Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02319 and MPMX19_02320 are separated by 195 nucleotides MPMX19_02320 and MPMX19_02321 are separated by 140 nucleotides MPMX19_02321 and MPMX19_02322 are separated by 366 nucleotides
MPMX19_02319: MPMX19_02319 - hypothetical protein, at 2,439,246 to 2,440,463
_02319
MPMX19_02320: MPMX19_02320 - HTH-type transcriptional regulator GltR, at 2,440,659 to 2,441,603
_02320
MPMX19_02321: MPMX19_02321 - Ferredoxin-2, at 2,441,744 to 2,442,073
_02321
MPMX19_02322: MPMX19_02322 - RNA polymerase-binding transcription factor CarD, at 2,442,440 to 2,442,940
_02322
Position (kb)
2440
2441
2442 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2439.781 kb on + strand, within MPMX19_02319 at 2439.781 kb on + strand, within MPMX19_02319 at 2439.781 kb on + strand, within MPMX19_02319 at 2439.781 kb on + strand, within MPMX19_02319 at 2439.781 kb on + strand, within MPMX19_02319 at 2439.781 kb on + strand, within MPMX19_02319 at 2439.781 kb on + strand, within MPMX19_02319 at 2439.781 kb on + strand, within MPMX19_02319 at 2439.781 kb on + strand, within MPMX19_02319 at 2439.782 kb on - strand, within MPMX19_02319 at 2439.782 kb on - strand, within MPMX19_02319 at 2439.782 kb on - strand, within MPMX19_02319 at 2439.782 kb on - strand, within MPMX19_02319 at 2439.782 kb on - strand, within MPMX19_02319 at 2439.802 kb on + strand, within MPMX19_02319 at 2439.802 kb on + strand, within MPMX19_02319 at 2439.802 kb on + strand, within MPMX19_02319 at 2439.803 kb on - strand, within MPMX19_02319 at 2439.803 kb on - strand, within MPMX19_02319 at 2439.803 kb on - strand, within MPMX19_02319 at 2439.803 kb on - strand, within MPMX19_02319 at 2439.887 kb on + strand, within MPMX19_02319 at 2439.887 kb on + strand, within MPMX19_02319 at 2439.888 kb on - strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on - strand, within MPMX19_02319 at 2440.049 kb on - strand, within MPMX19_02319 at 2440.049 kb on - strand, within MPMX19_02319 at 2440.049 kb on - strand, within MPMX19_02319 at 2440.049 kb on - strand, within MPMX19_02319 at 2440.049 kb on - strand, within MPMX19_02319 at 2440.049 kb on - strand, within MPMX19_02319 at 2440.049 kb on - strand, within MPMX19_02319 at 2440.049 kb on - strand, within MPMX19_02319 at 2440.249 kb on + strand, within MPMX19_02319 at 2440.249 kb on + strand, within MPMX19_02319 at 2440.249 kb on + strand, within MPMX19_02319 at 2440.249 kb on + strand, within MPMX19_02319 at 2440.249 kb on + strand, within MPMX19_02319 at 2440.249 kb on + strand, within MPMX19_02319 at 2440.249 kb on + strand, within MPMX19_02319 at 2440.250 kb on - strand, within MPMX19_02319 at 2440.250 kb on - strand, within MPMX19_02319 at 2440.250 kb on - strand, within MPMX19_02319 at 2440.250 kb on - strand, within MPMX19_02319 at 2440.250 kb on - strand, within MPMX19_02319 at 2440.250 kb on - strand, within MPMX19_02319 at 2440.250 kb on - strand, within MPMX19_02319 at 2440.250 kb on - strand, within MPMX19_02319 at 2440.250 kb on - strand, within MPMX19_02319 at 2440.250 kb on - strand, within MPMX19_02319 at 2440.309 kb on + strand, within MPMX19_02319 at 2440.309 kb on + strand, within MPMX19_02319 at 2440.309 kb on + strand, within MPMX19_02319 at 2440.310 kb on - strand, within MPMX19_02319 at 2440.310 kb on - strand, within MPMX19_02319 at 2440.310 kb on - strand, within MPMX19_02319 at 2440.310 kb on - strand, within MPMX19_02319 at 2440.310 kb on - strand, within MPMX19_02319 at 2440.318 kb on + strand, within MPMX19_02319 at 2440.318 kb on + strand, within MPMX19_02319 at 2440.318 kb on + strand, within MPMX19_02319 at 2440.318 kb on + strand, within MPMX19_02319 at 2440.318 kb on + strand, within MPMX19_02319 at 2440.318 kb on + strand, within MPMX19_02319 at 2440.318 kb on + strand, within MPMX19_02319 at 2440.318 kb on + strand, within MPMX19_02319 at 2440.318 kb on + strand, within MPMX19_02319 at 2440.318 kb on + strand, within MPMX19_02319 at 2440.318 kb on + strand, within MPMX19_02319 at 2440.318 kb on + strand, within MPMX19_02319 at 2440.318 kb on + strand, within MPMX19_02319 at 2440.318 kb on + strand, within MPMX19_02319 at 2440.318 kb on + strand, within MPMX19_02319 at 2440.318 kb on + strand, within MPMX19_02319 at 2440.318 kb on + strand, within MPMX19_02319 at 2440.319 kb on - strand, within MPMX19_02319 at 2440.319 kb on - strand, within MPMX19_02319 at 2440.319 kb on - strand, within MPMX19_02319 at 2440.319 kb on - strand, within MPMX19_02319 at 2440.319 kb on - strand, within MPMX19_02319 at 2440.319 kb on - strand, within MPMX19_02319 at 2440.319 kb on - strand, within MPMX19_02319 at 2440.319 kb on - strand, within MPMX19_02319 at 2440.319 kb on - strand, within MPMX19_02319 at 2440.319 kb on - strand, within MPMX19_02319 at 2440.319 kb on - strand, within MPMX19_02319 at 2440.319 kb on - strand, within MPMX19_02319 at 2440.319 kb on - strand, within MPMX19_02319 at 2440.319 kb on - strand, within MPMX19_02319 at 2440.319 kb on - strand, within MPMX19_02319 at 2440.319 kb on - strand, within MPMX19_02319 at 2440.319 kb on - strand, within MPMX19_02319 at 2440.319 kb on - strand, within MPMX19_02319 at 2440.319 kb on - strand, within MPMX19_02319 at 2440.485 kb on + strand at 2440.603 kb on + strand at 2440.857 kb on + strand, within MPMX19_02320 at 2440.858 kb on - strand, within MPMX19_02320 at 2440.858 kb on - strand, within MPMX19_02320 at 2441.229 kb on + strand, within MPMX19_02320 at 2441.230 kb on - strand, within MPMX19_02320 at 2441.601 kb on + strand at 2441.601 kb on + strand at 2441.601 kb on + strand at 2441.601 kb on + strand at 2441.601 kb on + strand at 2441.601 kb on + strand at 2441.601 kb on + strand at 2441.601 kb on + strand at 2441.601 kb on + strand at 2441.648 kb on + strand at 2441.648 kb on + strand at 2441.648 kb on + strand at 2441.648 kb on + strand at 2441.648 kb on + strand at 2441.648 kb on + strand at 2441.648 kb on + strand at 2441.648 kb on + strand at 2442.082 kb on + strand at 2442.082 kb on + strand at 2442.082 kb on + strand at 2442.082 kb on + strand at 2442.082 kb on + strand at 2442.082 kb on + strand at 2442.082 kb on + strand at 2442.082 kb on + strand at 2442.082 kb on + strand at 2442.082 kb on + strand at 2442.082 kb on + strand at 2442.082 kb on + strand at 2442.082 kb on + strand at 2442.082 kb on + strand at 2442.082 kb on + strand at 2442.082 kb on + strand at 2442.082 kb on + strand at 2442.082 kb on + strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.083 kb on - strand at 2442.110 kb on + strand at 2442.111 kb on - strand at 2442.161 kb on + strand at 2442.161 kb on + strand at 2442.161 kb on + strand at 2442.162 kb on - strand at 2442.233 kb on + strand at 2442.233 kb on + strand at 2442.233 kb on + strand at 2442.233 kb on + strand at 2442.253 kb on + strand at 2442.253 kb on + strand at 2442.255 kb on + strand at 2442.255 kb on + strand at 2442.255 kb on + strand at 2442.361 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 2,439,781 + MPMX19_02319 0.44 -0.3 2,439,781 + MPMX19_02319 0.44 -0.3 2,439,781 + MPMX19_02319 0.44 +0.8 2,439,781 + MPMX19_02319 0.44 -0.6 2,439,781 + MPMX19_02319 0.44 +0.6 2,439,781 + MPMX19_02319 0.44 -1.1 2,439,781 + MPMX19_02319 0.44 -1.2 2,439,781 + MPMX19_02319 0.44 -0.8 2,439,781 + MPMX19_02319 0.44 -0.9 2,439,782 - MPMX19_02319 0.44 +0.0 2,439,782 - MPMX19_02319 0.44 +0.3 2,439,782 - MPMX19_02319 0.44 -0.9 2,439,782 - MPMX19_02319 0.44 +0.8 2,439,782 - MPMX19_02319 0.44 -0.8 2,439,802 + MPMX19_02319 0.46 +0.7 2,439,802 + MPMX19_02319 0.46 -2.0 2,439,802 + MPMX19_02319 0.46 -0.4 2,439,803 - MPMX19_02319 0.46 +1.5 2,439,803 - MPMX19_02319 0.46 -0.8 2,439,803 - MPMX19_02319 0.46 +0.1 2,439,803 - MPMX19_02319 0.46 -0.2 2,439,887 + MPMX19_02319 0.53 +0.9 2,439,887 + MPMX19_02319 0.53 +1.1 2,439,888 - MPMX19_02319 0.53 +0.5 2,440,048 + MPMX19_02319 0.66 -1.5 2,440,048 + MPMX19_02319 0.66 +0.8 2,440,048 + MPMX19_02319 0.66 -0.5 2,440,048 + MPMX19_02319 0.66 +0.2 2,440,048 + MPMX19_02319 0.66 -1.5 2,440,048 + MPMX19_02319 0.66 +0.2 2,440,048 + MPMX19_02319 0.66 +0.4 2,440,048 + MPMX19_02319 0.66 -0.9 2,440,048 + MPMX19_02319 0.66 -2.8 2,440,048 + MPMX19_02319 0.66 +0.5 2,440,048 + MPMX19_02319 0.66 -0.2 2,440,048 + MPMX19_02319 0.66 -1.4 2,440,048 + MPMX19_02319 0.66 -1.8 2,440,048 + MPMX19_02319 0.66 -0.1 2,440,048 - MPMX19_02319 0.66 +0.8 2,440,049 - MPMX19_02319 0.66 -2.1 2,440,049 - MPMX19_02319 0.66 -0.4 2,440,049 - MPMX19_02319 0.66 -1.5 2,440,049 - MPMX19_02319 0.66 +0.4 2,440,049 - MPMX19_02319 0.66 +0.8 2,440,049 - MPMX19_02319 0.66 +0.2 2,440,049 - MPMX19_02319 0.66 -0.4 2,440,049 - MPMX19_02319 0.66 -0.9 2,440,249 + MPMX19_02319 0.82 -0.5 2,440,249 + MPMX19_02319 0.82 -1.9 2,440,249 + MPMX19_02319 0.82 -1.8 2,440,249 + MPMX19_02319 0.82 +1.3 2,440,249 + MPMX19_02319 0.82 +1.1 2,440,249 + MPMX19_02319 0.82 -1.2 2,440,249 + MPMX19_02319 0.82 +0.2 2,440,250 - MPMX19_02319 0.82 +0.2 2,440,250 - MPMX19_02319 0.82 -0.8 2,440,250 - MPMX19_02319 0.82 -1.4 2,440,250 - MPMX19_02319 0.82 -1.3 2,440,250 - MPMX19_02319 0.82 -1.2 2,440,250 - MPMX19_02319 0.82 +0.4 2,440,250 - MPMX19_02319 0.82 -1.9 2,440,250 - MPMX19_02319 0.82 -0.9 2,440,250 - MPMX19_02319 0.82 -0.5 2,440,250 - MPMX19_02319 0.82 +1.1 2,440,309 + MPMX19_02319 0.87 -0.7 2,440,309 + MPMX19_02319 0.87 -0.8 2,440,309 + MPMX19_02319 0.87 +0.0 2,440,310 - MPMX19_02319 0.87 -1.0 2,440,310 - MPMX19_02319 0.87 -1.6 2,440,310 - MPMX19_02319 0.87 +0.6 2,440,310 - MPMX19_02319 0.87 -0.3 2,440,310 - MPMX19_02319 0.87 -1.9 2,440,318 + MPMX19_02319 0.88 -1.2 2,440,318 + MPMX19_02319 0.88 -1.2 2,440,318 + MPMX19_02319 0.88 -0.8 2,440,318 + MPMX19_02319 0.88 -0.1 2,440,318 + MPMX19_02319 0.88 -0.6 2,440,318 + MPMX19_02319 0.88 -0.4 2,440,318 + MPMX19_02319 0.88 +0.0 2,440,318 + MPMX19_02319 0.88 +0.0 2,440,318 + MPMX19_02319 0.88 -1.4 2,440,318 + MPMX19_02319 0.88 -0.3 2,440,318 + MPMX19_02319 0.88 -1.8 2,440,318 + MPMX19_02319 0.88 -1.4 2,440,318 + MPMX19_02319 0.88 -0.4 2,440,318 + MPMX19_02319 0.88 -0.5 2,440,318 + MPMX19_02319 0.88 -1.5 2,440,318 + MPMX19_02319 0.88 -2.2 2,440,318 + MPMX19_02319 0.88 -0.6 2,440,319 - MPMX19_02319 0.88 +0.8 2,440,319 - MPMX19_02319 0.88 -1.5 2,440,319 - MPMX19_02319 0.88 -1.3 2,440,319 - MPMX19_02319 0.88 +0.4 2,440,319 - MPMX19_02319 0.88 +1.0 2,440,319 - MPMX19_02319 0.88 -1.1 2,440,319 - MPMX19_02319 0.88 -1.0 2,440,319 - MPMX19_02319 0.88 -0.5 2,440,319 - MPMX19_02319 0.88 -0.1 2,440,319 - MPMX19_02319 0.88 +1.6 2,440,319 - MPMX19_02319 0.88 -1.1 2,440,319 - MPMX19_02319 0.88 +0.2 2,440,319 - MPMX19_02319 0.88 -1.2 2,440,319 - MPMX19_02319 0.88 -1.2 2,440,319 - MPMX19_02319 0.88 -0.6 2,440,319 - MPMX19_02319 0.88 -0.8 2,440,319 - MPMX19_02319 0.88 +0.7 2,440,319 - MPMX19_02319 0.88 -0.6 2,440,319 - MPMX19_02319 0.88 -0.1 2,440,485 + -1.1 2,440,603 + +0.4 2,440,857 + MPMX19_02320 0.21 -0.1 2,440,858 - MPMX19_02320 0.21 -0.6 2,440,858 - MPMX19_02320 0.21 -0.8 2,441,229 + MPMX19_02320 0.60 -1.2 2,441,230 - MPMX19_02320 0.60 -0.6 2,441,601 + -0.3 2,441,601 + +0.7 2,441,601 + -0.6 2,441,601 + -1.0 2,441,601 + -1.0 2,441,601 + -0.1 2,441,601 + -1.9 2,441,601 + -1.8 2,441,601 + +0.4 2,441,648 + -0.2 2,441,648 + -1.9 2,441,648 + -0.1 2,441,648 + -0.5 2,441,648 + -0.2 2,441,648 + +0.1 2,441,648 + +0.5 2,441,648 + -1.2 2,442,082 + -1.2 2,442,082 + +0.1 2,442,082 + -0.6 2,442,082 + -1.5 2,442,082 + -0.7 2,442,082 + +0.8 2,442,082 + +0.1 2,442,082 + -0.8 2,442,082 + -1.2 2,442,082 + +0.1 2,442,082 + -1.7 2,442,082 + -1.6 2,442,082 + -1.5 2,442,082 + -0.8 2,442,082 + -2.9 2,442,082 + -0.8 2,442,082 + -0.1 2,442,082 + -1.2 2,442,083 - +1.8 2,442,083 - +0.1 2,442,083 - -0.6 2,442,083 - -0.8 2,442,083 - -0.6 2,442,083 - +0.2 2,442,083 - -1.4 2,442,083 - +1.5 2,442,083 - +0.2 2,442,083 - +0.3 2,442,083 - +0.6 2,442,083 - +0.4 2,442,083 - +0.6 2,442,083 - +0.5 2,442,083 - -0.2 2,442,083 - -1.8 2,442,083 - -1.2 2,442,083 - -1.6 2,442,083 - -1.8 2,442,083 - +0.7 2,442,083 - -0.5 2,442,083 - -0.2 2,442,083 - +0.2 2,442,083 - +0.2 2,442,110 + -0.4 2,442,111 - -2.1 2,442,161 + -0.5 2,442,161 + +0.1 2,442,161 + +1.3 2,442,162 - -1.3 2,442,233 + -1.5 2,442,233 + +0.4 2,442,233 + -1.3 2,442,233 + +1.2 2,442,253 + -0.2 2,442,253 + -0.7 2,442,255 + +0.5 2,442,255 + -1.2 2,442,255 + +0.1 2,442,361 + -1.0
Or see this region's nucleotide sequence