Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01954 and MPMX19_01955 are separated by 51 nucleotides MPMX19_01955 and MPMX19_01956 are separated by 5 nucleotides MPMX19_01956 and MPMX19_01957 overlap by 4 nucleotides
MPMX19_01954: MPMX19_01954 - hypothetical protein, at 2,036,554 to 2,037,702
_01954
MPMX19_01955: MPMX19_01955 - Putative anti-sigma factor antagonist, at 2,037,754 to 2,038,059
_01955
MPMX19_01956: MPMX19_01956 - hypothetical protein, at 2,038,065 to 2,038,859
_01956
MPMX19_01957: MPMX19_01957 - Sensor histidine kinase RcsC, at 2,038,856 to 2,040,118
_01957
Position (kb)
2038
2039 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2037.687 kb on + strand at 2037.687 kb on + strand at 2037.687 kb on + strand at 2037.687 kb on + strand at 2037.687 kb on + strand at 2037.687 kb on + strand at 2037.687 kb on + strand at 2037.688 kb on - strand at 2037.688 kb on - strand at 2037.688 kb on - strand at 2037.688 kb on - strand at 2037.688 kb on - strand at 2037.700 kb on + strand at 2037.700 kb on + strand at 2037.700 kb on + strand at 2037.700 kb on + strand at 2037.700 kb on + strand at 2037.701 kb on - strand at 2037.721 kb on + strand at 2037.721 kb on + strand at 2037.721 kb on + strand at 2037.721 kb on + strand at 2037.721 kb on + strand at 2037.721 kb on + strand at 2037.721 kb on + strand at 2037.721 kb on + strand at 2037.721 kb on + strand at 2037.721 kb on + strand at 2037.721 kb on + strand at 2037.721 kb on + strand at 2037.721 kb on + strand at 2037.721 kb on + strand at 2037.722 kb on - strand at 2037.722 kb on - strand at 2037.722 kb on - strand at 2037.722 kb on - strand at 2037.722 kb on - strand at 2037.722 kb on - strand at 2037.722 kb on - strand at 2037.754 kb on - strand at 2037.754 kb on - strand at 2037.754 kb on - strand at 2037.754 kb on - strand at 2037.754 kb on - strand at 2037.754 kb on - strand at 2037.754 kb on - strand at 2037.754 kb on - strand at 2037.754 kb on - strand at 2037.760 kb on + strand at 2037.761 kb on - strand at 2037.761 kb on - strand at 2037.836 kb on + strand, within MPMX19_01955 at 2037.836 kb on + strand, within MPMX19_01955 at 2037.837 kb on - strand, within MPMX19_01955 at 2037.837 kb on - strand, within MPMX19_01955 at 2038.395 kb on + strand, within MPMX19_01956 at 2038.395 kb on + strand, within MPMX19_01956 at 2038.395 kb on + strand, within MPMX19_01956 at 2038.395 kb on + strand, within MPMX19_01956 at 2038.395 kb on + strand, within MPMX19_01956 at 2038.395 kb on + strand, within MPMX19_01956 at 2038.395 kb on + strand, within MPMX19_01956 at 2038.396 kb on - strand, within MPMX19_01956 at 2038.396 kb on - strand, within MPMX19_01956 at 2038.396 kb on - strand, within MPMX19_01956 at 2038.396 kb on - strand, within MPMX19_01956 at 2038.396 kb on - strand, within MPMX19_01956 at 2038.708 kb on + strand, within MPMX19_01956 at 2038.709 kb on - strand, within MPMX19_01956 at 2038.709 kb on - strand, within MPMX19_01956 at 2038.876 kb on + strand at 2038.876 kb on + strand at 2038.876 kb on + strand at 2038.876 kb on + strand at 2038.876 kb on + strand at 2038.876 kb on + strand at 2038.876 kb on + strand at 2038.876 kb on + strand at 2038.877 kb on - strand at 2038.877 kb on - strand at 2038.877 kb on - strand at 2038.877 kb on - strand at 2038.877 kb on - strand at 2038.877 kb on - strand at 2038.972 kb on + strand at 2038.972 kb on + strand at 2038.972 kb on + strand at 2038.972 kb on + strand at 2038.972 kb on + strand at 2038.972 kb on + strand at 2038.972 kb on + strand at 2038.972 kb on + strand at 2038.972 kb on + strand at 2038.972 kb on + strand at 2038.972 kb on + strand at 2038.972 kb on + strand at 2038.972 kb on + strand at 2038.972 kb on + strand at 2038.973 kb on - strand at 2038.973 kb on - strand at 2038.973 kb on - strand at 2038.973 kb on - strand at 2038.973 kb on - strand at 2038.973 kb on - strand at 2038.973 kb on - strand at 2038.973 kb on - strand at 2039.375 kb on + strand, within MPMX19_01957 at 2039.375 kb on + strand, within MPMX19_01957 at 2039.376 kb on - strand, within MPMX19_01957 at 2039.376 kb on - strand, within MPMX19_01957 at 2039.376 kb on - strand, within MPMX19_01957 at 2039.376 kb on - strand, within MPMX19_01957 at 2039.567 kb on + strand, within MPMX19_01957 at 2039.567 kb on + strand, within MPMX19_01957 at 2039.567 kb on + strand, within MPMX19_01957 at 2039.567 kb on + strand, within MPMX19_01957 at 2039.567 kb on + strand, within MPMX19_01957 at 2039.567 kb on + strand, within MPMX19_01957 at 2039.567 kb on + strand, within MPMX19_01957 at 2039.567 kb on + strand, within MPMX19_01957 at 2039.567 kb on + strand, within MPMX19_01957 at 2039.567 kb on + strand, within MPMX19_01957 at 2039.568 kb on - strand, within MPMX19_01957 at 2039.568 kb on - strand, within MPMX19_01957 at 2039.568 kb on - strand, within MPMX19_01957 at 2039.568 kb on - strand, within MPMX19_01957 at 2039.568 kb on - strand, within MPMX19_01957 at 2039.568 kb on - strand, within MPMX19_01957 at 2039.568 kb on - strand, within MPMX19_01957 at 2039.568 kb on - strand, within MPMX19_01957 at 2039.568 kb on - strand, within MPMX19_01957 at 2039.568 kb on - strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.741 kb on + strand, within MPMX19_01957 at 2039.742 kb on - strand, within MPMX19_01957 at 2039.742 kb on - strand, within MPMX19_01957 at 2039.742 kb on - strand, within MPMX19_01957 at 2039.742 kb on - strand, within MPMX19_01957 at 2039.742 kb on - strand, within MPMX19_01957 at 2039.742 kb on - strand, within MPMX19_01957 at 2039.742 kb on - strand, within MPMX19_01957 at 2039.742 kb on - strand, within MPMX19_01957 at 2039.742 kb on - strand, within MPMX19_01957 at 2039.742 kb on - strand, within MPMX19_01957 at 2039.742 kb on - strand, within MPMX19_01957 at 2039.742 kb on - strand, within MPMX19_01957 at 2039.742 kb on - strand, within MPMX19_01957 at 2039.742 kb on - strand, within MPMX19_01957 at 2039.742 kb on - strand, within MPMX19_01957 at 2039.742 kb on - strand, within MPMX19_01957 at 2039.742 kb on - strand, within MPMX19_01957 at 2039.742 kb on - strand, within MPMX19_01957 at 2039.742 kb on - strand, within MPMX19_01957
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 2,037,687 + -0.5 2,037,687 + -0.9 2,037,687 + -1.7 2,037,687 + -0.6 2,037,687 + +0.6 2,037,687 + +0.1 2,037,687 + -0.6 2,037,688 - -1.1 2,037,688 - -1.6 2,037,688 - -0.5 2,037,688 - -2.2 2,037,688 - +2.2 2,037,700 + -1.0 2,037,700 + +0.8 2,037,700 + -2.8 2,037,700 + -2.3 2,037,700 + -1.1 2,037,701 - -0.9 2,037,721 + -1.4 2,037,721 + -0.2 2,037,721 + -0.5 2,037,721 + -1.2 2,037,721 + +0.4 2,037,721 + -0.4 2,037,721 + -0.4 2,037,721 + -1.3 2,037,721 + -0.4 2,037,721 + +0.9 2,037,721 + +0.3 2,037,721 + -1.3 2,037,721 + -0.7 2,037,721 + +0.3 2,037,722 - -1.2 2,037,722 - -0.6 2,037,722 - -0.9 2,037,722 - -1.6 2,037,722 - -1.3 2,037,722 - -1.1 2,037,722 - -1.3 2,037,754 - -0.5 2,037,754 - +0.1 2,037,754 - -0.3 2,037,754 - -0.5 2,037,754 - -0.8 2,037,754 - +0.1 2,037,754 - +0.1 2,037,754 - -0.3 2,037,754 - -1.3 2,037,760 + -0.5 2,037,761 - -0.9 2,037,761 - -1.1 2,037,836 + MPMX19_01955 0.27 +0.4 2,037,836 + MPMX19_01955 0.27 -1.5 2,037,837 - MPMX19_01955 0.27 -1.7 2,037,837 - MPMX19_01955 0.27 -0.6 2,038,395 + MPMX19_01956 0.42 +0.0 2,038,395 + MPMX19_01956 0.42 +0.7 2,038,395 + MPMX19_01956 0.42 -0.5 2,038,395 + MPMX19_01956 0.42 +1.7 2,038,395 + MPMX19_01956 0.42 +0.1 2,038,395 + MPMX19_01956 0.42 -0.7 2,038,395 + MPMX19_01956 0.42 +0.7 2,038,396 - MPMX19_01956 0.42 -1.0 2,038,396 - MPMX19_01956 0.42 -1.5 2,038,396 - MPMX19_01956 0.42 -0.1 2,038,396 - MPMX19_01956 0.42 +0.1 2,038,396 - MPMX19_01956 0.42 -0.3 2,038,708 + MPMX19_01956 0.81 -1.7 2,038,709 - MPMX19_01956 0.81 -0.8 2,038,709 - MPMX19_01956 0.81 +0.1 2,038,876 + -0.6 2,038,876 + +0.6 2,038,876 + -0.0 2,038,876 + +0.4 2,038,876 + +0.1 2,038,876 + +0.5 2,038,876 + +1.1 2,038,876 + +0.3 2,038,877 - -0.4 2,038,877 - +0.7 2,038,877 - +0.7 2,038,877 - +0.2 2,038,877 - -0.2 2,038,877 - -0.1 2,038,972 + -1.7 2,038,972 + -0.0 2,038,972 + -0.1 2,038,972 + -0.1 2,038,972 + -1.3 2,038,972 + -0.2 2,038,972 + -1.7 2,038,972 + -0.6 2,038,972 + +0.3 2,038,972 + +0.0 2,038,972 + -0.7 2,038,972 + +0.7 2,038,972 + +0.9 2,038,972 + -0.7 2,038,973 - -2.4 2,038,973 - -1.0 2,038,973 - -1.3 2,038,973 - -0.4 2,038,973 - +0.1 2,038,973 - -0.6 2,038,973 - +0.5 2,038,973 - -1.9 2,039,375 + MPMX19_01957 0.41 +0.8 2,039,375 + MPMX19_01957 0.41 -0.9 2,039,376 - MPMX19_01957 0.41 +0.6 2,039,376 - MPMX19_01957 0.41 +0.4 2,039,376 - MPMX19_01957 0.41 -2.2 2,039,376 - MPMX19_01957 0.41 +0.3 2,039,567 + MPMX19_01957 0.56 -0.6 2,039,567 + MPMX19_01957 0.56 +0.8 2,039,567 + MPMX19_01957 0.56 +0.4 2,039,567 + MPMX19_01957 0.56 -0.1 2,039,567 + MPMX19_01957 0.56 -0.3 2,039,567 + MPMX19_01957 0.56 -0.6 2,039,567 + MPMX19_01957 0.56 +0.5 2,039,567 + MPMX19_01957 0.56 -0.8 2,039,567 + MPMX19_01957 0.56 -0.2 2,039,567 + MPMX19_01957 0.56 -0.0 2,039,568 - MPMX19_01957 0.56 -0.4 2,039,568 - MPMX19_01957 0.56 -0.9 2,039,568 - MPMX19_01957 0.56 -0.7 2,039,568 - MPMX19_01957 0.56 -0.0 2,039,568 - MPMX19_01957 0.56 +0.5 2,039,568 - MPMX19_01957 0.56 -1.0 2,039,568 - MPMX19_01957 0.56 +0.2 2,039,568 - MPMX19_01957 0.56 +0.4 2,039,568 - MPMX19_01957 0.56 -0.6 2,039,568 - MPMX19_01957 0.56 +1.1 2,039,741 + MPMX19_01957 0.70 +0.3 2,039,741 + MPMX19_01957 0.70 -0.6 2,039,741 + MPMX19_01957 0.70 +0.1 2,039,741 + MPMX19_01957 0.70 -0.5 2,039,741 + MPMX19_01957 0.70 +0.1 2,039,741 + MPMX19_01957 0.70 -0.3 2,039,741 + MPMX19_01957 0.70 -0.7 2,039,741 + MPMX19_01957 0.70 +0.7 2,039,741 + MPMX19_01957 0.70 -0.6 2,039,741 + MPMX19_01957 0.70 -0.0 2,039,741 + MPMX19_01957 0.70 -1.4 2,039,741 + MPMX19_01957 0.70 -0.3 2,039,741 + MPMX19_01957 0.70 +0.5 2,039,741 + MPMX19_01957 0.70 -0.2 2,039,741 + MPMX19_01957 0.70 +0.5 2,039,741 + MPMX19_01957 0.70 -0.3 2,039,741 + MPMX19_01957 0.70 +0.5 2,039,741 + MPMX19_01957 0.70 -0.7 2,039,741 + MPMX19_01957 0.70 +0.7 2,039,741 + MPMX19_01957 0.70 +0.1 2,039,741 + MPMX19_01957 0.70 -0.6 2,039,741 + MPMX19_01957 0.70 -0.8 2,039,741 + MPMX19_01957 0.70 +0.5 2,039,741 + MPMX19_01957 0.70 -1.6 2,039,741 + MPMX19_01957 0.70 -1.8 2,039,742 - MPMX19_01957 0.70 +1.7 2,039,742 - MPMX19_01957 0.70 -0.6 2,039,742 - MPMX19_01957 0.70 +1.1 2,039,742 - MPMX19_01957 0.70 +1.5 2,039,742 - MPMX19_01957 0.70 -0.4 2,039,742 - MPMX19_01957 0.70 +0.5 2,039,742 - MPMX19_01957 0.70 -0.8 2,039,742 - MPMX19_01957 0.70 -1.3 2,039,742 - MPMX19_01957 0.70 -1.0 2,039,742 - MPMX19_01957 0.70 -0.9 2,039,742 - MPMX19_01957 0.70 -0.3 2,039,742 - MPMX19_01957 0.70 -0.5 2,039,742 - MPMX19_01957 0.70 -0.6 2,039,742 - MPMX19_01957 0.70 +0.0 2,039,742 - MPMX19_01957 0.70 +0.5 2,039,742 - MPMX19_01957 0.70 -1.0 2,039,742 - MPMX19_01957 0.70 -0.7 2,039,742 - MPMX19_01957 0.70 -0.1 2,039,742 - MPMX19_01957 0.70 +1.7
Or see this region's nucleotide sequence