Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02866 and MPMX19_02867 are separated by 21 nucleotides MPMX19_02867 and MPMX19_02868 are separated by 369 nucleotides
MPMX19_02866: MPMX19_02866 - 4-hydroxymandelate oxidase, at 110,673 to 111,752
_02866
MPMX19_02867: MPMX19_02867 - hypothetical protein, at 111,774 to 113,450
_02867
MPMX19_02868: MPMX19_02868 - Response regulator protein TmoT, at 113,820 to 114,464
_02868
Position (kb)
111
112
113
114 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 110.896 kb on - strand, within MPMX19_02866 at 110.896 kb on - strand, within MPMX19_02866 at 110.896 kb on - strand, within MPMX19_02866 at 110.896 kb on - strand, within MPMX19_02866 at 111.023 kb on - strand, within MPMX19_02866 at 111.069 kb on + strand, within MPMX19_02866 at 111.070 kb on - strand, within MPMX19_02866 at 111.070 kb on - strand, within MPMX19_02866 at 111.458 kb on + strand, within MPMX19_02866 at 111.598 kb on + strand, within MPMX19_02866 at 111.598 kb on + strand, within MPMX19_02866 at 111.598 kb on + strand, within MPMX19_02866 at 111.598 kb on + strand, within MPMX19_02866 at 111.598 kb on + strand, within MPMX19_02866 at 111.599 kb on - strand, within MPMX19_02866 at 111.599 kb on - strand, within MPMX19_02866 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.403 kb on + strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.404 kb on - strand, within MPMX19_02867 at 112.878 kb on + strand, within MPMX19_02867 at 112.879 kb on - strand, within MPMX19_02867 at 112.879 kb on - strand, within MPMX19_02867 at 112.879 kb on - strand, within MPMX19_02867 at 112.879 kb on - strand, within MPMX19_02867 at 112.879 kb on - strand, within MPMX19_02867 at 112.879 kb on - strand, within MPMX19_02867 at 112.945 kb on + strand, within MPMX19_02867 at 112.945 kb on + strand, within MPMX19_02867 at 112.945 kb on + strand, within MPMX19_02867 at 112.945 kb on + strand, within MPMX19_02867 at 112.945 kb on + strand, within MPMX19_02867 at 112.945 kb on + strand, within MPMX19_02867 at 112.945 kb on + strand, within MPMX19_02867 at 112.945 kb on + strand, within MPMX19_02867 at 112.945 kb on + strand, within MPMX19_02867 at 112.945 kb on + strand, within MPMX19_02867 at 112.945 kb on + strand, within MPMX19_02867 at 112.945 kb on + strand, within MPMX19_02867 at 112.945 kb on + strand, within MPMX19_02867 at 112.945 kb on + strand, within MPMX19_02867 at 112.945 kb on + strand, within MPMX19_02867 at 112.946 kb on - strand, within MPMX19_02867 at 112.946 kb on - strand, within MPMX19_02867 at 112.946 kb on - strand, within MPMX19_02867 at 112.946 kb on - strand, within MPMX19_02867 at 112.946 kb on - strand, within MPMX19_02867 at 112.946 kb on - strand, within MPMX19_02867 at 112.946 kb on - strand, within MPMX19_02867 at 112.946 kb on - strand, within MPMX19_02867 at 112.946 kb on - strand, within MPMX19_02867 at 112.990 kb on + strand, within MPMX19_02867 at 112.990 kb on + strand, within MPMX19_02867 at 112.991 kb on - strand, within MPMX19_02867 at 112.991 kb on - strand, within MPMX19_02867 at 112.991 kb on - strand, within MPMX19_02867 at 112.999 kb on + strand, within MPMX19_02867 at 112.999 kb on + strand, within MPMX19_02867 at 112.999 kb on + strand, within MPMX19_02867 at 112.999 kb on + strand, within MPMX19_02867 at 112.999 kb on + strand, within MPMX19_02867 at 112.999 kb on + strand, within MPMX19_02867 at 113.000 kb on - strand, within MPMX19_02867 at 113.000 kb on - strand, within MPMX19_02867 at 113.035 kb on + strand, within MPMX19_02867 at 113.065 kb on + strand, within MPMX19_02867 at 113.065 kb on + strand, within MPMX19_02867 at 113.269 kb on + strand, within MPMX19_02867 at 113.269 kb on + strand, within MPMX19_02867 at 113.270 kb on - strand, within MPMX19_02867 at 113.270 kb on - strand, within MPMX19_02867 at 113.270 kb on - strand, within MPMX19_02867 at 113.339 kb on - strand at 113.339 kb on - strand at 113.339 kb on - strand at 113.373 kb on - strand at 113.451 kb on - strand at 113.451 kb on - strand at 113.466 kb on + strand at 113.466 kb on + strand at 113.467 kb on - strand at 113.467 kb on - strand at 113.504 kb on + strand at 113.505 kb on - strand at 113.548 kb on + strand at 113.549 kb on - strand at 113.644 kb on + strand at 113.644 kb on + strand at 113.645 kb on - strand at 113.645 kb on - strand at 113.645 kb on - strand at 113.749 kb on + strand at 113.764 kb on - strand at 113.764 kb on - strand at 113.821 kb on + strand at 113.821 kb on + strand at 113.862 kb on + strand at 113.862 kb on + strand at 113.862 kb on + strand at 113.862 kb on + strand at 113.863 kb on - strand at 113.863 kb on - strand at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.325 kb on + strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.326 kb on - strand, within MPMX19_02868 at 114.344 kb on - strand, within MPMX19_02868 at 114.344 kb on - strand, within MPMX19_02868
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 110,896 - MPMX19_02866 0.21 -1.9 110,896 - MPMX19_02866 0.21 +2.4 110,896 - MPMX19_02866 0.21 -0.7 110,896 - MPMX19_02866 0.21 +1.2 111,023 - MPMX19_02866 0.32 -0.3 111,069 + MPMX19_02866 0.37 -0.9 111,070 - MPMX19_02866 0.37 -1.8 111,070 - MPMX19_02866 0.37 -0.7 111,458 + MPMX19_02866 0.73 -0.7 111,598 + MPMX19_02866 0.86 +0.3 111,598 + MPMX19_02866 0.86 -0.5 111,598 + MPMX19_02866 0.86 -0.2 111,598 + MPMX19_02866 0.86 -1.2 111,598 + MPMX19_02866 0.86 +0.2 111,599 - MPMX19_02866 0.86 +0.3 111,599 - MPMX19_02866 0.86 -0.8 112,403 + MPMX19_02867 0.38 -0.9 112,403 + MPMX19_02867 0.38 -2.4 112,403 + MPMX19_02867 0.38 +0.2 112,403 + MPMX19_02867 0.38 -1.5 112,403 + MPMX19_02867 0.38 +0.1 112,403 + MPMX19_02867 0.38 -0.3 112,403 + MPMX19_02867 0.38 +0.8 112,403 + MPMX19_02867 0.38 -2.5 112,403 + MPMX19_02867 0.38 -1.3 112,403 + MPMX19_02867 0.38 +0.7 112,403 + MPMX19_02867 0.38 +0.2 112,404 - MPMX19_02867 0.38 +0.5 112,404 - MPMX19_02867 0.38 -0.1 112,404 - MPMX19_02867 0.38 -0.5 112,404 - MPMX19_02867 0.38 -0.6 112,404 - MPMX19_02867 0.38 +0.8 112,404 - MPMX19_02867 0.38 -2.0 112,404 - MPMX19_02867 0.38 -1.3 112,404 - MPMX19_02867 0.38 -1.4 112,404 - MPMX19_02867 0.38 -0.3 112,404 - MPMX19_02867 0.38 -1.2 112,404 - MPMX19_02867 0.38 -3.6 112,404 - MPMX19_02867 0.38 +1.1 112,404 - MPMX19_02867 0.38 -0.8 112,404 - MPMX19_02867 0.38 -0.7 112,878 + MPMX19_02867 0.66 +0.1 112,879 - MPMX19_02867 0.66 -1.2 112,879 - MPMX19_02867 0.66 -1.7 112,879 - MPMX19_02867 0.66 +0.8 112,879 - MPMX19_02867 0.66 +1.1 112,879 - MPMX19_02867 0.66 +0.1 112,879 - MPMX19_02867 0.66 +1.4 112,945 + MPMX19_02867 0.70 -0.1 112,945 + MPMX19_02867 0.70 +0.1 112,945 + MPMX19_02867 0.70 +0.2 112,945 + MPMX19_02867 0.70 -1.5 112,945 + MPMX19_02867 0.70 -0.9 112,945 + MPMX19_02867 0.70 +0.5 112,945 + MPMX19_02867 0.70 -0.9 112,945 + MPMX19_02867 0.70 -2.2 112,945 + MPMX19_02867 0.70 -0.3 112,945 + MPMX19_02867 0.70 -0.7 112,945 + MPMX19_02867 0.70 -2.2 112,945 + MPMX19_02867 0.70 -1.7 112,945 + MPMX19_02867 0.70 -0.7 112,945 + MPMX19_02867 0.70 -1.2 112,945 + MPMX19_02867 0.70 -0.9 112,946 - MPMX19_02867 0.70 -0.9 112,946 - MPMX19_02867 0.70 +0.4 112,946 - MPMX19_02867 0.70 -1.7 112,946 - MPMX19_02867 0.70 -1.5 112,946 - MPMX19_02867 0.70 +0.1 112,946 - MPMX19_02867 0.70 -0.2 112,946 - MPMX19_02867 0.70 -1.5 112,946 - MPMX19_02867 0.70 +0.7 112,946 - MPMX19_02867 0.70 +0.8 112,990 + MPMX19_02867 0.73 -0.5 112,990 + MPMX19_02867 0.73 +0.1 112,991 - MPMX19_02867 0.73 +0.8 112,991 - MPMX19_02867 0.73 -0.4 112,991 - MPMX19_02867 0.73 -1.3 112,999 + MPMX19_02867 0.73 -1.5 112,999 + MPMX19_02867 0.73 -0.3 112,999 + MPMX19_02867 0.73 +0.1 112,999 + MPMX19_02867 0.73 -0.9 112,999 + MPMX19_02867 0.73 -2.3 112,999 + MPMX19_02867 0.73 -0.2 113,000 - MPMX19_02867 0.73 -0.9 113,000 - MPMX19_02867 0.73 -1.7 113,035 + MPMX19_02867 0.75 -0.8 113,065 + MPMX19_02867 0.77 -2.3 113,065 + MPMX19_02867 0.77 +1.1 113,269 + MPMX19_02867 0.89 +0.1 113,269 + MPMX19_02867 0.89 +0.1 113,270 - MPMX19_02867 0.89 -0.7 113,270 - MPMX19_02867 0.89 -0.0 113,270 - MPMX19_02867 0.89 -1.5 113,339 - +1.1 113,339 - -1.2 113,339 - -0.3 113,373 - -0.5 113,451 - -1.7 113,451 - -2.6 113,466 + -1.5 113,466 + +0.6 113,467 - -0.1 113,467 - -1.7 113,504 + -1.5 113,505 - +0.6 113,548 + -0.5 113,549 - +0.1 113,644 + -1.3 113,644 + -0.5 113,645 - +1.7 113,645 - -0.8 113,645 - -2.5 113,749 + +0.5 113,764 - -0.8 113,764 - +1.1 113,821 + -1.3 113,821 + -1.0 113,862 + -1.2 113,862 + -0.0 113,862 + -1.7 113,862 + -0.0 113,863 - +2.4 113,863 - +0.1 114,325 + MPMX19_02868 0.78 +0.2 114,325 + MPMX19_02868 0.78 +0.7 114,325 + MPMX19_02868 0.78 -0.9 114,325 + MPMX19_02868 0.78 -0.1 114,325 + MPMX19_02868 0.78 -1.1 114,325 + MPMX19_02868 0.78 -0.3 114,325 + MPMX19_02868 0.78 +0.2 114,325 + MPMX19_02868 0.78 -1.3 114,325 + MPMX19_02868 0.78 -0.8 114,325 + MPMX19_02868 0.78 +0.2 114,325 + MPMX19_02868 0.78 +1.3 114,325 + MPMX19_02868 0.78 +1.1 114,325 + MPMX19_02868 0.78 -0.3 114,325 + MPMX19_02868 0.78 +0.3 114,325 + MPMX19_02868 0.78 +1.0 114,326 - MPMX19_02868 0.78 +0.9 114,326 - MPMX19_02868 0.78 -0.3 114,326 - MPMX19_02868 0.78 -0.6 114,326 - MPMX19_02868 0.78 -1.0 114,326 - MPMX19_02868 0.78 -0.7 114,326 - MPMX19_02868 0.78 -0.1 114,326 - MPMX19_02868 0.78 -2.0 114,326 - MPMX19_02868 0.78 -0.6 114,326 - MPMX19_02868 0.78 +0.5 114,326 - MPMX19_02868 0.78 -1.9 114,326 - MPMX19_02868 0.78 +0.2 114,326 - MPMX19_02868 0.78 +0.8 114,326 - MPMX19_02868 0.78 -1.3 114,326 - MPMX19_02868 0.78 -0.5 114,326 - MPMX19_02868 0.78 -0.1 114,344 - MPMX19_02868 0.81 -0.3 114,344 - MPMX19_02868 0.81 +0.1
Or see this region's nucleotide sequence