Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02784 and MPMX19_02785 overlap by 4 nucleotides MPMX19_02785 and MPMX19_02786 are separated by 28 nucleotides MPMX19_02786 and MPMX19_02787 overlap by 4 nucleotides
MPMX19_02784: MPMX19_02784 - phosphoglycerate mutase GpmB, at 17,404 to 18,117
_02784
MPMX19_02785: MPMX19_02785 - hypothetical protein, at 18,114 to 18,497
_02785
MPMX19_02786: MPMX19_02786 - hypothetical protein, at 18,526 to 19,581
_02786
MPMX19_02787: MPMX19_02787 - (R)-benzylsuccinyl-CoA dehydrogenase, at 19,578 to 20,774
_02787
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.561 kb on + strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.068 kb on + strand at 18.069 kb on - strand at 18.069 kb on - strand at 18.696 kb on - strand, within MPMX19_02786 at 18.749 kb on + strand, within MPMX19_02786 at 18.749 kb on + strand, within MPMX19_02786 at 18.750 kb on - strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.921 kb on - strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.987 kb on - strand, within MPMX19_02786 at 19.014 kb on - strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.615 kb on + strand at 19.615 kb on + strand at 19.615 kb on + strand at 19.615 kb on + strand at 19.615 kb on + strand at 19.615 kb on + strand at 19.615 kb on + strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.616 kb on - strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.637 kb on + strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.638 kb on - strand at 19.681 kb on + strand at 19.687 kb on + strand at 19.687 kb on + strand at 19.687 kb on + strand at 19.688 kb on - strand at 19.688 kb on - strand at 19.688 kb on - strand at 19.954 kb on + strand, within MPMX19_02787 at 19.954 kb on + strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 19.955 kb on - strand, within MPMX19_02787 at 20.536 kb on + strand, within MPMX19_02787 at 20.536 kb on + strand, within MPMX19_02787 at 20.536 kb on + strand, within MPMX19_02787 at 20.536 kb on + strand, within MPMX19_02787
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 17,561 + MPMX19_02784 0.22 -1.5 17,775 - MPMX19_02784 0.52 +1.2 17,775 - MPMX19_02784 0.52 +0.4 17,775 - MPMX19_02784 0.52 -0.7 17,775 - MPMX19_02784 0.52 -0.3 17,775 - MPMX19_02784 0.52 -0.3 17,775 - MPMX19_02784 0.52 -0.3 17,780 + MPMX19_02784 0.53 -0.8 17,780 + MPMX19_02784 0.53 -1.5 17,780 + MPMX19_02784 0.53 -1.7 17,780 + MPMX19_02784 0.53 +0.5 17,780 + MPMX19_02784 0.53 -0.9 17,780 + MPMX19_02784 0.53 -0.9 17,780 + MPMX19_02784 0.53 -2.4 17,780 + MPMX19_02784 0.53 +0.5 17,780 + MPMX19_02784 0.53 -0.9 17,780 + MPMX19_02784 0.53 -0.7 17,780 + MPMX19_02784 0.53 +1.0 17,780 + MPMX19_02784 0.53 -1.7 17,780 + MPMX19_02784 0.53 -0.5 17,781 - MPMX19_02784 0.53 -0.1 17,781 - MPMX19_02784 0.53 -0.9 17,781 - MPMX19_02784 0.53 +0.4 17,781 - MPMX19_02784 0.53 +0.1 17,781 - MPMX19_02784 0.53 -1.3 17,781 - MPMX19_02784 0.53 -0.3 17,781 - MPMX19_02784 0.53 -1.8 17,781 - MPMX19_02784 0.53 +2.7 17,781 - MPMX19_02784 0.53 -2.0 18,038 + MPMX19_02784 0.89 +1.4 18,038 + MPMX19_02784 0.89 -1.3 18,038 + MPMX19_02784 0.89 +1.4 18,038 + MPMX19_02784 0.89 -1.0 18,038 + MPMX19_02784 0.89 +1.2 18,038 + MPMX19_02784 0.89 -0.4 18,038 + MPMX19_02784 0.89 -0.5 18,039 - MPMX19_02784 0.89 -2.9 18,039 - MPMX19_02784 0.89 -0.3 18,039 - MPMX19_02784 0.89 -0.0 18,039 - MPMX19_02784 0.89 +0.8 18,039 - MPMX19_02784 0.89 -3.5 18,039 - MPMX19_02784 0.89 +0.4 18,039 - MPMX19_02784 0.89 -1.3 18,068 + +1.7 18,069 - +0.2 18,069 - +0.3 18,696 - MPMX19_02786 0.16 +0.5 18,749 + MPMX19_02786 0.21 -1.2 18,749 + MPMX19_02786 0.21 -0.9 18,750 - MPMX19_02786 0.21 +0.5 18,903 + MPMX19_02786 0.36 -1.3 18,903 + MPMX19_02786 0.36 -1.0 18,903 + MPMX19_02786 0.36 +0.0 18,903 + MPMX19_02786 0.36 -0.2 18,903 + MPMX19_02786 0.36 -0.2 18,903 + MPMX19_02786 0.36 -0.3 18,903 + MPMX19_02786 0.36 +0.9 18,903 + MPMX19_02786 0.36 +0.1 18,903 + MPMX19_02786 0.36 -1.2 18,904 - MPMX19_02786 0.36 -0.5 18,904 - MPMX19_02786 0.36 -0.7 18,904 - MPMX19_02786 0.36 -0.9 18,904 - MPMX19_02786 0.36 +0.3 18,904 - MPMX19_02786 0.36 -0.9 18,904 - MPMX19_02786 0.36 +0.1 18,904 - MPMX19_02786 0.36 -1.5 18,905 + MPMX19_02786 0.36 +0.9 18,905 + MPMX19_02786 0.36 -1.2 18,905 + MPMX19_02786 0.36 +0.1 18,905 + MPMX19_02786 0.36 +0.1 18,905 + MPMX19_02786 0.36 -0.7 18,905 + MPMX19_02786 0.36 +0.4 18,905 + MPMX19_02786 0.36 -0.8 18,905 + MPMX19_02786 0.36 -0.4 18,905 + MPMX19_02786 0.36 -1.5 18,905 + MPMX19_02786 0.36 -1.2 18,905 + MPMX19_02786 0.36 -0.9 18,905 + MPMX19_02786 0.36 -0.7 18,905 + MPMX19_02786 0.36 -1.8 18,905 + MPMX19_02786 0.36 +0.3 18,905 + MPMX19_02786 0.36 +0.9 18,905 + MPMX19_02786 0.36 -1.7 18,905 + MPMX19_02786 0.36 +0.2 18,905 + MPMX19_02786 0.36 +0.5 18,905 + MPMX19_02786 0.36 -1.2 18,905 + MPMX19_02786 0.36 +0.8 18,905 + MPMX19_02786 0.36 -1.6 18,905 + MPMX19_02786 0.36 -1.5 18,906 - MPMX19_02786 0.36 -0.9 18,906 - MPMX19_02786 0.36 -1.0 18,906 - MPMX19_02786 0.36 +0.1 18,906 - MPMX19_02786 0.36 -1.3 18,906 - MPMX19_02786 0.36 -0.0 18,906 - MPMX19_02786 0.36 +0.1 18,906 - MPMX19_02786 0.36 -0.7 18,906 - MPMX19_02786 0.36 +0.3 18,906 - MPMX19_02786 0.36 -1.9 18,906 - MPMX19_02786 0.36 +0.4 18,906 - MPMX19_02786 0.36 -1.2 18,906 - MPMX19_02786 0.36 +0.3 18,906 - MPMX19_02786 0.36 -0.9 18,906 - MPMX19_02786 0.36 -1.3 18,906 - MPMX19_02786 0.36 -0.1 18,906 - MPMX19_02786 0.36 +0.5 18,906 - MPMX19_02786 0.36 -0.5 18,906 - MPMX19_02786 0.36 -0.7 18,906 - MPMX19_02786 0.36 +0.1 18,906 - MPMX19_02786 0.36 -2.3 18,906 - MPMX19_02786 0.36 +0.2 18,906 - MPMX19_02786 0.36 -0.7 18,906 - MPMX19_02786 0.36 -1.0 18,906 - MPMX19_02786 0.36 -0.4 18,906 - MPMX19_02786 0.36 +0.8 18,906 - MPMX19_02786 0.36 -0.2 18,906 - MPMX19_02786 0.36 -0.9 18,906 - MPMX19_02786 0.36 -1.2 18,921 - MPMX19_02786 0.37 -0.9 18,986 + MPMX19_02786 0.44 -1.9 18,986 + MPMX19_02786 0.44 -1.0 18,986 + MPMX19_02786 0.44 -0.2 18,986 + MPMX19_02786 0.44 -0.2 18,987 - MPMX19_02786 0.44 -0.0 19,014 - MPMX19_02786 0.46 -1.3 19,223 + MPMX19_02786 0.66 +0.7 19,223 + MPMX19_02786 0.66 -0.8 19,223 + MPMX19_02786 0.66 -1.3 19,223 + MPMX19_02786 0.66 -0.2 19,223 + MPMX19_02786 0.66 -1.2 19,223 + MPMX19_02786 0.66 -1.1 19,223 + MPMX19_02786 0.66 -0.7 19,223 + MPMX19_02786 0.66 +0.4 19,223 + MPMX19_02786 0.66 +0.1 19,223 + MPMX19_02786 0.66 -1.5 19,223 + MPMX19_02786 0.66 -0.2 19,223 + MPMX19_02786 0.66 +1.4 19,224 - MPMX19_02786 0.66 -0.7 19,224 - MPMX19_02786 0.66 +0.4 19,224 - MPMX19_02786 0.66 -0.9 19,224 - MPMX19_02786 0.66 -1.4 19,224 - MPMX19_02786 0.66 -0.2 19,224 - MPMX19_02786 0.66 -1.8 19,224 - MPMX19_02786 0.66 -0.7 19,615 + +0.4 19,615 + +0.3 19,615 + -1.8 19,615 + -0.7 19,615 + +0.7 19,615 + -1.2 19,615 + -1.3 19,616 - +0.7 19,616 - -1.0 19,616 - -0.2 19,616 - +0.2 19,616 - -0.8 19,616 - -0.5 19,616 - +0.1 19,616 - -0.7 19,637 + +1.7 19,637 + -1.4 19,637 + -0.2 19,637 + -1.0 19,637 + -0.5 19,637 + +0.4 19,637 + -1.3 19,637 + -0.1 19,637 + +0.6 19,637 + +0.7 19,637 + -1.7 19,637 + -1.3 19,638 - +0.7 19,638 - +0.8 19,638 - -0.5 19,638 - +0.5 19,638 - +1.7 19,638 - -0.3 19,638 - -2.0 19,638 - -1.2 19,638 - +0.3 19,638 - -0.7 19,638 - -1.7 19,638 - -0.3 19,638 - +0.5 19,638 - -0.4 19,681 + -0.7 19,687 + -0.9 19,687 + +0.7 19,687 + -0.9 19,688 - -1.3 19,688 - +1.0 19,688 - -0.7 19,954 + MPMX19_02787 0.31 -0.7 19,954 + MPMX19_02787 0.31 -1.2 19,955 - MPMX19_02787 0.31 -0.0 19,955 - MPMX19_02787 0.31 +0.6 19,955 - MPMX19_02787 0.31 -0.5 19,955 - MPMX19_02787 0.31 +0.6 19,955 - MPMX19_02787 0.31 -0.9 19,955 - MPMX19_02787 0.31 -0.8 19,955 - MPMX19_02787 0.31 -0.4 20,536 + MPMX19_02787 0.80 -0.3 20,536 + MPMX19_02787 0.80 +0.8 20,536 + MPMX19_02787 0.80 -1.0 20,536 + MPMX19_02787 0.80 -1.2
Or see this region's nucleotide sequence