Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01796

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01794 and MPMX19_01795 are separated by 132 nucleotidesMPMX19_01795 and MPMX19_01796 are separated by 31 nucleotidesMPMX19_01796 and MPMX19_01797 are separated by 63 nucleotides MPMX19_01794: MPMX19_01794 - Putative cysteine protease YraA, at 1,879,711 to 1,880,283 _01794 MPMX19_01795: MPMX19_01795 - hypothetical protein, at 1,880,416 to 1,880,772 _01795 MPMX19_01796: MPMX19_01796 - hypothetical protein, at 1,880,804 to 1,881,274 _01796 MPMX19_01797: MPMX19_01797 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,881,338 to 1,882,630 _01797 Position (kb) 1880 1881 1882Strain fitness (log2 ratio) -2 -1 0 1at 1880.066 kb on + strand, within MPMX19_01794at 1880.066 kb on + strand, within MPMX19_01794at 1880.066 kb on + strand, within MPMX19_01794at 1880.067 kb on - strand, within MPMX19_01794at 1880.067 kb on - strand, within MPMX19_01794at 1880.067 kb on - strand, within MPMX19_01794at 1880.067 kb on - strand, within MPMX19_01794at 1880.067 kb on - strand, within MPMX19_01794at 1880.067 kb on - strand, within MPMX19_01794at 1880.067 kb on - strand, within MPMX19_01794at 1880.067 kb on - strand, within MPMX19_01794at 1880.067 kb on - strand, within MPMX19_01794at 1880.067 kb on - strand, within MPMX19_01794at 1880.327 kb on + strandat 1880.328 kb on - strandat 1880.328 kb on - strandat 1880.328 kb on - strandat 1880.382 kb on + strandat 1880.383 kb on - strandat 1880.383 kb on - strandat 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.750 kb on - strandat 1881.054 kb on + strand, within MPMX19_01796at 1881.055 kb on - strand, within MPMX19_01796at 1881.055 kb on - strand, within MPMX19_01796at 1881.339 kb on + strandat 1881.339 kb on + strandat 1881.339 kb on + strandat 1881.340 kb on - strandat 1881.340 kb on - strandat 1881.340 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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1,880,066 + MPMX19_01794 0.62 -0.5
1,880,066 + MPMX19_01794 0.62 +1.1
1,880,066 + MPMX19_01794 0.62 -0.1
1,880,067 - MPMX19_01794 0.62 +0.7
1,880,067 - MPMX19_01794 0.62 +0.5
1,880,067 - MPMX19_01794 0.62 -1.1
1,880,067 - MPMX19_01794 0.62 +1.1
1,880,067 - MPMX19_01794 0.62 +0.1
1,880,067 - MPMX19_01794 0.62 -0.3
1,880,067 - MPMX19_01794 0.62 -1.8
1,880,067 - MPMX19_01794 0.62 -1.4
1,880,067 - MPMX19_01794 0.62 -1.1
1,880,067 - MPMX19_01794 0.62 -0.6
1,880,327 + -0.6
1,880,328 - +0.4
1,880,328 - -0.5
1,880,328 - -0.1
1,880,382 + -0.8
1,880,383 - -0.2
1,880,383 - +0.1
1,880,707 + MPMX19_01795 0.82 +0.9
1,880,707 + MPMX19_01795 0.82 +1.0
1,880,707 + MPMX19_01795 0.82 -0.8
1,880,707 + MPMX19_01795 0.82 -0.9
1,880,707 + MPMX19_01795 0.82 +0.4
1,880,707 + MPMX19_01795 0.82 +0.6
1,880,707 + MPMX19_01795 0.82 -1.4
1,880,707 + MPMX19_01795 0.82 +0.2
1,880,707 + MPMX19_01795 0.82 -0.5
1,880,707 + MPMX19_01795 0.82 -0.5
1,880,707 + MPMX19_01795 0.82 -0.9
1,880,707 + MPMX19_01795 0.82 -0.8
1,880,707 + MPMX19_01795 0.82 -1.0
1,880,707 + MPMX19_01795 0.82 +0.3
1,880,708 - MPMX19_01795 0.82 +0.3
1,880,708 - MPMX19_01795 0.82 -0.7
1,880,708 - MPMX19_01795 0.82 -0.9
1,880,708 - MPMX19_01795 0.82 +0.7
1,880,708 - MPMX19_01795 0.82 -0.9
1,880,708 - MPMX19_01795 0.82 -0.7
1,880,708 - MPMX19_01795 0.82 -1.8
1,880,708 - MPMX19_01795 0.82 +1.2
1,880,708 - MPMX19_01795 0.82 -0.1
1,880,708 - MPMX19_01795 0.82 -0.8
1,880,750 - -0.9
1,881,054 + MPMX19_01796 0.53 -1.6
1,881,055 - MPMX19_01796 0.53 -0.3
1,881,055 - MPMX19_01796 0.53 -1.5
1,881,339 + -2.0
1,881,339 + -0.7
1,881,339 + -0.2
1,881,340 - +0.5
1,881,340 - +0.1
1,881,340 - +0.4

Or see this region's nucleotide sequence