Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01217 and MPMX19_01218 are separated by 4 nucleotides MPMX19_01218 and MPMX19_01219 are separated by 30 nucleotides MPMX19_01219 and MPMX19_01220 are separated by 36 nucleotides
MPMX19_01217: MPMX19_01217 - Ribosomal RNA small subunit methyltransferase C, at 1,267,438 to 1,268,460
_01217
MPMX19_01218: MPMX19_01218 - SsrA-binding protein, at 1,268,465 to 1,268,938
_01218
MPMX19_01219: MPMX19_01219 - 4-hydroxy-tetrahydrodipicolinate synthase, at 1,268,969 to 1,269,844
_01219
MPMX19_01220: MPMX19_01220 - hypothetical protein, at 1,269,881 to 1,271,866
_01220
Position (kb)
1268
1269 Strain fitness (log2 ratio)
-2
-1
0
1 at 1267.577 kb on + strand, within MPMX19_01217 at 1267.577 kb on + strand, within MPMX19_01217 at 1267.577 kb on + strand, within MPMX19_01217 at 1267.577 kb on + strand, within MPMX19_01217 at 1267.577 kb on + strand, within MPMX19_01217 at 1267.577 kb on + strand, within MPMX19_01217 at 1267.578 kb on - strand, within MPMX19_01217 at 1267.578 kb on - strand, within MPMX19_01217 at 1267.578 kb on - strand, within MPMX19_01217 at 1267.578 kb on - strand, within MPMX19_01217 at 1267.934 kb on + strand, within MPMX19_01217 at 1268.466 kb on + strand at 1268.466 kb on + strand at 1268.466 kb on + strand at 1268.467 kb on - strand at 1268.467 kb on - strand at 1268.467 kb on - strand at 1268.950 kb on - strand at 1268.950 kb on - strand at 1268.950 kb on - strand at 1268.950 kb on - strand at 1268.950 kb on - strand at 1268.950 kb on - strand at 1268.950 kb on - strand at 1268.952 kb on - strand at 1268.952 kb on - strand at 1268.952 kb on - strand at 1269.866 kb on - strand at 1269.866 kb on - strand at 1269.866 kb on - strand at 1269.866 kb on - strand at 1269.866 kb on - strand at 1269.892 kb on - strand at 1269.892 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 1,267,577 + MPMX19_01217 0.14 +0.9 1,267,577 + MPMX19_01217 0.14 -0.5 1,267,577 + MPMX19_01217 0.14 -1.3 1,267,577 + MPMX19_01217 0.14 +0.7 1,267,577 + MPMX19_01217 0.14 -2.0 1,267,577 + MPMX19_01217 0.14 +0.7 1,267,578 - MPMX19_01217 0.14 -1.8 1,267,578 - MPMX19_01217 0.14 -0.5 1,267,578 - MPMX19_01217 0.14 -0.8 1,267,578 - MPMX19_01217 0.14 -0.1 1,267,934 + MPMX19_01217 0.48 +0.1 1,268,466 + -1.3 1,268,466 + -0.9 1,268,466 + -0.7 1,268,467 - -0.8 1,268,467 - -1.3 1,268,467 - -0.4 1,268,950 - +0.7 1,268,950 - +0.1 1,268,950 - +0.7 1,268,950 - -0.3 1,268,950 - +0.4 1,268,950 - -0.2 1,268,950 - +0.1 1,268,952 - -1.1 1,268,952 - -0.5 1,268,952 - -2.2 1,269,866 - +1.1 1,269,866 - -0.6 1,269,866 - -1.3 1,269,866 - +0.9 1,269,866 - -0.3 1,269,892 - -0.6 1,269,892 - -0.5
Or see this region's nucleotide sequence