Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01534

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01533 and MPMX19_01534 are separated by 135 nucleotidesMPMX19_01534 and MPMX19_01535 are separated by 15 nucleotidesMPMX19_01535 and MPMX19_01536 are separated by 283 nucleotides MPMX19_01533: MPMX19_01533 - DNA-directed RNA polymerase subunit alpha, at 1,604,827 to 1,605,843 _01533 MPMX19_01534: MPMX19_01534 - 30S ribosomal protein S11, at 1,605,979 to 1,606,377 _01534 MPMX19_01535: MPMX19_01535 - 30S ribosomal protein S13, at 1,606,393 to 1,606,761 _01535 MPMX19_01536: MPMX19_01536 - hypothetical protein, at 1,607,045 to 1,607,602 _01536 Position (kb) 1605 1606 1607Strain fitness (log2 ratio) -2 -1 0 1 2at 1606.783 kb on - strandat 1606.811 kb on - strandat 1606.811 kb on - strandat 1606.811 kb on - strandat 1607.175 kb on + strand, within MPMX19_01536at 1607.175 kb on + strand, within MPMX19_01536at 1607.175 kb on + strand, within MPMX19_01536at 1607.175 kb on + strand, within MPMX19_01536at 1607.175 kb on + strand, within MPMX19_01536at 1607.175 kb on + strand, within MPMX19_01536at 1607.175 kb on + strand, within MPMX19_01536at 1607.175 kb on + strand, within MPMX19_01536at 1607.175 kb on + strand, within MPMX19_01536at 1607.176 kb on - strand, within MPMX19_01536at 1607.176 kb on - strand, within MPMX19_01536at 1607.176 kb on - strand, within MPMX19_01536at 1607.176 kb on - strand, within MPMX19_01536at 1607.176 kb on - strand, within MPMX19_01536at 1607.176 kb on - strand, within MPMX19_01536at 1607.176 kb on - strand, within MPMX19_01536at 1607.176 kb on - strand, within MPMX19_01536at 1607.176 kb on - strand, within MPMX19_01536at 1607.274 kb on + strand, within MPMX19_01536at 1607.274 kb on + strand, within MPMX19_01536at 1607.274 kb on + strand, within MPMX19_01536at 1607.274 kb on + strand, within MPMX19_01536at 1607.274 kb on + strand, within MPMX19_01536at 1607.274 kb on + strand, within MPMX19_01536at 1607.274 kb on + strand, within MPMX19_01536at 1607.274 kb on + strand, within MPMX19_01536at 1607.274 kb on + strand, within MPMX19_01536at 1607.274 kb on + strand, within MPMX19_01536at 1607.274 kb on + strand, within MPMX19_01536at 1607.274 kb on + strand, within MPMX19_01536at 1607.274 kb on + strand, within MPMX19_01536at 1607.274 kb on + strand, within MPMX19_01536at 1607.274 kb on + strand, within MPMX19_01536at 1607.274 kb on + strand, within MPMX19_01536at 1607.274 kb on + strand, within MPMX19_01536at 1607.274 kb on + strand, within MPMX19_01536at 1607.275 kb on - strand, within MPMX19_01536at 1607.275 kb on - strand, within MPMX19_01536at 1607.275 kb on - strand, within MPMX19_01536at 1607.275 kb on - strand, within MPMX19_01536at 1607.275 kb on - strand, within MPMX19_01536at 1607.275 kb on - strand, within MPMX19_01536at 1607.275 kb on - strand, within MPMX19_01536at 1607.275 kb on - strand, within MPMX19_01536at 1607.275 kb on - strand, within MPMX19_01536at 1607.275 kb on - strand, within MPMX19_01536at 1607.275 kb on - strand, within MPMX19_01536at 1607.275 kb on - strand, within MPMX19_01536at 1607.275 kb on - strand, within MPMX19_01536at 1607.275 kb on - strand, within MPMX19_01536at 1607.275 kb on - strand, within MPMX19_01536at 1607.275 kb on - strand, within MPMX19_01536at 1607.275 kb on - strand, within MPMX19_01536at 1607.310 kb on + strand, within MPMX19_01536at 1607.310 kb on + strand, within MPMX19_01536at 1607.311 kb on - strand, within MPMX19_01536at 1607.361 kb on + strand, within MPMX19_01536at 1607.361 kb on + strand, within MPMX19_01536

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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1,606,783 - +2.0
1,606,811 - +0.5
1,606,811 - +0.9
1,606,811 - -1.9
1,607,175 + MPMX19_01536 0.23 -1.1
1,607,175 + MPMX19_01536 0.23 -1.3
1,607,175 + MPMX19_01536 0.23 -0.9
1,607,175 + MPMX19_01536 0.23 +0.4
1,607,175 + MPMX19_01536 0.23 -1.5
1,607,175 + MPMX19_01536 0.23 +1.9
1,607,175 + MPMX19_01536 0.23 -1.7
1,607,175 + MPMX19_01536 0.23 -1.8
1,607,175 + MPMX19_01536 0.23 +1.7
1,607,176 - MPMX19_01536 0.23 -1.3
1,607,176 - MPMX19_01536 0.23 +1.0
1,607,176 - MPMX19_01536 0.23 -0.2
1,607,176 - MPMX19_01536 0.23 -1.9
1,607,176 - MPMX19_01536 0.23 -1.1
1,607,176 - MPMX19_01536 0.23 -0.9
1,607,176 - MPMX19_01536 0.23 -2.0
1,607,176 - MPMX19_01536 0.23 -0.4
1,607,176 - MPMX19_01536 0.23 -0.4
1,607,274 + MPMX19_01536 0.41 +1.3
1,607,274 + MPMX19_01536 0.41 -2.2
1,607,274 + MPMX19_01536 0.41 -0.3
1,607,274 + MPMX19_01536 0.41 -1.9
1,607,274 + MPMX19_01536 0.41 -0.3
1,607,274 + MPMX19_01536 0.41 -0.8
1,607,274 + MPMX19_01536 0.41 -0.3
1,607,274 + MPMX19_01536 0.41 -0.1
1,607,274 + MPMX19_01536 0.41 +0.5
1,607,274 + MPMX19_01536 0.41 +0.0
1,607,274 + MPMX19_01536 0.41 -0.3
1,607,274 + MPMX19_01536 0.41 +0.9
1,607,274 + MPMX19_01536 0.41 +1.7
1,607,274 + MPMX19_01536 0.41 -1.3
1,607,274 + MPMX19_01536 0.41 -1.7
1,607,274 + MPMX19_01536 0.41 -0.8
1,607,274 + MPMX19_01536 0.41 +0.1
1,607,274 + MPMX19_01536 0.41 -1.2
1,607,275 - MPMX19_01536 0.41 -1.7
1,607,275 - MPMX19_01536 0.41 -0.9
1,607,275 - MPMX19_01536 0.41 -0.3
1,607,275 - MPMX19_01536 0.41 -1.0
1,607,275 - MPMX19_01536 0.41 -0.1
1,607,275 - MPMX19_01536 0.41 +1.1
1,607,275 - MPMX19_01536 0.41 +0.3
1,607,275 - MPMX19_01536 0.41 -0.9
1,607,275 - MPMX19_01536 0.41 -1.0
1,607,275 - MPMX19_01536 0.41 +0.3
1,607,275 - MPMX19_01536 0.41 +0.9
1,607,275 - MPMX19_01536 0.41 -1.2
1,607,275 - MPMX19_01536 0.41 -0.1
1,607,275 - MPMX19_01536 0.41 -0.7
1,607,275 - MPMX19_01536 0.41 -0.3
1,607,275 - MPMX19_01536 0.41 -0.2
1,607,275 - MPMX19_01536 0.41 -0.5
1,607,310 + MPMX19_01536 0.47 -1.5
1,607,310 + MPMX19_01536 0.47 -1.8
1,607,311 - MPMX19_01536 0.48 -0.1
1,607,361 + MPMX19_01536 0.57 -0.4
1,607,361 + MPMX19_01536 0.57 -2.0

Or see this region's nucleotide sequence