Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02102 and MPMX19_02103 are separated by 85 nucleotides MPMX19_02103 and MPMX19_02104 overlap by 1 nucleotides MPMX19_02104 and MPMX19_02105 are separated by 383 nucleotides
MPMX19_02102: MPMX19_02102 - ATP synthase gamma chain, at 2,199,678 to 2,200,562
_02102
MPMX19_02103: MPMX19_02103 - ATP synthase subunit alpha, at 2,200,648 to 2,202,177
_02103
MPMX19_02104: MPMX19_02104 - ATP synthase subunit delta, at 2,202,177 to 2,202,746
_02104
MPMX19_02105: MPMX19_02105 - hypothetical protein, at 2,203,130 to 2,203,525
_02105
Position (kb)
2200
2201
2202
2203 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2200.607 kb on - strand at 2200.607 kb on - strand at 2202.969 kb on + strand at 2202.995 kb on + strand at 2202.995 kb on + strand at 2202.995 kb on + strand at 2202.995 kb on + strand at 2202.995 kb on + strand at 2202.996 kb on - strand at 2202.996 kb on - strand at 2202.996 kb on - strand at 2202.996 kb on - strand at 2203.006 kb on + strand at 2203.006 kb on + strand at 2203.006 kb on + strand at 2203.006 kb on + strand at 2203.007 kb on - strand at 2203.007 kb on - strand at 2203.007 kb on - strand at 2203.007 kb on - strand at 2203.007 kb on - strand at 2203.017 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 2,200,607 - +0.2 2,200,607 - +0.1 2,202,969 + -0.6 2,202,995 + +1.8 2,202,995 + -0.8 2,202,995 + -0.7 2,202,995 + +0.5 2,202,995 + -1.4 2,202,996 - -1.7 2,202,996 - -2.2 2,202,996 - -0.8 2,202,996 - -0.8 2,203,006 + -0.5 2,203,006 + +0.4 2,203,006 + -0.2 2,203,006 + -0.9 2,203,007 - -1.2 2,203,007 - +0.5 2,203,007 - -1.4 2,203,007 - -0.0 2,203,007 - -0.5 2,203,017 + -1.2
Or see this region's nucleotide sequence