Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02794

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02793 and MPMX19_02794 are separated by 36 nucleotidesMPMX19_02794 and MPMX19_02795 are separated by 26 nucleotides MPMX19_02793: MPMX19_02793 - putative quorum-quenching lactonase YtnP, at 27,323 to 28,213 _02793 MPMX19_02794: MPMX19_02794 - hypothetical protein, at 28,250 to 29,839 _02794 MPMX19_02795: MPMX19_02795 - Homoaconitase large subunit, at 29,866 to 31,122 _02795 Position (kb) 28 29 30Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 27.322 kb on + strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.413 kb on + strand, within MPMX19_02793at 27.413 kb on + strand, within MPMX19_02793at 27.414 kb on - strand, within MPMX19_02793at 27.414 kb on - strand, within MPMX19_02793at 27.614 kb on + strand, within MPMX19_02793at 27.614 kb on + strand, within MPMX19_02793at 27.614 kb on + strand, within MPMX19_02793at 27.615 kb on - strand, within MPMX19_02793at 27.615 kb on - strand, within MPMX19_02793at 27.615 kb on - strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.755 kb on + strand, within MPMX19_02793at 27.755 kb on + strand, within MPMX19_02793at 27.755 kb on + strand, within MPMX19_02793at 27.756 kb on - strand, within MPMX19_02793at 27.756 kb on - strand, within MPMX19_02793at 27.756 kb on - strand, within MPMX19_02793at 27.761 kb on + strand, within MPMX19_02793at 27.761 kb on + strand, within MPMX19_02793at 27.761 kb on + strand, within MPMX19_02793at 27.762 kb on - strand, within MPMX19_02793at 27.762 kb on - strand, within MPMX19_02793at 27.762 kb on - strand, within MPMX19_02793at 27.762 kb on - strand, within MPMX19_02793at 27.762 kb on - strand, within MPMX19_02793at 27.762 kb on - strand, within MPMX19_02793at 27.989 kb on + strand, within MPMX19_02793at 27.989 kb on + strand, within MPMX19_02793at 27.990 kb on - strand, within MPMX19_02793at 27.990 kb on - strand, within MPMX19_02793at 28.230 kb on + strandat 28.230 kb on + strandat 28.493 kb on + strand, within MPMX19_02794at 28.493 kb on + strand, within MPMX19_02794at 28.493 kb on + strand, within MPMX19_02794at 28.494 kb on - strand, within MPMX19_02794at 28.494 kb on - strand, within MPMX19_02794at 28.494 kb on - strand, within MPMX19_02794at 28.494 kb on - strand, within MPMX19_02794at 28.494 kb on - strand, within MPMX19_02794at 28.494 kb on - strand, within MPMX19_02794at 28.494 kb on - strand, within MPMX19_02794at 28.505 kb on + strand, within MPMX19_02794at 28.505 kb on + strand, within MPMX19_02794at 28.505 kb on + strand, within MPMX19_02794at 28.505 kb on + strand, within MPMX19_02794at 28.505 kb on + strand, within MPMX19_02794at 28.506 kb on - strand, within MPMX19_02794at 28.506 kb on - strand, within MPMX19_02794at 28.506 kb on - strand, within MPMX19_02794at 28.506 kb on - strand, within MPMX19_02794at 28.506 kb on - strand, within MPMX19_02794at 28.506 kb on - strand, within MPMX19_02794at 28.586 kb on + strand, within MPMX19_02794at 28.586 kb on + strand, within MPMX19_02794at 28.586 kb on + strand, within MPMX19_02794at 28.586 kb on + strand, within MPMX19_02794at 28.587 kb on - strand, within MPMX19_02794at 28.587 kb on - strand, within MPMX19_02794at 28.587 kb on - strand, within MPMX19_02794at 28.587 kb on - strand, within MPMX19_02794at 28.587 kb on - strand, within MPMX19_02794at 28.587 kb on - strand, within MPMX19_02794at 28.587 kb on - strand, within MPMX19_02794at 28.587 kb on - strand, within MPMX19_02794at 28.587 kb on - strand, within MPMX19_02794at 29.495 kb on + strand, within MPMX19_02794at 29.495 kb on + strand, within MPMX19_02794at 29.495 kb on + strand, within MPMX19_02794at 29.495 kb on + strand, within MPMX19_02794at 29.496 kb on - strand, within MPMX19_02794at 29.496 kb on - strand, within MPMX19_02794at 29.496 kb on - strand, within MPMX19_02794at 29.496 kb on - strand, within MPMX19_02794at 29.549 kb on + strand, within MPMX19_02794at 29.549 kb on + strand, within MPMX19_02794at 29.549 kb on + strand, within MPMX19_02794at 29.550 kb on - strand, within MPMX19_02794at 29.550 kb on - strand, within MPMX19_02794at 29.684 kb on + strandat 29.684 kb on + strandat 29.684 kb on + strandat 29.684 kb on + strandat 29.684 kb on + strandat 29.684 kb on + strandat 29.685 kb on - strandat 29.685 kb on - strandat 29.685 kb on - strandat 29.685 kb on - strandat 29.685 kb on - strandat 29.685 kb on - strandat 29.727 kb on - strandat 29.872 kb on + strandat 29.872 kb on + strandat 29.872 kb on + strandat 29.872 kb on + strandat 29.873 kb on - strandat 29.873 kb on - strandat 29.968 kb on + strandat 29.968 kb on + strandat 29.969 kb on - strandat 29.995 kb on + strand, within MPMX19_02795at 29.995 kb on + strand, within MPMX19_02795at 29.996 kb on - strand, within MPMX19_02795at 29.996 kb on - strand, within MPMX19_02795at 29.996 kb on - strand, within MPMX19_02795at 30.072 kb on + strand, within MPMX19_02795at 30.072 kb on + strand, within MPMX19_02795at 30.072 kb on + strand, within MPMX19_02795at 30.072 kb on + strand, within MPMX19_02795at 30.072 kb on + strand, within MPMX19_02795at 30.073 kb on - strand, within MPMX19_02795at 30.073 kb on - strand, within MPMX19_02795at 30.073 kb on - strand, within MPMX19_02795at 30.073 kb on - strand, within MPMX19_02795at 30.073 kb on - strand, within MPMX19_02795at 30.073 kb on - strand, within MPMX19_02795at 30.073 kb on - strand, within MPMX19_02795at 30.199 kb on + strand, within MPMX19_02795at 30.200 kb on - strand, within MPMX19_02795at 30.200 kb on - strand, within MPMX19_02795at 30.571 kb on + strand, within MPMX19_02795at 30.571 kb on + strand, within MPMX19_02795at 30.571 kb on + strand, within MPMX19_02795at 30.572 kb on - strand, within MPMX19_02795at 30.572 kb on - strand, within MPMX19_02795at 30.572 kb on - strand, within MPMX19_02795at 30.631 kb on + strand, within MPMX19_02795at 30.632 kb on - strand, within MPMX19_02795at 30.632 kb on - strand, within MPMX19_02795at 30.632 kb on - strand, within MPMX19_02795at 30.748 kb on + strand, within MPMX19_02795

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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27,322 + -1.3
27,322 + -0.4
27,322 + -2.3
27,322 + -0.5
27,322 + -1.8
27,322 + -1.7
27,322 + -1.2
27,322 + -0.2
27,323 - -0.6
27,323 - -1.0
27,323 - +0.1
27,323 - +0.1
27,323 - +0.2
27,323 - +1.5
27,323 - +1.1
27,323 - -1.3
27,323 - -0.3
27,323 - -0.4
27,323 - -1.8
27,323 - +0.7
27,323 - +1.7
27,323 - -1.7
27,413 + MPMX19_02793 0.10 +0.7
27,413 + MPMX19_02793 0.10 -1.9
27,414 - MPMX19_02793 0.10 -1.4
27,414 - MPMX19_02793 0.10 -0.8
27,614 + MPMX19_02793 0.33 -0.9
27,614 + MPMX19_02793 0.33 +0.0
27,614 + MPMX19_02793 0.33 -0.7
27,615 - MPMX19_02793 0.33 -0.1
27,615 - MPMX19_02793 0.33 +0.3
27,615 - MPMX19_02793 0.33 -1.6
27,681 + MPMX19_02793 0.40 +0.1
27,681 + MPMX19_02793 0.40 -0.9
27,681 + MPMX19_02793 0.40 +0.2
27,681 + MPMX19_02793 0.40 +0.8
27,681 + MPMX19_02793 0.40 -1.3
27,681 + MPMX19_02793 0.40 -0.7
27,681 + MPMX19_02793 0.40 -0.4
27,681 + MPMX19_02793 0.40 +0.4
27,681 + MPMX19_02793 0.40 -0.9
27,681 + MPMX19_02793 0.40 -1.0
27,681 + MPMX19_02793 0.40 -0.7
27,681 + MPMX19_02793 0.40 +0.6
27,681 + MPMX19_02793 0.40 +0.2
27,682 - MPMX19_02793 0.40 -0.7
27,682 - MPMX19_02793 0.40 -1.0
27,682 - MPMX19_02793 0.40 -2.0
27,682 - MPMX19_02793 0.40 -0.6
27,682 - MPMX19_02793 0.40 +0.8
27,682 - MPMX19_02793 0.40 -0.7
27,682 - MPMX19_02793 0.40 -0.9
27,682 - MPMX19_02793 0.40 -0.8
27,682 - MPMX19_02793 0.40 -0.2
27,682 - MPMX19_02793 0.40 +1.1
27,755 + MPMX19_02793 0.48 +0.7
27,755 + MPMX19_02793 0.48 -0.0
27,755 + MPMX19_02793 0.48 -0.7
27,756 - MPMX19_02793 0.49 -0.1
27,756 - MPMX19_02793 0.49 -0.3
27,756 - MPMX19_02793 0.49 -1.1
27,761 + MPMX19_02793 0.49 -0.1
27,761 + MPMX19_02793 0.49 -1.3
27,761 + MPMX19_02793 0.49 -1.8
27,762 - MPMX19_02793 0.49 +0.1
27,762 - MPMX19_02793 0.49 -1.6
27,762 - MPMX19_02793 0.49 +0.7
27,762 - MPMX19_02793 0.49 +0.4
27,762 - MPMX19_02793 0.49 +0.2
27,762 - MPMX19_02793 0.49 -0.9
27,989 + MPMX19_02793 0.75 -0.2
27,989 + MPMX19_02793 0.75 -0.6
27,990 - MPMX19_02793 0.75 +0.1
27,990 - MPMX19_02793 0.75 -2.0
28,230 + -0.1
28,230 + -1.2
28,493 + MPMX19_02794 0.15 +0.7
28,493 + MPMX19_02794 0.15 -2.3
28,493 + MPMX19_02794 0.15 +0.4
28,494 - MPMX19_02794 0.15 +0.7
28,494 - MPMX19_02794 0.15 -0.2
28,494 - MPMX19_02794 0.15 -0.3
28,494 - MPMX19_02794 0.15 +0.3
28,494 - MPMX19_02794 0.15 -1.8
28,494 - MPMX19_02794 0.15 -3.3
28,494 - MPMX19_02794 0.15 -0.3
28,505 + MPMX19_02794 0.16 +0.7
28,505 + MPMX19_02794 0.16 -0.5
28,505 + MPMX19_02794 0.16 +1.1
28,505 + MPMX19_02794 0.16 +3.2
28,505 + MPMX19_02794 0.16 -0.9
28,506 - MPMX19_02794 0.16 -0.7
28,506 - MPMX19_02794 0.16 -0.1
28,506 - MPMX19_02794 0.16 +1.3
28,506 - MPMX19_02794 0.16 -0.7
28,506 - MPMX19_02794 0.16 -0.2
28,506 - MPMX19_02794 0.16 -0.9
28,586 + MPMX19_02794 0.21 +0.7
28,586 + MPMX19_02794 0.21 -0.9
28,586 + MPMX19_02794 0.21 +0.7
28,586 + MPMX19_02794 0.21 -0.5
28,587 - MPMX19_02794 0.21 -0.8
28,587 - MPMX19_02794 0.21 -0.1
28,587 - MPMX19_02794 0.21 -0.3
28,587 - MPMX19_02794 0.21 -0.2
28,587 - MPMX19_02794 0.21 +0.5
28,587 - MPMX19_02794 0.21 +0.5
28,587 - MPMX19_02794 0.21 -1.6
28,587 - MPMX19_02794 0.21 -2.2
28,587 - MPMX19_02794 0.21 +0.9
29,495 + MPMX19_02794 0.78 -0.2
29,495 + MPMX19_02794 0.78 -0.2
29,495 + MPMX19_02794 0.78 +0.2
29,495 + MPMX19_02794 0.78 -0.3
29,496 - MPMX19_02794 0.78 -1.3
29,496 - MPMX19_02794 0.78 +1.1
29,496 - MPMX19_02794 0.78 +0.2
29,496 - MPMX19_02794 0.78 -0.7
29,549 + MPMX19_02794 0.82 -0.0
29,549 + MPMX19_02794 0.82 -1.0
29,549 + MPMX19_02794 0.82 -0.8
29,550 - MPMX19_02794 0.82 -2.6
29,550 - MPMX19_02794 0.82 +0.5
29,684 + +0.5
29,684 + -0.8
29,684 + +0.2
29,684 + -1.0
29,684 + -1.3
29,684 + -0.1
29,685 - +0.2
29,685 - -0.3
29,685 - -0.4
29,685 - +1.1
29,685 - -1.2
29,685 - -0.8
29,727 - -1.1
29,872 + +0.1
29,872 + +0.5
29,872 + -1.0
29,872 + +0.8
29,873 - +0.8
29,873 - -0.2
29,968 + -0.1
29,968 + -1.2
29,969 - +0.8
29,995 + MPMX19_02795 0.10 -0.4
29,995 + MPMX19_02795 0.10 -0.0
29,996 - MPMX19_02795 0.10 -1.0
29,996 - MPMX19_02795 0.10 -0.5
29,996 - MPMX19_02795 0.10 -0.5
30,072 + MPMX19_02795 0.16 -0.5
30,072 + MPMX19_02795 0.16 +1.1
30,072 + MPMX19_02795 0.16 -0.4
30,072 + MPMX19_02795 0.16 -0.5
30,072 + MPMX19_02795 0.16 +1.2
30,073 - MPMX19_02795 0.16 -0.2
30,073 - MPMX19_02795 0.16 +0.2
30,073 - MPMX19_02795 0.16 +0.2
30,073 - MPMX19_02795 0.16 -0.1
30,073 - MPMX19_02795 0.16 -1.8
30,073 - MPMX19_02795 0.16 +0.9
30,073 - MPMX19_02795 0.16 -0.2
30,199 + MPMX19_02795 0.26 -1.0
30,200 - MPMX19_02795 0.27 -0.5
30,200 - MPMX19_02795 0.27 +0.9
30,571 + MPMX19_02795 0.56 +1.1
30,571 + MPMX19_02795 0.56 +0.4
30,571 + MPMX19_02795 0.56 -0.4
30,572 - MPMX19_02795 0.56 -1.2
30,572 - MPMX19_02795 0.56 +0.8
30,572 - MPMX19_02795 0.56 -0.7
30,631 + MPMX19_02795 0.61 -0.8
30,632 - MPMX19_02795 0.61 -0.3
30,632 - MPMX19_02795 0.61 +0.7
30,632 - MPMX19_02795 0.61 -0.6
30,748 + MPMX19_02795 0.70 -2.5

Or see this region's nucleotide sequence