Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02107 and MPMX19_02108 are separated by 105 nucleotides MPMX19_02108 and MPMX19_02109 are separated by 17 nucleotides MPMX19_02109 and MPMX19_02110 overlap by 4 nucleotides
MPMX19_02107: MPMX19_02107 - Primosomal protein N', at 2,204,353 to 2,206,659
_02107
MPMX19_02108: MPMX19_02108 - Transaldolase, at 2,206,765 to 2,207,421
_02108
MPMX19_02109: MPMX19_02109 - hypothetical protein, at 2,207,439 to 2,208,161
_02109
MPMX19_02110: MPMX19_02110 - Tyrosine recombinase XerC, at 2,208,158 to 2,209,108
_02110
Position (kb)
2207
2208
2209 Strain fitness (log2 ratio)
-1
0
1
2 at 2207.419 kb on + strand at 2207.419 kb on + strand at 2207.419 kb on + strand at 2207.419 kb on + strand at 2207.419 kb on + strand at 2207.419 kb on + strand at 2207.514 kb on + strand, within MPMX19_02109 at 2207.514 kb on + strand, within MPMX19_02109 at 2207.514 kb on + strand, within MPMX19_02109 at 2207.514 kb on + strand, within MPMX19_02109 at 2207.964 kb on + strand, within MPMX19_02109 at 2207.964 kb on + strand, within MPMX19_02109 at 2207.964 kb on + strand, within MPMX19_02109 at 2207.964 kb on + strand, within MPMX19_02109 at 2207.964 kb on + strand, within MPMX19_02109 at 2207.964 kb on + strand, within MPMX19_02109 at 2207.964 kb on + strand, within MPMX19_02109 at 2207.964 kb on + strand, within MPMX19_02109 at 2207.964 kb on + strand, within MPMX19_02109 at 2207.964 kb on + strand, within MPMX19_02109 at 2207.964 kb on + strand, within MPMX19_02109 at 2207.964 kb on + strand, within MPMX19_02109 at 2207.964 kb on + strand, within MPMX19_02109 at 2207.964 kb on + strand, within MPMX19_02109 at 2207.965 kb on - strand, within MPMX19_02109 at 2207.965 kb on - strand, within MPMX19_02109 at 2208.272 kb on + strand, within MPMX19_02110 at 2209.123 kb on - strand at 2209.136 kb on + strand at 2209.137 kb on - strand at 2209.139 kb on + strand at 2209.139 kb on + strand at 2209.139 kb on + strand at 2209.140 kb on - strand at 2209.140 kb on - strand at 2209.154 kb on + strand at 2209.154 kb on + strand at 2209.160 kb on + strand at 2209.160 kb on + strand at 2209.160 kb on + strand at 2209.161 kb on - strand at 2209.161 kb on - strand at 2209.161 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 2,207,419 + +0.1 2,207,419 + -0.9 2,207,419 + -0.9 2,207,419 + -1.6 2,207,419 + +1.2 2,207,419 + +0.6 2,207,514 + MPMX19_02109 0.10 -0.7 2,207,514 + MPMX19_02109 0.10 +0.6 2,207,514 + MPMX19_02109 0.10 -1.4 2,207,514 + MPMX19_02109 0.10 +1.2 2,207,964 + MPMX19_02109 0.73 +0.3 2,207,964 + MPMX19_02109 0.73 -0.4 2,207,964 + MPMX19_02109 0.73 -0.1 2,207,964 + MPMX19_02109 0.73 +0.4 2,207,964 + MPMX19_02109 0.73 -0.1 2,207,964 + MPMX19_02109 0.73 +0.6 2,207,964 + MPMX19_02109 0.73 +0.6 2,207,964 + MPMX19_02109 0.73 +0.1 2,207,964 + MPMX19_02109 0.73 -0.2 2,207,964 + MPMX19_02109 0.73 +0.8 2,207,964 + MPMX19_02109 0.73 +2.1 2,207,964 + MPMX19_02109 0.73 -0.1 2,207,964 + MPMX19_02109 0.73 -0.7 2,207,964 + MPMX19_02109 0.73 -0.7 2,207,965 - MPMX19_02109 0.73 -0.1 2,207,965 - MPMX19_02109 0.73 -0.8 2,208,272 + MPMX19_02110 0.12 -0.2 2,209,123 - -0.3 2,209,136 + +0.4 2,209,137 - +0.5 2,209,139 + +0.3 2,209,139 + -0.4 2,209,139 + +0.9 2,209,140 - -0.1 2,209,140 - -0.4 2,209,154 + +1.8 2,209,154 + -0.6 2,209,160 + -1.3 2,209,160 + +0.2 2,209,160 + +0.4 2,209,161 - +0.6 2,209,161 - -1.0 2,209,161 - +1.4
Or see this region's nucleotide sequence