Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01822 and MPMX19_01823 are separated by 126 nucleotides MPMX19_01823 and MPMX19_01824 are separated by 11 nucleotides MPMX19_01824 and MPMX19_01825 are separated by 4 nucleotides
MPMX19_01822: MPMX19_01822 - 2-isopropylmalate synthase, at 1,903,811 to 1,905,508
_01822
MPMX19_01823: MPMX19_01823 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 1,905,635 to 1,906,621
_01823
MPMX19_01824: MPMX19_01824 - Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase, at 1,906,633 to 1,907,454
_01824
MPMX19_01825: MPMX19_01825 - hypothetical protein, at 1,907,459 to 1,908,592
_01825
Position (kb)
1905
1906
1907 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1904.813 kb on + strand, within MPMX19_01822 at 1904.814 kb on - strand, within MPMX19_01822 at 1904.814 kb on - strand, within MPMX19_01822 at 1904.814 kb on - strand, within MPMX19_01822 at 1904.922 kb on - strand, within MPMX19_01822 at 1904.922 kb on - strand, within MPMX19_01822 at 1904.922 kb on - strand, within MPMX19_01822 at 1904.922 kb on - strand, within MPMX19_01822 at 1904.957 kb on + strand, within MPMX19_01822 at 1904.957 kb on + strand, within MPMX19_01822 at 1904.957 kb on + strand, within MPMX19_01822 at 1904.957 kb on + strand, within MPMX19_01822 at 1904.957 kb on + strand, within MPMX19_01822 at 1904.957 kb on + strand, within MPMX19_01822 at 1904.957 kb on + strand, within MPMX19_01822 at 1904.958 kb on - strand, within MPMX19_01822 at 1904.958 kb on - strand, within MPMX19_01822 at 1904.958 kb on - strand, within MPMX19_01822 at 1904.958 kb on - strand, within MPMX19_01822 at 1904.958 kb on - strand, within MPMX19_01822 at 1905.008 kb on + strand, within MPMX19_01822 at 1905.008 kb on + strand, within MPMX19_01822 at 1905.008 kb on + strand, within MPMX19_01822 at 1905.008 kb on + strand, within MPMX19_01822 at 1905.008 kb on + strand, within MPMX19_01822 at 1905.008 kb on + strand, within MPMX19_01822 at 1905.008 kb on + strand, within MPMX19_01822 at 1905.008 kb on + strand, within MPMX19_01822 at 1905.008 kb on + strand, within MPMX19_01822 at 1905.009 kb on - strand, within MPMX19_01822 at 1905.009 kb on - strand, within MPMX19_01822 at 1905.009 kb on - strand, within MPMX19_01822 at 1905.009 kb on - strand, within MPMX19_01822 at 1905.009 kb on - strand, within MPMX19_01822 at 1905.009 kb on - strand, within MPMX19_01822 at 1905.009 kb on - strand, within MPMX19_01822 at 1905.009 kb on - strand, within MPMX19_01822 at 1905.009 kb on - strand, within MPMX19_01822 at 1905.009 kb on - strand, within MPMX19_01822 at 1905.026 kb on + strand, within MPMX19_01822 at 1905.146 kb on + strand, within MPMX19_01822 at 1905.146 kb on + strand, within MPMX19_01822 at 1905.146 kb on + strand, within MPMX19_01822 at 1905.146 kb on + strand, within MPMX19_01822 at 1905.146 kb on + strand, within MPMX19_01822 at 1905.147 kb on - strand, within MPMX19_01822 at 1905.147 kb on - strand, within MPMX19_01822 at 1905.395 kb on + strand at 1905.395 kb on + strand at 1905.395 kb on + strand at 1905.395 kb on + strand at 1905.395 kb on + strand at 1905.395 kb on + strand at 1905.396 kb on - strand at 1905.396 kb on - strand at 1905.396 kb on - strand at 1905.396 kb on - strand at 1905.396 kb on - strand at 1905.396 kb on - strand at 1905.396 kb on - strand at 1905.396 kb on - strand at 1905.396 kb on - strand at 1905.396 kb on - strand at 1905.566 kb on + strand at 1905.566 kb on + strand at 1905.566 kb on + strand at 1905.566 kb on + strand at 1905.566 kb on + strand at 1905.566 kb on + strand at 1905.566 kb on + strand at 1905.566 kb on + strand at 1905.566 kb on + strand at 1905.566 kb on + strand at 1905.566 kb on + strand at 1905.566 kb on + strand at 1905.567 kb on - strand at 1905.567 kb on - strand at 1905.567 kb on - strand at 1905.567 kb on - strand at 1905.567 kb on - strand at 1905.567 kb on - strand at 1905.567 kb on - strand at 1905.567 kb on - strand at 1905.567 kb on - strand at 1905.593 kb on + strand at 1905.593 kb on + strand at 1905.593 kb on + strand at 1905.593 kb on + strand at 1905.593 kb on + strand at 1905.593 kb on + strand at 1905.593 kb on + strand at 1905.593 kb on + strand at 1905.593 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.595 kb on + strand at 1905.596 kb on - strand at 1905.613 kb on + strand at 1905.613 kb on + strand at 1905.613 kb on + strand at 1905.634 kb on + strand at 1905.634 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 1,904,813 + MPMX19_01822 0.59 -1.3 1,904,814 - MPMX19_01822 0.59 -1.8 1,904,814 - MPMX19_01822 0.59 -1.1 1,904,814 - MPMX19_01822 0.59 -1.1 1,904,922 - MPMX19_01822 0.65 +0.7 1,904,922 - MPMX19_01822 0.65 -0.5 1,904,922 - MPMX19_01822 0.65 +0.7 1,904,922 - MPMX19_01822 0.65 -1.5 1,904,957 + MPMX19_01822 0.67 -0.6 1,904,957 + MPMX19_01822 0.67 -1.1 1,904,957 + MPMX19_01822 0.67 -1.6 1,904,957 + MPMX19_01822 0.67 +1.7 1,904,957 + MPMX19_01822 0.67 -0.6 1,904,957 + MPMX19_01822 0.67 -0.6 1,904,957 + MPMX19_01822 0.67 +1.7 1,904,958 - MPMX19_01822 0.68 -0.3 1,904,958 - MPMX19_01822 0.68 +0.8 1,904,958 - MPMX19_01822 0.68 -1.1 1,904,958 - MPMX19_01822 0.68 +2.7 1,904,958 - MPMX19_01822 0.68 -1.1 1,905,008 + MPMX19_01822 0.70 +0.5 1,905,008 + MPMX19_01822 0.70 +1.7 1,905,008 + MPMX19_01822 0.70 -1.6 1,905,008 + MPMX19_01822 0.70 -0.3 1,905,008 + MPMX19_01822 0.70 -0.9 1,905,008 + MPMX19_01822 0.70 +0.4 1,905,008 + MPMX19_01822 0.70 -0.9 1,905,008 + MPMX19_01822 0.70 +0.7 1,905,008 + MPMX19_01822 0.70 -0.7 1,905,009 - MPMX19_01822 0.71 +2.3 1,905,009 - MPMX19_01822 0.71 +0.4 1,905,009 - MPMX19_01822 0.71 +0.1 1,905,009 - MPMX19_01822 0.71 -1.3 1,905,009 - MPMX19_01822 0.71 +0.7 1,905,009 - MPMX19_01822 0.71 -1.3 1,905,009 - MPMX19_01822 0.71 +1.0 1,905,009 - MPMX19_01822 0.71 -2.1 1,905,009 - MPMX19_01822 0.71 -1.9 1,905,009 - MPMX19_01822 0.71 -0.3 1,905,026 + MPMX19_01822 0.72 +0.7 1,905,146 + MPMX19_01822 0.79 -0.3 1,905,146 + MPMX19_01822 0.79 -0.6 1,905,146 + MPMX19_01822 0.79 -0.6 1,905,146 + MPMX19_01822 0.79 -1.5 1,905,146 + MPMX19_01822 0.79 -0.2 1,905,147 - MPMX19_01822 0.79 +0.1 1,905,147 - MPMX19_01822 0.79 -0.3 1,905,395 + +0.9 1,905,395 + +0.1 1,905,395 + +0.1 1,905,395 + +0.1 1,905,395 + -0.3 1,905,395 + -0.1 1,905,396 - -0.5 1,905,396 - -0.4 1,905,396 - +1.3 1,905,396 - -0.6 1,905,396 - +0.3 1,905,396 - -0.8 1,905,396 - -0.9 1,905,396 - +0.5 1,905,396 - +0.4 1,905,396 - -0.6 1,905,566 + +1.4 1,905,566 + -0.5 1,905,566 + -0.6 1,905,566 + -0.6 1,905,566 + -1.4 1,905,566 + -1.1 1,905,566 + -0.0 1,905,566 + -0.1 1,905,566 + -2.5 1,905,566 + -0.6 1,905,566 + -0.0 1,905,566 + +0.4 1,905,567 - +0.9 1,905,567 - -2.4 1,905,567 - +0.4 1,905,567 - +0.1 1,905,567 - +0.1 1,905,567 - +0.5 1,905,567 - +0.5 1,905,567 - -0.6 1,905,567 - +0.1 1,905,593 + +0.1 1,905,593 + -0.5 1,905,593 + +0.1 1,905,593 + -0.1 1,905,593 + -1.0 1,905,593 + -1.2 1,905,593 + -0.1 1,905,593 + -0.8 1,905,593 + -0.4 1,905,595 + -3.4 1,905,595 + +0.3 1,905,595 + -0.6 1,905,595 + +0.3 1,905,595 + -0.6 1,905,595 + -1.1 1,905,595 + -1.9 1,905,595 + +0.7 1,905,595 + -1.3 1,905,595 + -0.2 1,905,595 + +0.7 1,905,595 + -1.6 1,905,595 + +0.4 1,905,595 + -0.8 1,905,595 + +0.5 1,905,595 + -0.6 1,905,595 + -3.3 1,905,595 + -0.3 1,905,595 + -1.9 1,905,595 + -0.6 1,905,595 + -0.2 1,905,596 - -0.4 1,905,613 + +0.6 1,905,613 + -0.3 1,905,613 + +0.1 1,905,634 + -1.8 1,905,634 + -0.8
Or see this region's nucleotide sequence