Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01390 and MPMX19_01391 are separated by 951 nucleotides MPMX19_01391 and MPMX19_01392 are separated by 97 nucleotides
MPMX19_01390: MPMX19_01390 - Transcriptional regulatory protein LnrK, at 1,455,130 to 1,455,771
_01390
MPMX19_01391: MPMX19_01391 - hypothetical protein, at 1,456,723 to 1,457,460
_01391
MPMX19_01392: MPMX19_01392 - hypothetical protein, at 1,457,558 to 1,459,558
_01392
Position (kb)
1456
1457
1458 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1455.997 kb on - strand at 1455.997 kb on - strand at 1455.997 kb on - strand at 1456.004 kb on - strand at 1456.004 kb on - strand at 1456.026 kb on + strand at 1456.043 kb on + strand at 1456.043 kb on + strand at 1456.043 kb on + strand at 1456.043 kb on + strand at 1456.043 kb on + strand at 1456.043 kb on + strand at 1456.043 kb on + strand at 1456.043 kb on + strand at 1456.044 kb on - strand at 1456.044 kb on - strand at 1456.122 kb on + strand at 1456.123 kb on - strand at 1456.144 kb on + strand at 1456.144 kb on + strand at 1456.144 kb on + strand at 1456.150 kb on + strand at 1456.219 kb on + strand at 1456.282 kb on + strand at 1456.283 kb on - strand at 1456.304 kb on + strand at 1456.304 kb on + strand at 1456.304 kb on + strand at 1456.305 kb on - strand at 1456.305 kb on - strand at 1456.305 kb on - strand at 1456.305 kb on - strand at 1456.358 kb on + strand at 1456.358 kb on + strand at 1456.358 kb on + strand at 1456.358 kb on + strand at 1456.404 kb on + strand at 1456.404 kb on + strand at 1456.404 kb on + strand at 1456.404 kb on + strand at 1456.404 kb on + strand at 1456.404 kb on + strand at 1456.404 kb on + strand at 1456.404 kb on + strand at 1456.404 kb on + strand at 1456.404 kb on + strand at 1456.404 kb on + strand at 1456.404 kb on + strand at 1456.404 kb on + strand at 1456.405 kb on - strand at 1456.405 kb on - strand at 1456.405 kb on - strand at 1456.405 kb on - strand at 1456.405 kb on - strand at 1456.405 kb on - strand at 1456.405 kb on - strand at 1456.405 kb on - strand at 1456.405 kb on - strand at 1456.405 kb on - strand at 1456.405 kb on - strand at 1456.405 kb on - strand at 1456.412 kb on - strand at 1456.506 kb on - strand at 1456.506 kb on - strand at 1456.573 kb on + strand at 1456.573 kb on + strand at 1456.573 kb on + strand at 1456.574 kb on - strand at 1456.574 kb on - strand at 1456.591 kb on - strand at 1456.591 kb on - strand at 1456.591 kb on - strand at 1456.591 kb on - strand at 1456.657 kb on + strand at 1456.657 kb on + strand at 1456.658 kb on - strand at 1456.741 kb on + strand at 1456.741 kb on + strand at 1456.741 kb on + strand at 1456.741 kb on + strand at 1456.741 kb on + strand at 1456.741 kb on + strand at 1456.741 kb on + strand at 1456.741 kb on + strand at 1456.741 kb on + strand at 1456.742 kb on - strand at 1456.742 kb on - strand at 1456.742 kb on - strand at 1456.742 kb on - strand at 1456.742 kb on - strand at 1456.742 kb on - strand at 1456.742 kb on - strand at 1456.742 kb on - strand at 1456.742 kb on - strand at 1456.742 kb on - strand at 1456.742 kb on - strand at 1456.742 kb on - strand at 1456.742 kb on - strand at 1456.742 kb on - strand at 1456.981 kb on + strand, within MPMX19_01391 at 1456.981 kb on + strand, within MPMX19_01391 at 1456.981 kb on + strand, within MPMX19_01391 at 1456.981 kb on + strand, within MPMX19_01391 at 1456.981 kb on + strand, within MPMX19_01391 at 1456.981 kb on + strand, within MPMX19_01391 at 1456.981 kb on + strand, within MPMX19_01391 at 1456.981 kb on + strand, within MPMX19_01391 at 1456.981 kb on + strand, within MPMX19_01391 at 1456.981 kb on + strand, within MPMX19_01391 at 1456.981 kb on + strand, within MPMX19_01391 at 1456.981 kb on + strand, within MPMX19_01391 at 1456.982 kb on - strand, within MPMX19_01391 at 1456.982 kb on - strand, within MPMX19_01391 at 1456.982 kb on - strand, within MPMX19_01391 at 1456.982 kb on - strand, within MPMX19_01391 at 1457.052 kb on + strand, within MPMX19_01391 at 1457.053 kb on - strand, within MPMX19_01391 at 1457.053 kb on - strand, within MPMX19_01391 at 1457.053 kb on - strand, within MPMX19_01391 at 1457.678 kb on + strand at 1457.678 kb on + strand at 1457.679 kb on - strand at 1457.996 kb on + strand, within MPMX19_01392 at 1457.996 kb on + strand, within MPMX19_01392 at 1457.997 kb on - strand, within MPMX19_01392 at 1457.997 kb on - strand, within MPMX19_01392 at 1457.997 kb on - strand, within MPMX19_01392 at 1457.997 kb on - strand, within MPMX19_01392 at 1457.997 kb on - strand, within MPMX19_01392 at 1457.997 kb on - strand, within MPMX19_01392 at 1457.997 kb on - strand, within MPMX19_01392 at 1457.997 kb on - strand, within MPMX19_01392
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 1,455,997 - -1.8 1,455,997 - -0.5 1,455,997 - +1.3 1,456,004 - +0.7 1,456,004 - -1.0 1,456,026 + +0.5 1,456,043 + -0.4 1,456,043 + -1.0 1,456,043 + +0.7 1,456,043 + +0.0 1,456,043 + +0.1 1,456,043 + +0.5 1,456,043 + -0.6 1,456,043 + -0.9 1,456,044 - +0.6 1,456,044 - -1.3 1,456,122 + -1.6 1,456,123 - -0.3 1,456,144 + +2.5 1,456,144 + +0.8 1,456,144 + +0.5 1,456,150 + +0.1 1,456,219 + -0.8 1,456,282 + +0.1 1,456,283 - -0.2 1,456,304 + +2.4 1,456,304 + -2.2 1,456,304 + +0.1 1,456,305 - -1.9 1,456,305 - +0.4 1,456,305 - -0.2 1,456,305 - -0.6 1,456,358 + +0.1 1,456,358 + +0.2 1,456,358 + -1.5 1,456,358 + -1.9 1,456,404 + -1.0 1,456,404 + +1.5 1,456,404 + -1.3 1,456,404 + -1.8 1,456,404 + -1.6 1,456,404 + +2.0 1,456,404 + -0.3 1,456,404 + -1.1 1,456,404 + -0.4 1,456,404 + -1.3 1,456,404 + +0.8 1,456,404 + -0.3 1,456,404 + +1.1 1,456,405 - +1.1 1,456,405 - +1.7 1,456,405 - -1.8 1,456,405 - +0.3 1,456,405 - -0.2 1,456,405 - +0.7 1,456,405 - +0.2 1,456,405 - -2.1 1,456,405 - +0.8 1,456,405 - -0.7 1,456,405 - +0.6 1,456,405 - -0.6 1,456,412 - -1.6 1,456,506 - +0.1 1,456,506 - +0.4 1,456,573 + +0.2 1,456,573 + -0.3 1,456,573 + +1.3 1,456,574 - -0.0 1,456,574 - -2.1 1,456,591 - -0.0 1,456,591 - +0.1 1,456,591 - -2.0 1,456,591 - -0.3 1,456,657 + -0.1 1,456,657 + -1.9 1,456,658 - -0.2 1,456,741 + -1.3 1,456,741 + -0.1 1,456,741 + -0.1 1,456,741 + -0.9 1,456,741 + -0.1 1,456,741 + +0.7 1,456,741 + -1.0 1,456,741 + -1.6 1,456,741 + -0.5 1,456,742 - -2.6 1,456,742 - -0.9 1,456,742 - -0.7 1,456,742 - -0.2 1,456,742 - -1.5 1,456,742 - +0.2 1,456,742 - -0.7 1,456,742 - -0.8 1,456,742 - -0.5 1,456,742 - -1.0 1,456,742 - -1.3 1,456,742 - -1.5 1,456,742 - +0.1 1,456,742 - -0.3 1,456,981 + MPMX19_01391 0.35 +1.7 1,456,981 + MPMX19_01391 0.35 +1.0 1,456,981 + MPMX19_01391 0.35 -0.1 1,456,981 + MPMX19_01391 0.35 +1.3 1,456,981 + MPMX19_01391 0.35 +0.1 1,456,981 + MPMX19_01391 0.35 -0.5 1,456,981 + MPMX19_01391 0.35 -0.7 1,456,981 + MPMX19_01391 0.35 -0.0 1,456,981 + MPMX19_01391 0.35 -1.2 1,456,981 + MPMX19_01391 0.35 +1.3 1,456,981 + MPMX19_01391 0.35 -2.3 1,456,981 + MPMX19_01391 0.35 -0.9 1,456,982 - MPMX19_01391 0.35 -0.2 1,456,982 - MPMX19_01391 0.35 -1.3 1,456,982 - MPMX19_01391 0.35 -1.6 1,456,982 - MPMX19_01391 0.35 -0.2 1,457,052 + MPMX19_01391 0.45 +0.0 1,457,053 - MPMX19_01391 0.45 -0.5 1,457,053 - MPMX19_01391 0.45 +1.3 1,457,053 - MPMX19_01391 0.45 +0.7 1,457,678 + -1.4 1,457,678 + +0.3 1,457,679 - -0.6 1,457,996 + MPMX19_01392 0.22 +0.3 1,457,996 + MPMX19_01392 0.22 -2.1 1,457,997 - MPMX19_01392 0.22 +0.1 1,457,997 - MPMX19_01392 0.22 -0.1 1,457,997 - MPMX19_01392 0.22 -0.0 1,457,997 - MPMX19_01392 0.22 -1.5 1,457,997 - MPMX19_01392 0.22 +0.6 1,457,997 - MPMX19_01392 0.22 -0.5 1,457,997 - MPMX19_01392 0.22 -1.5 1,457,997 - MPMX19_01392 0.22 -1.6
Or see this region's nucleotide sequence