Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02810

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02809 and MPMX19_02810 overlap by 4 nucleotidesMPMX19_02810 and MPMX19_02811 are separated by 11 nucleotides MPMX19_02809: MPMX19_02809 - D-erythronate kinase, at 44,849 to 46,048 _02809 MPMX19_02810: MPMX19_02810 - D-threonate 4-phosphate dehydrogenase, at 46,045 to 47,079 _02810 MPMX19_02811: MPMX19_02811 - Long-chain-alcohol dehydrogenase 1, at 47,091 to 48,227 _02811 Position (kb) 46 47 48Strain fitness (log2 ratio) -2 -1 0 1at 45.147 kb on - strand, within MPMX19_02809at 45.230 kb on - strand, within MPMX19_02809at 45.230 kb on - strand, within MPMX19_02809at 45.230 kb on - strand, within MPMX19_02809at 46.340 kb on - strand, within MPMX19_02810at 46.439 kb on - strand, within MPMX19_02810at 46.594 kb on + strand, within MPMX19_02810at 46.594 kb on + strand, within MPMX19_02810at 46.595 kb on - strand, within MPMX19_02810at 46.595 kb on - strand, within MPMX19_02810at 46.816 kb on + strand, within MPMX19_02810at 46.816 kb on + strand, within MPMX19_02810at 46.817 kb on - strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.837 kb on + strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 46.838 kb on - strand, within MPMX19_02810at 47.035 kb on + strandat 47.035 kb on + strandat 47.035 kb on + strandat 47.694 kb on + strand, within MPMX19_02811at 47.694 kb on + strand, within MPMX19_02811at 47.695 kb on - strand, within MPMX19_02811at 47.695 kb on - strand, within MPMX19_02811at 47.730 kb on + strand, within MPMX19_02811at 47.731 kb on - strand, within MPMX19_02811at 47.731 kb on - strand, within MPMX19_02811at 47.731 kb on - strand, within MPMX19_02811at 47.731 kb on - strand, within MPMX19_02811at 47.833 kb on - strand, within MPMX19_02811

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
45,147 - MPMX19_02809 0.25 -0.3
45,230 - MPMX19_02809 0.32 -0.2
45,230 - MPMX19_02809 0.32 -0.7
45,230 - MPMX19_02809 0.32 -0.3
46,340 - MPMX19_02810 0.29 +0.7
46,439 - MPMX19_02810 0.38 -0.9
46,594 + MPMX19_02810 0.53 -1.2
46,594 + MPMX19_02810 0.53 +0.2
46,595 - MPMX19_02810 0.53 -0.2
46,595 - MPMX19_02810 0.53 +0.1
46,816 + MPMX19_02810 0.74 -0.5
46,816 + MPMX19_02810 0.74 +1.0
46,817 - MPMX19_02810 0.75 -0.7
46,837 + MPMX19_02810 0.77 -2.3
46,837 + MPMX19_02810 0.77 -0.2
46,837 + MPMX19_02810 0.77 +0.3
46,837 + MPMX19_02810 0.77 -0.8
46,837 + MPMX19_02810 0.77 -1.5
46,837 + MPMX19_02810 0.77 -0.2
46,837 + MPMX19_02810 0.77 -0.7
46,837 + MPMX19_02810 0.77 -1.2
46,837 + MPMX19_02810 0.77 +0.8
46,838 - MPMX19_02810 0.77 -1.5
46,838 - MPMX19_02810 0.77 -0.7
46,838 - MPMX19_02810 0.77 -1.2
46,838 - MPMX19_02810 0.77 +0.9
46,838 - MPMX19_02810 0.77 +1.2
46,838 - MPMX19_02810 0.77 -1.2
46,838 - MPMX19_02810 0.77 -0.7
46,838 - MPMX19_02810 0.77 +0.1
46,838 - MPMX19_02810 0.77 -0.5
46,838 - MPMX19_02810 0.77 +0.5
46,838 - MPMX19_02810 0.77 -0.6
46,838 - MPMX19_02810 0.77 -1.5
46,838 - MPMX19_02810 0.77 +0.7
46,838 - MPMX19_02810 0.77 +0.9
46,838 - MPMX19_02810 0.77 +0.1
46,838 - MPMX19_02810 0.77 -0.1
46,838 - MPMX19_02810 0.77 -0.2
47,035 + +1.0
47,035 + -0.6
47,035 + -0.2
47,694 + MPMX19_02811 0.53 +0.1
47,694 + MPMX19_02811 0.53 -0.9
47,695 - MPMX19_02811 0.53 -1.0
47,695 - MPMX19_02811 0.53 -1.7
47,730 + MPMX19_02811 0.56 -0.4
47,731 - MPMX19_02811 0.56 -0.1
47,731 - MPMX19_02811 0.56 +0.7
47,731 - MPMX19_02811 0.56 -1.7
47,731 - MPMX19_02811 0.56 -0.7
47,833 - MPMX19_02811 0.65 +0.3

Or see this region's nucleotide sequence