Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01507 and MPMX19_01508 are separated by 384 nucleotides MPMX19_01508 and MPMX19_01509 are separated by 46 nucleotides
MPMX19_01507: MPMX19_01507 - hypothetical protein, at 1,577,040 to 1,578,518
_01507
MPMX19_01508: MPMX19_01508 - hypothetical protein, at 1,578,903 to 1,580,039
_01508
MPMX19_01509: MPMX19_01509 - DNA topoisomerase 1, at 1,580,086 to 1,582,890
_01509
Position (kb)
1578
1579
1580
1581 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1577.944 kb on + strand, within MPMX19_01507 at 1577.945 kb on - strand, within MPMX19_01507 at 1577.945 kb on - strand, within MPMX19_01507 at 1577.945 kb on - strand, within MPMX19_01507 at 1577.945 kb on - strand, within MPMX19_01507 at 1577.945 kb on - strand, within MPMX19_01507 at 1577.945 kb on - strand, within MPMX19_01507 at 1577.945 kb on - strand, within MPMX19_01507 at 1578.060 kb on - strand, within MPMX19_01507 at 1578.121 kb on + strand, within MPMX19_01507 at 1578.121 kb on + strand, within MPMX19_01507 at 1578.121 kb on + strand, within MPMX19_01507 at 1578.121 kb on + strand, within MPMX19_01507 at 1578.121 kb on + strand, within MPMX19_01507 at 1578.121 kb on + strand, within MPMX19_01507 at 1578.121 kb on + strand, within MPMX19_01507 at 1578.121 kb on + strand, within MPMX19_01507 at 1578.121 kb on + strand, within MPMX19_01507 at 1578.121 kb on + strand, within MPMX19_01507 at 1578.121 kb on + strand, within MPMX19_01507 at 1578.121 kb on + strand, within MPMX19_01507 at 1578.121 kb on + strand, within MPMX19_01507 at 1578.122 kb on - strand, within MPMX19_01507 at 1578.122 kb on - strand, within MPMX19_01507 at 1578.122 kb on - strand, within MPMX19_01507 at 1578.122 kb on - strand, within MPMX19_01507 at 1578.122 kb on - strand, within MPMX19_01507 at 1578.122 kb on - strand, within MPMX19_01507 at 1578.122 kb on - strand, within MPMX19_01507 at 1578.122 kb on - strand, within MPMX19_01507 at 1578.122 kb on - strand, within MPMX19_01507 at 1578.122 kb on - strand, within MPMX19_01507 at 1578.122 kb on - strand, within MPMX19_01507 at 1578.536 kb on + strand at 1578.536 kb on + strand at 1578.536 kb on + strand at 1578.536 kb on + strand at 1578.537 kb on - strand at 1578.537 kb on - strand at 1578.541 kb on + strand at 1578.541 kb on + strand at 1578.541 kb on + strand at 1578.541 kb on + strand at 1578.541 kb on + strand at 1578.542 kb on - strand at 1578.542 kb on - strand at 1578.544 kb on + strand at 1578.544 kb on + strand at 1578.544 kb on + strand at 1578.545 kb on - strand at 1578.548 kb on + strand at 1578.548 kb on + strand at 1578.559 kb on + strand at 1578.589 kb on + strand at 1578.659 kb on + strand at 1578.741 kb on - strand at 1578.741 kb on - strand at 1578.794 kb on + strand at 1578.794 kb on + strand at 1578.794 kb on + strand at 1578.795 kb on - strand at 1578.862 kb on + strand at 1578.862 kb on + strand at 1578.862 kb on + strand at 1578.862 kb on + strand at 1578.863 kb on - strand at 1578.863 kb on - strand at 1578.890 kb on - strand at 1579.011 kb on + strand at 1579.011 kb on + strand at 1579.011 kb on + strand at 1579.012 kb on - strand at 1579.012 kb on - strand at 1579.170 kb on + strand, within MPMX19_01508 at 1579.170 kb on + strand, within MPMX19_01508 at 1579.443 kb on + strand, within MPMX19_01508 at 1579.467 kb on + strand, within MPMX19_01508 at 1579.468 kb on - strand, within MPMX19_01508 at 1579.468 kb on - strand, within MPMX19_01508 at 1579.468 kb on - strand, within MPMX19_01508 at 1579.706 kb on + strand, within MPMX19_01508 at 1579.706 kb on + strand, within MPMX19_01508 at 1579.706 kb on + strand, within MPMX19_01508 at 1579.707 kb on - strand, within MPMX19_01508 at 1579.707 kb on - strand, within MPMX19_01508
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 1,577,944 + MPMX19_01507 0.61 -2.2 1,577,945 - MPMX19_01507 0.61 +0.3 1,577,945 - MPMX19_01507 0.61 -0.3 1,577,945 - MPMX19_01507 0.61 -0.1 1,577,945 - MPMX19_01507 0.61 +0.4 1,577,945 - MPMX19_01507 0.61 -0.0 1,577,945 - MPMX19_01507 0.61 +0.7 1,577,945 - MPMX19_01507 0.61 +0.1 1,578,060 - MPMX19_01507 0.69 +1.7 1,578,121 + MPMX19_01507 0.73 -1.8 1,578,121 + MPMX19_01507 0.73 -0.5 1,578,121 + MPMX19_01507 0.73 +0.7 1,578,121 + MPMX19_01507 0.73 +0.4 1,578,121 + MPMX19_01507 0.73 +0.1 1,578,121 + MPMX19_01507 0.73 -1.2 1,578,121 + MPMX19_01507 0.73 -2.0 1,578,121 + MPMX19_01507 0.73 -0.9 1,578,121 + MPMX19_01507 0.73 -0.7 1,578,121 + MPMX19_01507 0.73 -0.1 1,578,121 + MPMX19_01507 0.73 +0.5 1,578,121 + MPMX19_01507 0.73 +0.5 1,578,121 + MPMX19_01507 0.73 -0.4 1,578,122 - MPMX19_01507 0.73 -1.7 1,578,122 - MPMX19_01507 0.73 -1.1 1,578,122 - MPMX19_01507 0.73 +0.9 1,578,122 - MPMX19_01507 0.73 +0.2 1,578,122 - MPMX19_01507 0.73 +1.1 1,578,122 - MPMX19_01507 0.73 -0.8 1,578,122 - MPMX19_01507 0.73 -0.9 1,578,122 - MPMX19_01507 0.73 +0.8 1,578,122 - MPMX19_01507 0.73 +0.1 1,578,122 - MPMX19_01507 0.73 -0.4 1,578,122 - MPMX19_01507 0.73 -0.7 1,578,536 + +0.1 1,578,536 + +0.1 1,578,536 + -0.1 1,578,536 + -1.9 1,578,537 - +0.7 1,578,537 - +1.9 1,578,541 + +1.1 1,578,541 + +0.2 1,578,541 + -1.1 1,578,541 + -1.1 1,578,541 + -1.3 1,578,542 - -1.1 1,578,542 - -0.5 1,578,544 + -0.3 1,578,544 + +2.4 1,578,544 + -0.7 1,578,545 - +1.4 1,578,548 + -1.5 1,578,548 + +0.3 1,578,559 + +0.5 1,578,589 + -0.9 1,578,659 + +0.3 1,578,741 - +0.2 1,578,741 - -1.2 1,578,794 + -0.7 1,578,794 + +0.5 1,578,794 + -1.8 1,578,795 - -1.0 1,578,862 + +0.5 1,578,862 + -1.7 1,578,862 + +0.1 1,578,862 + -2.6 1,578,863 - -0.3 1,578,863 - +0.1 1,578,890 - -1.1 1,579,011 + +1.3 1,579,011 + -0.7 1,579,011 + +0.3 1,579,012 - +1.2 1,579,012 - +0.7 1,579,170 + MPMX19_01508 0.23 -1.3 1,579,170 + MPMX19_01508 0.23 +0.4 1,579,443 + MPMX19_01508 0.47 -1.8 1,579,467 + MPMX19_01508 0.50 -0.1 1,579,468 - MPMX19_01508 0.50 -1.1 1,579,468 - MPMX19_01508 0.50 -0.4 1,579,468 - MPMX19_01508 0.50 +0.7 1,579,706 + MPMX19_01508 0.71 -0.9 1,579,706 + MPMX19_01508 0.71 -1.7 1,579,706 + MPMX19_01508 0.71 +0.3 1,579,707 - MPMX19_01508 0.71 -1.1 1,579,707 - MPMX19_01508 0.71 -1.3
Or see this region's nucleotide sequence