Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01600

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_01599 and MPMX19_01600 are separated by 47 nucleotidesMPMX19_01600 and MPMX19_01601 are separated by 31 nucleotides MPMX19_01599: MPMX19_01599 - GDP-mannose pyrophosphatase NudK, at 1,675,937 to 1,676,551 _01599 MPMX19_01600: MPMX19_01600 - hypothetical protein, at 1,676,599 to 1,677,492 _01600 MPMX19_01601: MPMX19_01601 - DNA repair protein RecN, at 1,677,524 to 1,679,200 _01601 Position (kb) 1676 1677 1678Strain fitness (log2 ratio) -2 -1 0 1 2at 1675.632 kb on + strandat 1675.633 kb on - strandat 1675.633 kb on - strandat 1675.633 kb on - strandat 1675.672 kb on - strandat 1675.684 kb on + strandat 1675.684 kb on + strandat 1675.684 kb on + strandat 1675.684 kb on + strandat 1675.684 kb on + strandat 1675.684 kb on + strandat 1675.684 kb on + strandat 1675.684 kb on + strandat 1675.684 kb on + strandat 1675.685 kb on - strandat 1675.685 kb on - strandat 1675.685 kb on - strandat 1675.685 kb on - strandat 1675.685 kb on - strandat 1675.685 kb on - strandat 1675.685 kb on - strandat 1675.685 kb on - strandat 1675.698 kb on + strandat 1675.703 kb on + strandat 1675.704 kb on - strandat 1675.708 kb on + strandat 1675.708 kb on + strandat 1675.708 kb on + strandat 1675.708 kb on + strandat 1675.708 kb on + strandat 1675.708 kb on + strandat 1675.708 kb on + strandat 1675.708 kb on + strandat 1675.708 kb on + strandat 1675.709 kb on - strandat 1675.709 kb on - strandat 1675.709 kb on - strandat 1675.709 kb on - strandat 1675.709 kb on - strandat 1675.714 kb on - strandat 1675.740 kb on + strandat 1675.740 kb on + strandat 1675.740 kb on + strandat 1675.740 kb on + strandat 1675.740 kb on + strandat 1675.741 kb on - strandat 1675.741 kb on - strandat 1675.741 kb on - strandat 1675.741 kb on - strandat 1675.809 kb on + strandat 1675.810 kb on - strandat 1675.810 kb on - strandat 1676.024 kb on + strand, within MPMX19_01599at 1676.024 kb on + strand, within MPMX19_01599at 1676.024 kb on + strand, within MPMX19_01599at 1676.024 kb on + strand, within MPMX19_01599at 1676.024 kb on + strand, within MPMX19_01599at 1676.024 kb on + strand, within MPMX19_01599at 1676.024 kb on + strand, within MPMX19_01599at 1676.024 kb on + strand, within MPMX19_01599at 1676.024 kb on + strand, within MPMX19_01599at 1676.024 kb on + strand, within MPMX19_01599at 1676.024 kb on + strand, within MPMX19_01599at 1676.025 kb on - strand, within MPMX19_01599at 1676.025 kb on - strand, within MPMX19_01599at 1676.025 kb on - strand, within MPMX19_01599at 1676.025 kb on - strand, within MPMX19_01599at 1676.025 kb on - strand, within MPMX19_01599at 1676.025 kb on - strand, within MPMX19_01599at 1676.082 kb on + strand, within MPMX19_01599at 1676.082 kb on + strand, within MPMX19_01599at 1676.083 kb on - strand, within MPMX19_01599at 1676.083 kb on - strand, within MPMX19_01599at 1676.096 kb on + strand, within MPMX19_01599at 1676.096 kb on + strand, within MPMX19_01599at 1676.096 kb on + strand, within MPMX19_01599at 1676.096 kb on + strand, within MPMX19_01599at 1676.096 kb on + strand, within MPMX19_01599at 1676.096 kb on + strand, within MPMX19_01599at 1676.096 kb on + strand, within MPMX19_01599at 1676.096 kb on + strand, within MPMX19_01599at 1676.096 kb on + strand, within MPMX19_01599at 1676.096 kb on + strand, within MPMX19_01599at 1676.096 kb on + strand, within MPMX19_01599at 1676.096 kb on + strand, within MPMX19_01599at 1676.096 kb on + strand, within MPMX19_01599at 1676.096 kb on + strand, within MPMX19_01599at 1676.096 kb on + strand, within MPMX19_01599at 1676.097 kb on - strand, within MPMX19_01599at 1676.097 kb on - strand, within MPMX19_01599at 1676.097 kb on - strand, within MPMX19_01599at 1676.097 kb on - strand, within MPMX19_01599at 1676.097 kb on - strand, within MPMX19_01599at 1676.097 kb on - strand, within MPMX19_01599at 1676.097 kb on - strand, within MPMX19_01599at 1676.097 kb on - strand, within MPMX19_01599at 1676.097 kb on - strand, within MPMX19_01599at 1676.097 kb on - strand, within MPMX19_01599at 1676.129 kb on + strand, within MPMX19_01599at 1676.129 kb on + strand, within MPMX19_01599at 1676.129 kb on + strand, within MPMX19_01599at 1676.130 kb on - strand, within MPMX19_01599at 1676.130 kb on - strand, within MPMX19_01599at 1676.130 kb on - strand, within MPMX19_01599at 1676.130 kb on - strand, within MPMX19_01599at 1676.130 kb on - strand, within MPMX19_01599at 1676.183 kb on + strand, within MPMX19_01599at 1676.183 kb on + strand, within MPMX19_01599at 1676.183 kb on + strand, within MPMX19_01599at 1676.183 kb on + strand, within MPMX19_01599at 1676.183 kb on + strand, within MPMX19_01599at 1676.184 kb on - strand, within MPMX19_01599at 1676.184 kb on - strand, within MPMX19_01599at 1676.184 kb on - strand, within MPMX19_01599at 1676.184 kb on - strand, within MPMX19_01599at 1676.184 kb on - strand, within MPMX19_01599at 1676.184 kb on - strand, within MPMX19_01599at 1676.519 kb on + strandat 1676.519 kb on + strandat 1676.519 kb on + strandat 1676.519 kb on + strandat 1676.519 kb on + strandat 1676.519 kb on + strandat 1676.519 kb on + strandat 1676.519 kb on + strandat 1676.519 kb on + strandat 1676.519 kb on + strandat 1676.520 kb on - strandat 1676.520 kb on - strandat 1676.520 kb on - strandat 1676.520 kb on - strandat 1676.520 kb on - strandat 1676.520 kb on - strandat 1676.520 kb on - strandat 1676.520 kb on - strandat 1676.520 kb on - strandat 1676.520 kb on - strandat 1676.520 kb on - strandat 1676.632 kb on - strandat 1677.103 kb on + strand, within MPMX19_01600at 1677.103 kb on + strand, within MPMX19_01600at 1677.103 kb on + strand, within MPMX19_01600at 1677.104 kb on - strand, within MPMX19_01600at 1677.104 kb on - strand, within MPMX19_01600at 1677.104 kb on - strand, within MPMX19_01600at 1677.104 kb on - strand, within MPMX19_01600at 1677.104 kb on - strand, within MPMX19_01600at 1677.104 kb on - strand, within MPMX19_01600at 1677.104 kb on - strand, within MPMX19_01600at 1677.320 kb on + strand, within MPMX19_01600at 1677.320 kb on + strand, within MPMX19_01600at 1677.320 kb on + strand, within MPMX19_01600at 1677.320 kb on + strand, within MPMX19_01600at 1677.321 kb on - strand, within MPMX19_01600at 1677.321 kb on - strand, within MPMX19_01600at 1677.321 kb on - strand, within MPMX19_01600at 1677.321 kb on - strand, within MPMX19_01600at 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.490 kb on + strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.491 kb on - strandat 1677.510 kb on + strandat 1677.510 kb on + strandat 1677.510 kb on + strandat 1677.510 kb on + strandat 1677.510 kb on + strandat 1677.510 kb on + strandat 1677.510 kb on + strandat 1677.510 kb on + strandat 1677.510 kb on + strandat 1677.510 kb on + strandat 1677.510 kb on + strandat 1677.510 kb on + strandat 1677.510 kb on + strandat 1677.510 kb on + strandat 1677.510 kb on + strandat 1677.510 kb on + strandat 1677.510 kb on + strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1677.511 kb on - strandat 1678.012 kb on + strand, within MPMX19_01601at 1678.012 kb on + strand, within MPMX19_01601at 1678.012 kb on + strand, within MPMX19_01601at 1678.013 kb on - strand, within MPMX19_01601at 1678.013 kb on - strand, within MPMX19_01601at 1678.013 kb on - strand, within MPMX19_01601at 1678.120 kb on + strand, within MPMX19_01601

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
1,675,632 + -0.9
1,675,633 - -1.4
1,675,633 - +0.1
1,675,633 - +0.3
1,675,672 - -0.9
1,675,684 + +0.5
1,675,684 + -1.5
1,675,684 + -0.5
1,675,684 + +0.2
1,675,684 + +0.7
1,675,684 + +0.7
1,675,684 + -1.7
1,675,684 + -0.9
1,675,684 + -1.6
1,675,685 - +0.2
1,675,685 - -0.3
1,675,685 - -1.0
1,675,685 - -0.2
1,675,685 - +0.4
1,675,685 - +0.1
1,675,685 - -0.4
1,675,685 - -0.7
1,675,698 + -0.9
1,675,703 + +0.1
1,675,704 - -0.9
1,675,708 + -0.8
1,675,708 + -1.6
1,675,708 + -0.7
1,675,708 + -2.5
1,675,708 + -1.6
1,675,708 + -0.7
1,675,708 + +0.1
1,675,708 + -1.0
1,675,708 + -1.4
1,675,709 - -1.3
1,675,709 - -0.1
1,675,709 - +0.9
1,675,709 - -1.7
1,675,709 - +0.3
1,675,714 - -0.3
1,675,740 + -0.9
1,675,740 + -0.0
1,675,740 + -0.3
1,675,740 + -0.3
1,675,740 + -1.0
1,675,741 - +0.2
1,675,741 - -0.6
1,675,741 - -0.7
1,675,741 - +0.3
1,675,809 + +0.5
1,675,810 - +1.4
1,675,810 - +0.5
1,676,024 + MPMX19_01599 0.14 -1.0
1,676,024 + MPMX19_01599 0.14 -0.5
1,676,024 + MPMX19_01599 0.14 +0.9
1,676,024 + MPMX19_01599 0.14 +0.6
1,676,024 + MPMX19_01599 0.14 -0.8
1,676,024 + MPMX19_01599 0.14 +0.7
1,676,024 + MPMX19_01599 0.14 +0.4
1,676,024 + MPMX19_01599 0.14 -1.5
1,676,024 + MPMX19_01599 0.14 +0.9
1,676,024 + MPMX19_01599 0.14 +0.0
1,676,024 + MPMX19_01599 0.14 -0.1
1,676,025 - MPMX19_01599 0.14 -0.5
1,676,025 - MPMX19_01599 0.14 -0.2
1,676,025 - MPMX19_01599 0.14 -2.2
1,676,025 - MPMX19_01599 0.14 +0.5
1,676,025 - MPMX19_01599 0.14 -1.8
1,676,025 - MPMX19_01599 0.14 -2.1
1,676,082 + MPMX19_01599 0.24 -0.6
1,676,082 + MPMX19_01599 0.24 -0.9
1,676,083 - MPMX19_01599 0.24 -1.1
1,676,083 - MPMX19_01599 0.24 +1.1
1,676,096 + MPMX19_01599 0.26 -0.1
1,676,096 + MPMX19_01599 0.26 -0.8
1,676,096 + MPMX19_01599 0.26 -1.7
1,676,096 + MPMX19_01599 0.26 -0.3
1,676,096 + MPMX19_01599 0.26 +0.1
1,676,096 + MPMX19_01599 0.26 -0.7
1,676,096 + MPMX19_01599 0.26 -0.1
1,676,096 + MPMX19_01599 0.26 +1.8
1,676,096 + MPMX19_01599 0.26 +0.4
1,676,096 + MPMX19_01599 0.26 +0.4
1,676,096 + MPMX19_01599 0.26 +0.2
1,676,096 + MPMX19_01599 0.26 -2.3
1,676,096 + MPMX19_01599 0.26 +0.1
1,676,096 + MPMX19_01599 0.26 -1.3
1,676,096 + MPMX19_01599 0.26 -0.4
1,676,097 - MPMX19_01599 0.26 -0.1
1,676,097 - MPMX19_01599 0.26 -1.3
1,676,097 - MPMX19_01599 0.26 -0.9
1,676,097 - MPMX19_01599 0.26 -1.7
1,676,097 - MPMX19_01599 0.26 -1.5
1,676,097 - MPMX19_01599 0.26 -0.3
1,676,097 - MPMX19_01599 0.26 -0.4
1,676,097 - MPMX19_01599 0.26 -0.7
1,676,097 - MPMX19_01599 0.26 -0.1
1,676,097 - MPMX19_01599 0.26 -1.1
1,676,129 + MPMX19_01599 0.31 -0.6
1,676,129 + MPMX19_01599 0.31 +0.1
1,676,129 + MPMX19_01599 0.31 +0.9
1,676,130 - MPMX19_01599 0.31 -0.3
1,676,130 - MPMX19_01599 0.31 +0.3
1,676,130 - MPMX19_01599 0.31 +1.1
1,676,130 - MPMX19_01599 0.31 -0.3
1,676,130 - MPMX19_01599 0.31 +0.1
1,676,183 + MPMX19_01599 0.40 +0.2
1,676,183 + MPMX19_01599 0.40 -1.0
1,676,183 + MPMX19_01599 0.40 -0.9
1,676,183 + MPMX19_01599 0.40 -1.7
1,676,183 + MPMX19_01599 0.40 -1.7
1,676,184 - MPMX19_01599 0.40 +0.2
1,676,184 - MPMX19_01599 0.40 -1.2
1,676,184 - MPMX19_01599 0.40 +0.1
1,676,184 - MPMX19_01599 0.40 -0.7
1,676,184 - MPMX19_01599 0.40 -0.7
1,676,184 - MPMX19_01599 0.40 -0.9
1,676,519 + +0.2
1,676,519 + -0.3
1,676,519 + -0.5
1,676,519 + +0.1
1,676,519 + -0.1
1,676,519 + -0.7
1,676,519 + +0.3
1,676,519 + -2.7
1,676,519 + +0.4
1,676,519 + +0.1
1,676,520 - +0.2
1,676,520 - +0.5
1,676,520 - -0.2
1,676,520 - +0.1
1,676,520 - -0.1
1,676,520 - -1.7
1,676,520 - -0.9
1,676,520 - -0.1
1,676,520 - +0.1
1,676,520 - -1.2
1,676,520 - -0.7
1,676,632 - -1.9
1,677,103 + MPMX19_01600 0.56 +0.4
1,677,103 + MPMX19_01600 0.56 +0.7
1,677,103 + MPMX19_01600 0.56 -0.9
1,677,104 - MPMX19_01600 0.56 -1.1
1,677,104 - MPMX19_01600 0.56 -0.3
1,677,104 - MPMX19_01600 0.56 +0.1
1,677,104 - MPMX19_01600 0.56 -0.9
1,677,104 - MPMX19_01600 0.56 +0.1
1,677,104 - MPMX19_01600 0.56 +0.5
1,677,104 - MPMX19_01600 0.56 -1.3
1,677,320 + MPMX19_01600 0.81 +0.4
1,677,320 + MPMX19_01600 0.81 +0.4
1,677,320 + MPMX19_01600 0.81 +0.1
1,677,320 + MPMX19_01600 0.81 -1.1
1,677,321 - MPMX19_01600 0.81 -0.2
1,677,321 - MPMX19_01600 0.81 -0.1
1,677,321 - MPMX19_01600 0.81 -1.3
1,677,321 - MPMX19_01600 0.81 +0.7
1,677,490 + -0.4
1,677,490 + +1.7
1,677,490 + -1.1
1,677,490 + -0.9
1,677,490 + -1.5
1,677,490 + +0.6
1,677,490 + +0.4
1,677,490 + -1.0
1,677,490 + -0.4
1,677,490 + -0.2
1,677,490 + +0.7
1,677,490 + -0.5
1,677,490 + -0.7
1,677,490 + -1.5
1,677,490 + +0.1
1,677,490 + +0.4
1,677,490 + +0.4
1,677,490 + -1.9
1,677,490 + -0.1
1,677,490 + -0.3
1,677,490 + -0.4
1,677,490 + -0.9
1,677,490 + -0.2
1,677,490 + +0.7
1,677,490 + -0.6
1,677,491 - -0.6
1,677,491 - -1.4
1,677,491 - +1.2
1,677,491 - -1.1
1,677,491 - -1.7
1,677,491 - -1.1
1,677,491 - -0.2
1,677,491 - -1.9
1,677,491 - -0.8
1,677,491 - +0.2
1,677,491 - +0.2
1,677,491 - -0.8
1,677,491 - +1.1
1,677,491 - +0.1
1,677,491 - -1.0
1,677,491 - -0.7
1,677,491 - +0.7
1,677,491 - +0.9
1,677,491 - -0.8
1,677,491 - -0.2
1,677,491 - +0.8
1,677,491 - -0.4
1,677,491 - -1.1
1,677,491 - -0.6
1,677,510 + -0.2
1,677,510 + -1.7
1,677,510 + +0.5
1,677,510 + -1.3
1,677,510 + +0.3
1,677,510 + +0.4
1,677,510 + +0.3
1,677,510 + +0.1
1,677,510 + +0.3
1,677,510 + -1.0
1,677,510 + -0.8
1,677,510 + +0.9
1,677,510 + -0.3
1,677,510 + -0.3
1,677,510 + +0.1
1,677,510 + -0.3
1,677,510 + +0.3
1,677,511 - -0.0
1,677,511 - -0.8
1,677,511 - -0.9
1,677,511 - +0.0
1,677,511 - -0.8
1,677,511 - +0.3
1,677,511 - -1.1
1,677,511 - -0.2
1,677,511 - -0.1
1,677,511 - -0.8
1,677,511 - -1.9
1,677,511 - +0.2
1,677,511 - -0.7
1,677,511 - -1.5
1,677,511 - -0.2
1,677,511 - -1.4
1,677,511 - -0.9
1,677,511 - -0.3
1,677,511 - -1.5
1,677,511 - +0.7
1,677,511 - -0.9
1,677,511 - -0.4
1,677,511 - -0.8
1,677,511 - -0.5
1,678,012 + MPMX19_01601 0.29 -0.5
1,678,012 + MPMX19_01601 0.29 +0.1
1,678,012 + MPMX19_01601 0.29 -0.9
1,678,013 - MPMX19_01601 0.29 -2.0
1,678,013 - MPMX19_01601 0.29 +1.1
1,678,013 - MPMX19_01601 0.29 -1.4
1,678,120 + MPMX19_01601 0.36 -1.5

Or see this region's nucleotide sequence