Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01490 and MPMX19_01491 overlap by 38 nucleotides MPMX19_01491 and MPMX19_01492 are separated by 253 nucleotides MPMX19_01492 and MPMX19_01493 are separated by 274 nucleotides MPMX19_01493 and MPMX19_01494 are separated by 230 nucleotides
MPMX19_01490: MPMX19_01490 - hypothetical protein, at 1,562,660 to 1,563,823
_01490
MPMX19_01491: MPMX19_01491 - hypothetical protein, at 1,563,786 to 1,564,004
_01491
MPMX19_01492: MPMX19_01492 - RNA polymerase-binding transcription factor DksA, at 1,564,258 to 1,564,677
_01492
MPMX19_01493: MPMX19_01493 - Flagellar assembly protein FliX, at 1,564,952 to 1,565,377
_01493
MPMX19_01494: MPMX19_01494 - Flagellar P-ring protein, at 1,565,608 to 1,566,750
_01494
Position (kb)
1564
1565 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1563.295 kb on - strand, within MPMX19_01490 at 1563.338 kb on + strand, within MPMX19_01490 at 1563.338 kb on + strand, within MPMX19_01490 at 1563.339 kb on - strand, within MPMX19_01490 at 1563.450 kb on - strand, within MPMX19_01490 at 1563.450 kb on - strand, within MPMX19_01490 at 1563.450 kb on - strand, within MPMX19_01490 at 1563.608 kb on + strand, within MPMX19_01490 at 1563.608 kb on + strand, within MPMX19_01490 at 1563.608 kb on + strand, within MPMX19_01490 at 1563.608 kb on + strand, within MPMX19_01490 at 1563.608 kb on + strand, within MPMX19_01490 at 1563.608 kb on + strand, within MPMX19_01490 at 1563.608 kb on + strand, within MPMX19_01490 at 1563.609 kb on - strand, within MPMX19_01490 at 1563.609 kb on - strand, within MPMX19_01490 at 1563.609 kb on - strand, within MPMX19_01490 at 1563.609 kb on - strand, within MPMX19_01490 at 1563.609 kb on - strand, within MPMX19_01490 at 1563.623 kb on - strand, within MPMX19_01490 at 1563.690 kb on - strand, within MPMX19_01490 at 1563.821 kb on + strand at 1563.821 kb on + strand at 1563.821 kb on + strand at 1563.821 kb on + strand at 1563.822 kb on - strand at 1563.822 kb on - strand at 1563.822 kb on - strand at 1563.822 kb on - strand at 1563.822 kb on - strand at 1563.971 kb on + strand, within MPMX19_01491 at 1563.971 kb on + strand, within MPMX19_01491 at 1563.972 kb on - strand, within MPMX19_01491 at 1564.379 kb on + strand, within MPMX19_01492 at 1564.379 kb on + strand, within MPMX19_01492 at 1564.379 kb on + strand, within MPMX19_01492 at 1564.379 kb on + strand, within MPMX19_01492 at 1564.380 kb on - strand, within MPMX19_01492 at 1564.380 kb on - strand, within MPMX19_01492 at 1564.380 kb on - strand, within MPMX19_01492 at 1564.380 kb on - strand, within MPMX19_01492 at 1564.380 kb on - strand, within MPMX19_01492 at 1564.385 kb on + strand, within MPMX19_01492 at 1564.385 kb on + strand, within MPMX19_01492 at 1564.385 kb on + strand, within MPMX19_01492 at 1564.385 kb on + strand, within MPMX19_01492 at 1564.386 kb on - strand, within MPMX19_01492 at 1564.386 kb on - strand, within MPMX19_01492 at 1564.386 kb on - strand, within MPMX19_01492 at 1564.386 kb on - strand, within MPMX19_01492 at 1564.386 kb on - strand, within MPMX19_01492 at 1564.601 kb on + strand, within MPMX19_01492 at 1564.601 kb on + strand, within MPMX19_01492 at 1564.602 kb on - strand, within MPMX19_01492 at 1564.602 kb on - strand, within MPMX19_01492 at 1564.602 kb on - strand, within MPMX19_01492 at 1564.602 kb on - strand, within MPMX19_01492 at 1564.602 kb on - strand, within MPMX19_01492 at 1564.649 kb on + strand at 1564.649 kb on + strand at 1564.649 kb on + strand at 1564.649 kb on + strand at 1564.649 kb on + strand at 1564.649 kb on + strand at 1564.650 kb on - strand at 1564.650 kb on - strand at 1564.650 kb on - strand at 1564.650 kb on - strand at 1564.650 kb on - strand at 1564.650 kb on - strand at 1564.650 kb on - strand at 1564.650 kb on - strand at 1564.650 kb on - strand at 1564.722 kb on + strand at 1564.722 kb on + strand at 1564.722 kb on + strand at 1564.722 kb on + strand at 1564.722 kb on + strand at 1564.722 kb on + strand at 1564.722 kb on + strand at 1564.723 kb on - strand at 1564.723 kb on - strand at 1564.723 kb on - strand at 1564.723 kb on - strand at 1564.723 kb on - strand at 1564.724 kb on + strand at 1564.724 kb on + strand at 1564.724 kb on + strand at 1564.724 kb on + strand at 1564.724 kb on + strand at 1564.724 kb on + strand at 1564.724 kb on + strand at 1564.724 kb on + strand at 1564.724 kb on + strand at 1564.724 kb on + strand at 1564.725 kb on - strand at 1564.725 kb on - strand at 1564.725 kb on - strand at 1564.725 kb on - strand at 1564.725 kb on - strand at 1564.725 kb on - strand at 1564.725 kb on - strand at 1564.725 kb on - strand at 1564.725 kb on - strand at 1564.725 kb on - strand at 1564.725 kb on - strand at 1564.725 kb on - strand at 1564.725 kb on - strand at 1564.725 kb on - strand at 1564.725 kb on - strand at 1564.725 kb on - strand at 1564.725 kb on - strand at 1564.725 kb on - strand at 1564.934 kb on + strand at 1564.934 kb on + strand at 1564.934 kb on + strand at 1564.934 kb on + strand at 1564.935 kb on - strand at 1564.935 kb on - strand at 1564.935 kb on - strand at 1564.935 kb on - strand at 1564.935 kb on - strand at 1564.935 kb on - strand at 1564.935 kb on - strand at 1565.092 kb on + strand, within MPMX19_01493 at 1565.092 kb on + strand, within MPMX19_01493 at 1565.093 kb on - strand, within MPMX19_01493 at 1565.093 kb on - strand, within MPMX19_01493 at 1565.093 kb on - strand, within MPMX19_01493 at 1565.093 kb on - strand, within MPMX19_01493 at 1565.351 kb on + strand at 1565.351 kb on + strand at 1565.351 kb on + strand at 1565.351 kb on + strand at 1565.351 kb on + strand at 1565.351 kb on + strand at 1565.351 kb on + strand at 1565.351 kb on + strand at 1565.352 kb on - strand at 1565.352 kb on - strand at 1565.352 kb on - strand at 1565.352 kb on - strand at 1565.352 kb on - strand at 1565.352 kb on - strand at 1565.352 kb on - strand at 1565.352 kb on - strand at 1565.352 kb on - strand at 1565.352 kb on - strand at 1565.352 kb on - strand at 1565.410 kb on + strand at 1565.410 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.425 kb on + strand at 1565.426 kb on - strand at 1565.426 kb on - strand at 1565.426 kb on - strand at 1565.426 kb on - strand at 1565.426 kb on - strand at 1565.426 kb on - strand at 1565.426 kb on - strand at 1565.426 kb on - strand at 1565.426 kb on - strand at 1565.426 kb on - strand at 1565.426 kb on - strand at 1565.426 kb on - strand at 1565.426 kb on - strand at 1565.426 kb on - strand at 1565.426 kb on - strand at 1565.426 kb on - strand at 1565.440 kb on + strand at 1565.440 kb on + strand at 1565.440 kb on + strand at 1565.440 kb on + strand at 1565.440 kb on + strand at 1565.440 kb on + strand at 1565.440 kb on + strand at 1565.440 kb on + strand at 1565.440 kb on + strand at 1565.441 kb on - strand at 1565.441 kb on - strand at 1565.441 kb on - strand at 1565.441 kb on - strand at 1565.441 kb on - strand at 1565.441 kb on - strand at 1565.441 kb on - strand at 1565.441 kb on - strand at 1565.507 kb on + strand at 1565.508 kb on - strand at 1565.508 kb on - strand at 1565.508 kb on - strand at 1565.549 kb on + strand at 1565.549 kb on + strand at 1565.549 kb on + strand at 1565.549 kb on + strand at 1565.550 kb on - strand at 1565.550 kb on - strand at 1565.550 kb on - strand at 1565.572 kb on + strand at 1565.572 kb on + strand at 1565.572 kb on + strand at 1565.572 kb on + strand at 1565.572 kb on + strand at 1565.572 kb on + strand at 1565.572 kb on + strand at 1565.572 kb on + strand at 1565.572 kb on + strand at 1565.572 kb on + strand at 1565.572 kb on + strand at 1565.572 kb on + strand at 1565.572 kb on + strand at 1565.572 kb on + strand at 1565.572 kb on + strand at 1565.573 kb on - strand at 1565.573 kb on - strand at 1565.573 kb on - strand at 1565.573 kb on - strand at 1565.573 kb on - strand at 1565.574 kb on + strand at 1565.574 kb on + strand at 1565.574 kb on + strand at 1565.574 kb on + strand at 1565.574 kb on + strand at 1565.575 kb on - strand at 1565.575 kb on - strand at 1565.575 kb on - strand at 1565.575 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 1,563,295 - MPMX19_01490 0.55 -0.5 1,563,338 + MPMX19_01490 0.58 -0.4 1,563,338 + MPMX19_01490 0.58 -1.5 1,563,339 - MPMX19_01490 0.58 -0.7 1,563,450 - MPMX19_01490 0.68 +0.2 1,563,450 - MPMX19_01490 0.68 -0.1 1,563,450 - MPMX19_01490 0.68 +0.1 1,563,608 + MPMX19_01490 0.81 -0.6 1,563,608 + MPMX19_01490 0.81 +0.2 1,563,608 + MPMX19_01490 0.81 +0.7 1,563,608 + MPMX19_01490 0.81 +0.7 1,563,608 + MPMX19_01490 0.81 +0.0 1,563,608 + MPMX19_01490 0.81 -1.6 1,563,608 + MPMX19_01490 0.81 -1.3 1,563,609 - MPMX19_01490 0.82 -0.0 1,563,609 - MPMX19_01490 0.82 -0.5 1,563,609 - MPMX19_01490 0.82 +1.7 1,563,609 - MPMX19_01490 0.82 -1.8 1,563,609 - MPMX19_01490 0.82 +0.2 1,563,623 - MPMX19_01490 0.83 +0.7 1,563,690 - MPMX19_01490 0.88 -1.2 1,563,821 + -0.1 1,563,821 + +0.3 1,563,821 + -0.8 1,563,821 + -0.9 1,563,822 - +1.1 1,563,822 - -0.8 1,563,822 - -0.3 1,563,822 - +2.0 1,563,822 - -0.1 1,563,971 + MPMX19_01491 0.84 -0.1 1,563,971 + MPMX19_01491 0.84 +0.7 1,563,972 - MPMX19_01491 0.85 -0.7 1,564,379 + MPMX19_01492 0.29 -0.8 1,564,379 + MPMX19_01492 0.29 -1.7 1,564,379 + MPMX19_01492 0.29 -0.7 1,564,379 + MPMX19_01492 0.29 +0.1 1,564,380 - MPMX19_01492 0.29 -0.3 1,564,380 - MPMX19_01492 0.29 +0.1 1,564,380 - MPMX19_01492 0.29 -1.5 1,564,380 - MPMX19_01492 0.29 -0.9 1,564,380 - MPMX19_01492 0.29 -0.3 1,564,385 + MPMX19_01492 0.30 -2.0 1,564,385 + MPMX19_01492 0.30 -0.9 1,564,385 + MPMX19_01492 0.30 -0.7 1,564,385 + MPMX19_01492 0.30 -1.3 1,564,386 - MPMX19_01492 0.30 -2.5 1,564,386 - MPMX19_01492 0.30 +0.9 1,564,386 - MPMX19_01492 0.30 -3.1 1,564,386 - MPMX19_01492 0.30 -2.1 1,564,386 - MPMX19_01492 0.30 +1.1 1,564,601 + MPMX19_01492 0.82 -1.1 1,564,601 + MPMX19_01492 0.82 +0.8 1,564,602 - MPMX19_01492 0.82 -0.7 1,564,602 - MPMX19_01492 0.82 -2.2 1,564,602 - MPMX19_01492 0.82 -1.3 1,564,602 - MPMX19_01492 0.82 -1.5 1,564,602 - MPMX19_01492 0.82 -2.0 1,564,649 + -1.0 1,564,649 + -1.8 1,564,649 + -0.7 1,564,649 + -0.8 1,564,649 + +1.7 1,564,649 + -2.3 1,564,650 - -1.5 1,564,650 - +0.1 1,564,650 - -1.8 1,564,650 - -0.7 1,564,650 - -1.5 1,564,650 - -0.3 1,564,650 - -1.0 1,564,650 - -0.4 1,564,650 - -1.3 1,564,722 + -1.3 1,564,722 + +0.9 1,564,722 + -0.8 1,564,722 + -1.7 1,564,722 + -0.5 1,564,722 + -2.0 1,564,722 + -1.7 1,564,723 - -0.8 1,564,723 - +0.6 1,564,723 - -0.7 1,564,723 - -1.0 1,564,723 - -0.8 1,564,724 + -2.0 1,564,724 + +0.1 1,564,724 + -1.1 1,564,724 + -1.0 1,564,724 + -0.9 1,564,724 + +0.7 1,564,724 + -0.7 1,564,724 + -1.9 1,564,724 + -0.7 1,564,724 + -0.7 1,564,725 - +1.8 1,564,725 - -3.1 1,564,725 - -0.3 1,564,725 - -0.2 1,564,725 - -1.1 1,564,725 - -1.5 1,564,725 - +0.4 1,564,725 - +1.2 1,564,725 - +0.7 1,564,725 - -0.8 1,564,725 - -0.9 1,564,725 - -0.5 1,564,725 - -1.3 1,564,725 - -1.0 1,564,725 - -1.1 1,564,725 - -0.1 1,564,725 - -0.8 1,564,725 - -0.8 1,564,934 + +0.2 1,564,934 + -1.9 1,564,934 + +0.8 1,564,934 + +0.4 1,564,935 - -0.4 1,564,935 - -1.7 1,564,935 - -0.0 1,564,935 - +0.2 1,564,935 - -0.3 1,564,935 - +0.1 1,564,935 - +0.3 1,565,092 + MPMX19_01493 0.33 -1.5 1,565,092 + MPMX19_01493 0.33 +0.8 1,565,093 - MPMX19_01493 0.33 +0.1 1,565,093 - MPMX19_01493 0.33 -0.4 1,565,093 - MPMX19_01493 0.33 +0.1 1,565,093 - MPMX19_01493 0.33 -0.9 1,565,351 + -0.8 1,565,351 + +0.4 1,565,351 + -1.4 1,565,351 + -0.9 1,565,351 + -0.9 1,565,351 + -0.7 1,565,351 + -0.6 1,565,351 + +0.8 1,565,352 - +0.7 1,565,352 - -2.3 1,565,352 - +0.2 1,565,352 - -0.7 1,565,352 - -0.1 1,565,352 - +0.2 1,565,352 - -2.7 1,565,352 - -0.5 1,565,352 - -2.1 1,565,352 - -1.1 1,565,352 - +0.7 1,565,410 + -0.5 1,565,410 + -1.8 1,565,425 + -0.5 1,565,425 + -0.8 1,565,425 + -0.7 1,565,425 + -1.3 1,565,425 + -0.1 1,565,425 + -1.1 1,565,425 + -0.8 1,565,425 + -0.5 1,565,425 + -0.9 1,565,425 + -0.0 1,565,425 + -0.7 1,565,425 + +0.1 1,565,425 + -0.1 1,565,425 + -0.6 1,565,425 + -1.2 1,565,425 + -1.6 1,565,425 + -1.5 1,565,425 + -1.9 1,565,425 + -0.4 1,565,425 + -1.1 1,565,425 + +0.7 1,565,426 - -0.0 1,565,426 - -1.1 1,565,426 - -0.1 1,565,426 - -1.5 1,565,426 - -0.6 1,565,426 - -0.2 1,565,426 - +1.0 1,565,426 - +0.5 1,565,426 - +0.0 1,565,426 - -0.3 1,565,426 - -0.7 1,565,426 - +0.9 1,565,426 - -0.1 1,565,426 - +0.6 1,565,426 - -1.0 1,565,426 - -1.4 1,565,440 + -1.3 1,565,440 + -0.3 1,565,440 + +0.8 1,565,440 + -0.9 1,565,440 + -0.4 1,565,440 + +0.3 1,565,440 + -0.7 1,565,440 + -1.7 1,565,440 + -0.5 1,565,441 - -0.7 1,565,441 - -0.7 1,565,441 - +1.0 1,565,441 - -0.3 1,565,441 - -2.3 1,565,441 - -0.1 1,565,441 - -0.8 1,565,441 - +0.7 1,565,507 + -2.1 1,565,508 - +0.5 1,565,508 - -0.7 1,565,508 - +1.3 1,565,549 + -0.9 1,565,549 + -0.3 1,565,549 + -0.8 1,565,549 + +0.2 1,565,550 - -1.5 1,565,550 - -0.9 1,565,550 - +0.3 1,565,572 + -0.7 1,565,572 + -1.5 1,565,572 + -0.2 1,565,572 + -0.8 1,565,572 + -1.6 1,565,572 + -0.8 1,565,572 + -1.3 1,565,572 + +0.2 1,565,572 + -0.6 1,565,572 + -0.2 1,565,572 + +0.3 1,565,572 + +0.3 1,565,572 + +0.1 1,565,572 + +0.9 1,565,572 + -0.0 1,565,573 - -0.7 1,565,573 - -1.7 1,565,573 - +1.3 1,565,573 - -2.0 1,565,573 - +0.3 1,565,574 + -0.4 1,565,574 + -0.5 1,565,574 + +1.3 1,565,574 + +0.7 1,565,574 + -0.8 1,565,575 - +0.2 1,565,575 - -1.1 1,565,575 - -1.0 1,565,575 - -1.0
Or see this region's nucleotide sequence