kb on - strandat 125.648 kb on - strandat 125.648 kb on - strandat 125.682 kb on + strandat 125.682 kb on + strandat 125.682 kb on + strandat 125.682 kb on + strandat 125.682 kb on + strandat 125.683 kb on - strandat 125.683 kb on - strandat 125.683 kb on - strandat 125.683 kb on - strandat 125.754 kb on - strandat 125.926 kb on - strand, within MPMX19_02876at 126.060 kb on + strand, within MPMX19_02876at 126.061 kb on - strand, within MPMX19_02876at 126.175 kb on + strand, within MPMX19_02876at 126.175 kb on + strand, within MPMX19_02876at 126.175 kb on + strand, within MPMX19_02876at 126.175 kb on + strand, within MPMX19_02876at 126.175 kb on + strand, within MPMX19_02876at 126.175 kb on + strand, within MPMX19_02876at 126.176 kb on - strand, within MPMX19_02876at 126.176 kb on - strand, within MPMX19_02876at 126.176 kb on - strand, within MPMX19_02876at 126.176 kb on - strand, within MPMX19_02876at 126.176 kb on - strand, within MPMX19_02876at 126.176 kb on - strand, within MPMX19_02876at 126.202 kb on + strand, within MPMX19_02876at 126.202 kb on + strand, within MPMX19_02876at 126.203 kb on - strand, within MPMX19_02876at 126.855 kb on - strandat 126.855 kb on - strandat 127.037 kb on + strandat 127.037 kb on + strandat 127.037 kb on + strandat 127.037 kb on + strandat 127.037 kb on + strandat 127.037 kb on + strandat 127.037 kb on + strandat 127.037 kb on + strandat 127.038 kb on - strandat 127.038 kb on - strandat 127.038 kb on - strandat 127.148 kb on + strand, within MPMX19_02877at 127.148 kb on + strand, within MPMX19_02877at 127.149 kb on - strand, within MPMX19_02877at 127.196 kb on + strand, within MPMX19_02877at 127.196 kb on + strand, within MPMX19_02877at 127.196 kb on + strand, within MPMX19_02877at 127.196 kb on + strand, within MPMX19_02877at 127.197 kb on - strand, within MPMX19_02877at 127.197 kb on - strand, within MPMX19_02877at 127.197 kb on - strand, within MPMX19_02877at 127.197 kb on - strand, within MPMX19_02877at 127.442 kb on + strand, within MPMX19_02877at 127.442 kb on + strand, within MPMX19_02877at 127.442 kb on + strand, within MPMX19_02877at 127.442 kb on + strand, within MPMX19_02877at 127.442 kb on + strand, within MPMX19_02877at 127.442 kb on + strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.443 kb on - strand, within MPMX19_02877at 127.662 kb on + strand, within MPMX19_02877at 127.697 kb on + strand, within MPMX19_02877at 127.698 kb on - strand, within MPMX19_02877at 127.698 kb on - strand, within MPMX19_02877at 127.698 kb on - strand, within MPMX19_02877at 127.698 kb on - strand, within MPMX19_02877

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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125,065 + -0.1
125,065 + -1.2
125,065 + -1.2
125,336 + MPMX19_02875 0.54 -0.8
125,336 + MPMX19_02875 0.54 +0.7
125,336 + MPMX19_02875 0.54 +0.3
125,336 + MPMX19_02875 0.54 -1.2
125,337 - MPMX19_02875 0.54 +0.4
125,337 - MPMX19_02875 0.54 +0.1
125,337 - MPMX19_02875 0.54 -1.7
125,337 - MPMX19_02875 0.54 -0.2
125,409 - MPMX19_02875 0.74 -0.3
125,520 + +0.3
125,520 + +0.1
125,520 + -0.5
125,647 + +0.1
125,647 + -0.5
125,648 - -0.4
125,648 - +0.5
125,648 - +0.2
125,682 + -1.2
125,682 + +0.0
125,682 + +0.4
125,682 + +0.1
125,682 + -0.9
125,683 - -0.2
125,683 - -0.3
125,683 - -1.7
125,683 - -0.1
125,754 - -0.2
125,926 - MPMX19_02876 0.20 -1.2
126,060 + MPMX19_02876 0.32 +0.2
126,061 - MPMX19_02876 0.32 -1.5
126,175 + MPMX19_02876 0.42 -1.7
126,175 + MPMX19_02876 0.42 +0.5
126,175 + MPMX19_02876 0.42 +0.1
126,175 + MPMX19_02876 0.42 +1.7
126,175 + MPMX19_02876 0.42 +0.7
126,175 + MPMX19_02876 0.42 -0.9
126,176 - MPMX19_02876 0.42 +0.5
126,176 - MPMX19_02876 0.42 -0.8
126,176 - MPMX19_02876 0.42 -0.1
126,176 - MPMX19_02876 0.42 -0.8
126,176 - MPMX19_02876 0.42 -2.9
126,176 - MPMX19_02876 0.42 -1.3
126,202 + MPMX19_02876 0.45 -0.5
126,202 + MPMX19_02876 0.45 -2.0
126,203 - MPMX19_02876 0.45 +2.2
126,855 - -1.9
126,855 - -1.4
127,037 + +0.5
127,037 + +0.7
127,037 + -0.3
127,037 + +0.7
127,037 + -0.9
127,037 + -0.5
127,037 + -1.2
127,037 + -0.5
127,038 - -0.7
127,038 - -0.5
127,038 - +1.7
127,148 + MPMX19_02877 0.18 -1.7
127,148 + MPMX19_02877 0.18 -2.3
127,149 - MPMX19_02877 0.18 -0.4
127,196 + MPMX19_02877 0.22 -0.3
127,196 + MPMX19_02877 0.22 +0.1
127,196 + MPMX19_02877 0.22 +1.1
127,196 + MPMX19_02877 0.22 -1.3
127,197 - MPMX19_02877 0.22 -0.3
127,197 - MPMX19_02877 0.22 +0.8
127,197 - MPMX19_02877 0.22 -0.2
127,197 - MPMX19_02877 0.22 -1.7
127,442 + MPMX19_02877 0.42 -0.3
127,442 + MPMX19_02877 0.42 -1.3
127,442 + MPMX19_02877 0.42 +0.3
127,442 + MPMX19_02877 0.42 -0.9
127,442 + MPMX19_02877 0.42 +1.1
127,442 + MPMX19_02877 0.42 -1.0
127,443 - MPMX19_02877 0.43 -0.0
127,443 - MPMX19_02877 0.43 +0.7
127,443 - MPMX19_02877 0.43 -0.5
127,443 - MPMX19_02877 0.43 +0.3
127,443 - MPMX19_02877 0.43 -0.1
127,443 - MPMX19_02877 0.43 +0.1
127,443 - MPMX19_02877 0.43 -1.3
127,662 + MPMX19_02877 0.61 +0.7
127,697 + MPMX19_02877 0.64 -0.5
127,698 - MPMX19_02877 0.64 -0.8
127,698 - MPMX19_02877 0.64 -2.0
127,698 - MPMX19_02877 0.64 -0.2
127,698 - MPMX19_02877 0.64 -0.7

Or see this region's nucleotide sequence