Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02004 and MPMX19_02005 are separated by 6 nucleotides MPMX19_02005 and MPMX19_02006 are separated by 5 nucleotides MPMX19_02006 and MPMX19_02007 are separated by 47 nucleotides MPMX19_02007 and MPMX19_02008 are separated by 141 nucleotides
MPMX19_02004: MPMX19_02004 - hypothetical protein, at 2,093,112 to 2,094,077
_02004
MPMX19_02005: MPMX19_02005 - tRNA pseudouridine synthase A, at 2,094,084 to 2,094,821
_02005
MPMX19_02006: MPMX19_02006 - Methionyl-tRNA formyltransferase, at 2,094,827 to 2,095,783
_02006
MPMX19_02007: MPMX19_02007 - Peptide deformylase 1, at 2,095,831 to 2,096,343
_02007
MPMX19_02008: MPMX19_02008 - Adenosylcobinamide-GDP ribazoletransferase, at 2,096,485 to 2,097,321
_02008
Position (kb)
2094
2095
2096 Strain fitness (log2 ratio)
-2
-1
0
1 at 2093.883 kb on + strand, within MPMX19_02004 at 2093.883 kb on + strand, within MPMX19_02004 at 2093.883 kb on + strand, within MPMX19_02004 at 2093.883 kb on + strand, within MPMX19_02004 at 2093.883 kb on + strand, within MPMX19_02004 at 2093.883 kb on + strand, within MPMX19_02004 at 2093.884 kb on - strand, within MPMX19_02004 at 2093.884 kb on - strand, within MPMX19_02004 at 2093.884 kb on - strand, within MPMX19_02004 at 2093.884 kb on - strand, within MPMX19_02004 at 2093.884 kb on - strand, within MPMX19_02004 at 2093.884 kb on - strand, within MPMX19_02004 at 2093.884 kb on - strand, within MPMX19_02004 at 2093.884 kb on - strand, within MPMX19_02004 at 2093.884 kb on - strand, within MPMX19_02004 at 2093.884 kb on - strand, within MPMX19_02004 at 2093.884 kb on - strand, within MPMX19_02004 at 2093.884 kb on - strand, within MPMX19_02004 at 2094.088 kb on + strand at 2094.089 kb on - strand at 2094.107 kb on - strand at 2094.490 kb on + strand, within MPMX19_02005 at 2094.491 kb on - strand, within MPMX19_02005 at 2095.793 kb on - strand at 2095.793 kb on - strand at 2095.793 kb on - strand at 2096.361 kb on - strand at 2096.386 kb on - strand at 2096.421 kb on + strand at 2096.421 kb on + strand at 2096.421 kb on + strand at 2096.421 kb on + strand at 2096.421 kb on + strand at 2096.421 kb on + strand at 2096.421 kb on + strand at 2096.422 kb on - strand at 2096.422 kb on - strand at 2096.422 kb on - strand at 2096.422 kb on - strand at 2096.422 kb on - strand at 2096.422 kb on - strand at 2096.422 kb on - strand at 2096.422 kb on - strand at 2096.422 kb on - strand at 2096.422 kb on - strand at 2096.479 kb on + strand at 2096.479 kb on + strand at 2096.479 kb on + strand at 2096.479 kb on + strand at 2096.479 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 2,093,883 + MPMX19_02004 0.80 -0.3 2,093,883 + MPMX19_02004 0.80 -0.3 2,093,883 + MPMX19_02004 0.80 -0.9 2,093,883 + MPMX19_02004 0.80 -1.1 2,093,883 + MPMX19_02004 0.80 +0.9 2,093,883 + MPMX19_02004 0.80 -1.4 2,093,884 - MPMX19_02004 0.80 +0.5 2,093,884 - MPMX19_02004 0.80 +1.4 2,093,884 - MPMX19_02004 0.80 -0.3 2,093,884 - MPMX19_02004 0.80 -0.8 2,093,884 - MPMX19_02004 0.80 -1.3 2,093,884 - MPMX19_02004 0.80 -0.7 2,093,884 - MPMX19_02004 0.80 -0.0 2,093,884 - MPMX19_02004 0.80 -0.1 2,093,884 - MPMX19_02004 0.80 -0.9 2,093,884 - MPMX19_02004 0.80 -0.6 2,093,884 - MPMX19_02004 0.80 +1.5 2,093,884 - MPMX19_02004 0.80 -0.2 2,094,088 + +0.3 2,094,089 - -1.0 2,094,107 - -1.1 2,094,490 + MPMX19_02005 0.55 -1.1 2,094,491 - MPMX19_02005 0.55 +1.0 2,095,793 - -1.4 2,095,793 - -0.0 2,095,793 - +0.1 2,096,361 - -0.9 2,096,386 - -0.4 2,096,421 + +0.0 2,096,421 + +0.6 2,096,421 + -1.1 2,096,421 + +0.4 2,096,421 + -0.9 2,096,421 + +0.7 2,096,421 + -0.8 2,096,422 - -2.0 2,096,422 - -0.6 2,096,422 - -0.3 2,096,422 - +0.3 2,096,422 - -0.2 2,096,422 - +0.1 2,096,422 - -0.2 2,096,422 - -1.0 2,096,422 - +0.4 2,096,422 - +0.3 2,096,479 + -0.7 2,096,479 + -0.2 2,096,479 + -0.3 2,096,479 + +1.1 2,096,479 + -0.3
Or see this region's nucleotide sequence