Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01956

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01954 and MPMX19_01955 are separated by 51 nucleotidesMPMX19_01955 and MPMX19_01956 are separated by 5 nucleotidesMPMX19_01956 and MPMX19_01957 overlap by 4 nucleotides MPMX19_01954: MPMX19_01954 - hypothetical protein, at 2,036,554 to 2,037,702 _01954 MPMX19_01955: MPMX19_01955 - Putative anti-sigma factor antagonist, at 2,037,754 to 2,038,059 _01955 MPMX19_01956: MPMX19_01956 - hypothetical protein, at 2,038,065 to 2,038,859 _01956 MPMX19_01957: MPMX19_01957 - Sensor histidine kinase RcsC, at 2,038,856 to 2,040,118 _01957 Position (kb) 2038 2039Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2037.687 kb on + strandat 2037.687 kb on + strandat 2037.687 kb on + strandat 2037.687 kb on + strandat 2037.687 kb on + strandat 2037.687 kb on + strandat 2037.687 kb on + strandat 2037.688 kb on - strandat 2037.688 kb on - strandat 2037.688 kb on - strandat 2037.688 kb on - strandat 2037.688 kb on - strandat 2037.700 kb on + strandat 2037.700 kb on + strandat 2037.700 kb on + strandat 2037.700 kb on + strandat 2037.700 kb on + strandat 2037.701 kb on - strandat 2037.721 kb on + strandat 2037.721 kb on + strandat 2037.721 kb on + strandat 2037.721 kb on + strandat 2037.721 kb on + strandat 2037.721 kb on + strandat 2037.721 kb on + strandat 2037.721 kb on + strandat 2037.721 kb on + strandat 2037.721 kb on + strandat 2037.721 kb on + strandat 2037.721 kb on + strandat 2037.721 kb on + strandat 2037.721 kb on + strandat 2037.722 kb on - strandat 2037.722 kb on - strandat 2037.722 kb on - strandat 2037.722 kb on - strandat 2037.722 kb on - strandat 2037.722 kb on - strandat 2037.722 kb on - strandat 2037.754 kb on - strandat 2037.754 kb on - strandat 2037.754 kb on - strandat 2037.754 kb on - strandat 2037.754 kb on - strandat 2037.754 kb on - strandat 2037.754 kb on - strandat 2037.754 kb on - strandat 2037.754 kb on - strandat 2037.760 kb on + strandat 2037.761 kb on - strandat 2037.761 kb on - strandat 2037.836 kb on + strand, within MPMX19_01955at 2037.836 kb on + strand, within MPMX19_01955at 2037.837 kb on - strand, within MPMX19_01955at 2037.837 kb on - strand, within MPMX19_01955at 2038.395 kb on + strand, within MPMX19_01956at 2038.395 kb on + strand, within MPMX19_01956at 2038.395 kb on + strand, within MPMX19_01956at 2038.395 kb on + strand, within MPMX19_01956at 2038.395 kb on + strand, within MPMX19_01956at 2038.395 kb on + strand, within MPMX19_01956at 2038.395 kb on + strand, within MPMX19_01956at 2038.396 kb on - strand, within MPMX19_01956at 2038.396 kb on - strand, within MPMX19_01956at 2038.396 kb on - strand, within MPMX19_01956at 2038.396 kb on - strand, within MPMX19_01956at 2038.396 kb on - strand, within MPMX19_01956at 2038.708 kb on + strand, within MPMX19_01956at 2038.709 kb on - strand, within MPMX19_01956at 2038.709 kb on - strand, within MPMX19_01956at 2038.876 kb on + strandat 2038.876 kb on + strandat 2038.876 kb on + strandat 2038.876 kb on + strandat 2038.876 kb on + strandat 2038.876 kb on + strandat 2038.876 kb on + strandat 2038.876 kb on + strandat 2038.877 kb on - strandat 2038.877 kb on - strandat 2038.877 kb on - strandat 2038.877 kb on - strandat 2038.877 kb on - strandat 2038.877 kb on - strandat 2038.972 kb on + strandat 2038.972 kb on + strandat 2038.972 kb on + strandat 2038.972 kb on + strandat 2038.972 kb on + strandat 2038.972 kb on + strandat 2038.972 kb on + strandat 2038.972 kb on + strandat 2038.972 kb on + strandat 2038.972 kb on + strandat 2038.972 kb on + strandat 2038.972 kb on + strandat 2038.972 kb on + strandat 2038.972 kb on + strandat 2038.973 kb on - strandat 2038.973 kb on - strandat 2038.973 kb on - strandat 2038.973 kb on - strandat 2038.973 kb on - strandat 2038.973 kb on - strandat 2038.973 kb on - strandat 2038.973 kb on - strandat 2039.375 kb on + strand, within MPMX19_01957at 2039.375 kb on + strand, within MPMX19_01957at 2039.376 kb on - strand, within MPMX19_01957at 2039.376 kb on - strand, within MPMX19_01957at 2039.376 kb on - strand, within MPMX19_01957at 2039.376 kb on - strand, within MPMX19_01957at 2039.567 kb on + strand, within MPMX19_01957at 2039.567 kb on + strand, within MPMX19_01957at 2039.567 kb on + strand, within MPMX19_01957at 2039.567 kb on + strand, within MPMX19_01957at 2039.567 kb on + strand, within MPMX19_01957at 2039.567 kb on + strand, within MPMX19_01957at 2039.567 kb on + strand, within MPMX19_01957at 2039.567 kb on + strand, within MPMX19_01957at 2039.567 kb on + strand, within MPMX19_01957at 2039.567 kb on + strand, within MPMX19_01957at 2039.568 kb on - strand, within MPMX19_01957at 2039.568 kb on - strand, within MPMX19_01957at 2039.568 kb on - strand, within MPMX19_01957at 2039.568 kb on - strand, within MPMX19_01957at 2039.568 kb on - strand, within MPMX19_01957at 2039.568 kb on - strand, within MPMX19_01957at 2039.568 kb on - strand, within MPMX19_01957at 2039.568 kb on - strand, within MPMX19_01957at 2039.568 kb on - strand, within MPMX19_01957at 2039.568 kb on - strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.741 kb on + strand, within MPMX19_01957at 2039.742 kb on - strand, within MPMX19_01957at 2039.742 kb on - strand, within MPMX19_01957at 2039.742 kb on - strand, within MPMX19_01957at 2039.742 kb on - strand, within MPMX19_01957at 2039.742 kb on - strand, within MPMX19_01957at 2039.742 kb on - strand, within MPMX19_01957at 2039.742 kb on - strand, within MPMX19_01957at 2039.742 kb on - strand, within MPMX19_01957at 2039.742 kb on - strand, within MPMX19_01957at 2039.742 kb on - strand, within MPMX19_01957at 2039.742 kb on - strand, within MPMX19_01957at 2039.742 kb on - strand, within MPMX19_01957at 2039.742 kb on - strand, within MPMX19_01957at 2039.742 kb on - strand, within MPMX19_01957at 2039.742 kb on - strand, within MPMX19_01957at 2039.742 kb on - strand, within MPMX19_01957at 2039.742 kb on - strand, within MPMX19_01957at 2039.742 kb on - strand, within MPMX19_01957at 2039.742 kb on - strand, within MPMX19_01957

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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2,037,687 + -0.5
2,037,687 + -0.9
2,037,687 + -1.7
2,037,687 + -0.6
2,037,687 + +0.6
2,037,687 + +0.1
2,037,687 + -0.6
2,037,688 - -1.1
2,037,688 - -1.6
2,037,688 - -0.5
2,037,688 - -2.2
2,037,688 - +2.2
2,037,700 + -1.0
2,037,700 + +0.8
2,037,700 + -2.8
2,037,700 + -2.3
2,037,700 + -1.1
2,037,701 - -0.9
2,037,721 + -1.4
2,037,721 + -0.2
2,037,721 + -0.5
2,037,721 + -1.2
2,037,721 + +0.4
2,037,721 + -0.4
2,037,721 + -0.4
2,037,721 + -1.3
2,037,721 + -0.4
2,037,721 + +0.9
2,037,721 + +0.3
2,037,721 + -1.3
2,037,721 + -0.7
2,037,721 + +0.3
2,037,722 - -1.2
2,037,722 - -0.6
2,037,722 - -0.9
2,037,722 - -1.6
2,037,722 - -1.3
2,037,722 - -1.1
2,037,722 - -1.3
2,037,754 - -0.5
2,037,754 - +0.1
2,037,754 - -0.3
2,037,754 - -0.5
2,037,754 - -0.8
2,037,754 - +0.1
2,037,754 - +0.1
2,037,754 - -0.3
2,037,754 - -1.3
2,037,760 + -0.5
2,037,761 - -0.9
2,037,761 - -1.1
2,037,836 + MPMX19_01955 0.27 +0.4
2,037,836 + MPMX19_01955 0.27 -1.5
2,037,837 - MPMX19_01955 0.27 -1.7
2,037,837 - MPMX19_01955 0.27 -0.6
2,038,395 + MPMX19_01956 0.42 +0.0
2,038,395 + MPMX19_01956 0.42 +0.7
2,038,395 + MPMX19_01956 0.42 -0.5
2,038,395 + MPMX19_01956 0.42 +1.7
2,038,395 + MPMX19_01956 0.42 +0.1
2,038,395 + MPMX19_01956 0.42 -0.7
2,038,395 + MPMX19_01956 0.42 +0.7
2,038,396 - MPMX19_01956 0.42 -1.0
2,038,396 - MPMX19_01956 0.42 -1.5
2,038,396 - MPMX19_01956 0.42 -0.1
2,038,396 - MPMX19_01956 0.42 +0.1
2,038,396 - MPMX19_01956 0.42 -0.3
2,038,708 + MPMX19_01956 0.81 -1.7
2,038,709 - MPMX19_01956 0.81 -0.8
2,038,709 - MPMX19_01956 0.81 +0.1
2,038,876 + -0.6
2,038,876 + +0.6
2,038,876 + -0.0
2,038,876 + +0.4
2,038,876 + +0.1
2,038,876 + +0.5
2,038,876 + +1.1
2,038,876 + +0.3
2,038,877 - -0.4
2,038,877 - +0.7
2,038,877 - +0.7
2,038,877 - +0.2
2,038,877 - -0.2
2,038,877 - -0.1
2,038,972 + -1.7
2,038,972 + -0.0
2,038,972 + -0.1
2,038,972 + -0.1
2,038,972 + -1.3
2,038,972 + -0.2
2,038,972 + -1.7
2,038,972 + -0.6
2,038,972 + +0.3
2,038,972 + +0.0
2,038,972 + -0.7
2,038,972 + +0.7
2,038,972 + +0.9
2,038,972 + -0.7
2,038,973 - -2.4
2,038,973 - -1.0
2,038,973 - -1.3
2,038,973 - -0.4
2,038,973 - +0.1
2,038,973 - -0.6
2,038,973 - +0.5
2,038,973 - -1.9
2,039,375 + MPMX19_01957 0.41 +0.8
2,039,375 + MPMX19_01957 0.41 -0.9
2,039,376 - MPMX19_01957 0.41 +0.6
2,039,376 - MPMX19_01957 0.41 +0.4
2,039,376 - MPMX19_01957 0.41 -2.2
2,039,376 - MPMX19_01957 0.41 +0.3
2,039,567 + MPMX19_01957 0.56 -0.6
2,039,567 + MPMX19_01957 0.56 +0.8
2,039,567 + MPMX19_01957 0.56 +0.4
2,039,567 + MPMX19_01957 0.56 -0.1
2,039,567 + MPMX19_01957 0.56 -0.3
2,039,567 + MPMX19_01957 0.56 -0.6
2,039,567 + MPMX19_01957 0.56 +0.5
2,039,567 + MPMX19_01957 0.56 -0.8
2,039,567 + MPMX19_01957 0.56 -0.2
2,039,567 + MPMX19_01957 0.56 -0.0
2,039,568 - MPMX19_01957 0.56 -0.4
2,039,568 - MPMX19_01957 0.56 -0.9
2,039,568 - MPMX19_01957 0.56 -0.7
2,039,568 - MPMX19_01957 0.56 -0.0
2,039,568 - MPMX19_01957 0.56 +0.5
2,039,568 - MPMX19_01957 0.56 -1.0
2,039,568 - MPMX19_01957 0.56 +0.2
2,039,568 - MPMX19_01957 0.56 +0.4
2,039,568 - MPMX19_01957 0.56 -0.6
2,039,568 - MPMX19_01957 0.56 +1.1
2,039,741 + MPMX19_01957 0.70 +0.3
2,039,741 + MPMX19_01957 0.70 -0.6
2,039,741 + MPMX19_01957 0.70 +0.1
2,039,741 + MPMX19_01957 0.70 -0.5
2,039,741 + MPMX19_01957 0.70 +0.1
2,039,741 + MPMX19_01957 0.70 -0.3
2,039,741 + MPMX19_01957 0.70 -0.7
2,039,741 + MPMX19_01957 0.70 +0.7
2,039,741 + MPMX19_01957 0.70 -0.6
2,039,741 + MPMX19_01957 0.70 -0.0
2,039,741 + MPMX19_01957 0.70 -1.4
2,039,741 + MPMX19_01957 0.70 -0.3
2,039,741 + MPMX19_01957 0.70 +0.5
2,039,741 + MPMX19_01957 0.70 -0.2
2,039,741 + MPMX19_01957 0.70 +0.5
2,039,741 + MPMX19_01957 0.70 -0.3
2,039,741 + MPMX19_01957 0.70 +0.5
2,039,741 + MPMX19_01957 0.70 -0.7
2,039,741 + MPMX19_01957 0.70 +0.7
2,039,741 + MPMX19_01957 0.70 +0.1
2,039,741 + MPMX19_01957 0.70 -0.6
2,039,741 + MPMX19_01957 0.70 -0.8
2,039,741 + MPMX19_01957 0.70 +0.5
2,039,741 + MPMX19_01957 0.70 -1.6
2,039,741 + MPMX19_01957 0.70 -1.8
2,039,742 - MPMX19_01957 0.70 +1.7
2,039,742 - MPMX19_01957 0.70 -0.6
2,039,742 - MPMX19_01957 0.70 +1.1
2,039,742 - MPMX19_01957 0.70 +1.5
2,039,742 - MPMX19_01957 0.70 -0.4
2,039,742 - MPMX19_01957 0.70 +0.5
2,039,742 - MPMX19_01957 0.70 -0.8
2,039,742 - MPMX19_01957 0.70 -1.3
2,039,742 - MPMX19_01957 0.70 -1.0
2,039,742 - MPMX19_01957 0.70 -0.9
2,039,742 - MPMX19_01957 0.70 -0.3
2,039,742 - MPMX19_01957 0.70 -0.5
2,039,742 - MPMX19_01957 0.70 -0.6
2,039,742 - MPMX19_01957 0.70 +0.0
2,039,742 - MPMX19_01957 0.70 +0.5
2,039,742 - MPMX19_01957 0.70 -1.0
2,039,742 - MPMX19_01957 0.70 -0.7
2,039,742 - MPMX19_01957 0.70 -0.1
2,039,742 - MPMX19_01957 0.70 +1.7

Or see this region's nucleotide sequence