Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00852

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00851 and MPMX19_00852 are separated by 4 nucleotidesMPMX19_00852 and MPMX19_00853 overlap by 4 nucleotidesMPMX19_00853 and MPMX19_00854 are separated by 1 nucleotides MPMX19_00851: MPMX19_00851 - hypothetical protein, at 882,680 to 883,387 _00851 MPMX19_00852: MPMX19_00852 - hypothetical protein, at 883,392 to 884,246 _00852 MPMX19_00853: MPMX19_00853 - hypothetical protein, at 884,243 to 884,974 _00853 MPMX19_00854: MPMX19_00854 - hypothetical protein, at 884,976 to 888,590 _00854 Position (kb) 883 884 885Strain fitness (log2 ratio) -3 -2 -1 0 1at 882.489 kb on - strandat 882.498 kb on + strandat 882.498 kb on + strandat 882.498 kb on + strandat 882.498 kb on + strandat 882.499 kb on - strandat 882.499 kb on - strandat 882.499 kb on - strandat 882.499 kb on - strandat 882.499 kb on - strandat 882.499 kb on - strandat 882.499 kb on - strandat 882.512 kb on + strandat 882.513 kb on - strandat 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.852 kb on - strand, within MPMX19_00851at 882.852 kb on - strand, within MPMX19_00851at 882.852 kb on - strand, within MPMX19_00851at 882.852 kb on - strand, within MPMX19_00851at 882.852 kb on - strand, within MPMX19_00851at 882.852 kb on - strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 883.094 kb on + strand, within MPMX19_00851at 883.094 kb on + strand, within MPMX19_00851at 883.094 kb on + strand, within MPMX19_00851at 883.095 kb on - strand, within MPMX19_00851at 883.095 kb on - strand, within MPMX19_00851at 883.095 kb on - strand, within MPMX19_00851at 883.095 kb on - strand, within MPMX19_00851at 883.095 kb on - strand, within MPMX19_00851at 883.095 kb on - strand, within MPMX19_00851at 883.515 kb on - strand, within MPMX19_00852at 884.122 kb on + strand, within MPMX19_00852at 884.122 kb on + strand, within MPMX19_00852at 884.122 kb on + strand, within MPMX19_00852at 884.123 kb on - strand, within MPMX19_00852at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.344 kb on + strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.345 kb on - strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.369 kb on + strand, within MPMX19_00853at 884.370 kb on - strand, within MPMX19_00853at 884.370 kb on - strand, within MPMX19_00853at 884.370 kb on - strand, within MPMX19_00853at 884.370 kb on - strand, within MPMX19_00853at 884.370 kb on - strand, within MPMX19_00853at 884.370 kb on - strand, within MPMX19_00853at 884.370 kb on - strand, within MPMX19_00853at 884.370 kb on - strand, within MPMX19_00853at 884.370 kb on - strand, within MPMX19_00853at 884.540 kb on + strand, within MPMX19_00853at 884.540 kb on + strand, within MPMX19_00853at 884.540 kb on + strand, within MPMX19_00853at 884.540 kb on + strand, within MPMX19_00853at 884.540 kb on + strand, within MPMX19_00853at 884.540 kb on + strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.541 kb on - strand, within MPMX19_00853at 884.598 kb on - strand, within MPMX19_00853

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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882,489 - +0.5
882,498 + +0.1
882,498 + -0.8
882,498 + -1.7
882,498 + -1.7
882,499 - +0.1
882,499 - -0.1
882,499 - -0.9
882,499 - +0.7
882,499 - +0.5
882,499 - -0.2
882,499 - -0.1
882,512 + +0.2
882,513 - -0.5
882,851 + MPMX19_00851 0.24 -1.7
882,851 + MPMX19_00851 0.24 -0.7
882,851 + MPMX19_00851 0.24 -1.9
882,851 + MPMX19_00851 0.24 +0.3
882,851 + MPMX19_00851 0.24 +0.1
882,851 + MPMX19_00851 0.24 -0.9
882,851 + MPMX19_00851 0.24 +0.0
882,851 + MPMX19_00851 0.24 -1.1
882,851 + MPMX19_00851 0.24 -0.1
882,851 + MPMX19_00851 0.24 -0.4
882,851 + MPMX19_00851 0.24 -1.1
882,851 + MPMX19_00851 0.24 -1.0
882,851 + MPMX19_00851 0.24 +0.1
882,851 + MPMX19_00851 0.24 -1.0
882,851 + MPMX19_00851 0.24 -2.0
882,852 - MPMX19_00851 0.24 -0.5
882,852 - MPMX19_00851 0.24 -0.2
882,852 - MPMX19_00851 0.24 -0.1
882,852 - MPMX19_00851 0.24 -1.1
882,852 - MPMX19_00851 0.24 +0.3
882,852 - MPMX19_00851 0.24 -1.1
882,878 + MPMX19_00851 0.28 +0.3
882,878 + MPMX19_00851 0.28 -0.3
882,878 + MPMX19_00851 0.28 -0.5
882,878 + MPMX19_00851 0.28 -1.0
882,878 + MPMX19_00851 0.28 -0.2
882,878 + MPMX19_00851 0.28 -1.1
882,878 + MPMX19_00851 0.28 +0.1
882,878 + MPMX19_00851 0.28 +0.1
882,878 + MPMX19_00851 0.28 -0.3
882,878 + MPMX19_00851 0.28 -0.2
882,879 - MPMX19_00851 0.28 -1.3
882,879 - MPMX19_00851 0.28 +0.0
882,879 - MPMX19_00851 0.28 -1.3
882,879 - MPMX19_00851 0.28 +0.3
882,879 - MPMX19_00851 0.28 -0.3
882,879 - MPMX19_00851 0.28 -0.2
882,879 - MPMX19_00851 0.28 -2.5
882,879 - MPMX19_00851 0.28 -2.0
882,879 - MPMX19_00851 0.28 +0.1
882,879 - MPMX19_00851 0.28 -0.0
883,094 + MPMX19_00851 0.58 -0.8
883,094 + MPMX19_00851 0.58 -1.5
883,094 + MPMX19_00851 0.58 -0.4
883,095 - MPMX19_00851 0.59 +0.3
883,095 - MPMX19_00851 0.59 -0.4
883,095 - MPMX19_00851 0.59 -1.1
883,095 - MPMX19_00851 0.59 +0.1
883,095 - MPMX19_00851 0.59 +0.2
883,095 - MPMX19_00851 0.59 -0.1
883,515 - MPMX19_00852 0.14 +0.7
884,122 + MPMX19_00852 0.85 +0.3
884,122 + MPMX19_00852 0.85 +0.8
884,122 + MPMX19_00852 0.85 -0.7
884,123 - MPMX19_00852 0.85 -0.2
884,344 + MPMX19_00853 0.14 -1.0
884,344 + MPMX19_00853 0.14 +0.3
884,344 + MPMX19_00853 0.14 -0.3
884,344 + MPMX19_00853 0.14 -0.3
884,344 + MPMX19_00853 0.14 +1.1
884,344 + MPMX19_00853 0.14 -0.7
884,344 + MPMX19_00853 0.14 -0.5
884,344 + MPMX19_00853 0.14 -0.2
884,344 + MPMX19_00853 0.14 -0.6
884,344 + MPMX19_00853 0.14 -0.2
884,344 + MPMX19_00853 0.14 -0.1
884,344 + MPMX19_00853 0.14 -0.6
884,344 + MPMX19_00853 0.14 -2.0
884,344 + MPMX19_00853 0.14 -1.2
884,344 + MPMX19_00853 0.14 +0.0
884,344 + MPMX19_00853 0.14 -0.9
884,344 + MPMX19_00853 0.14 -0.8
884,344 + MPMX19_00853 0.14 -0.3
884,345 - MPMX19_00853 0.14 -1.0
884,345 - MPMX19_00853 0.14 +0.2
884,345 - MPMX19_00853 0.14 -1.3
884,345 - MPMX19_00853 0.14 -1.3
884,345 - MPMX19_00853 0.14 -2.0
884,345 - MPMX19_00853 0.14 -1.1
884,345 - MPMX19_00853 0.14 -2.2
884,345 - MPMX19_00853 0.14 +0.2
884,345 - MPMX19_00853 0.14 +0.5
884,345 - MPMX19_00853 0.14 -3.3
884,345 - MPMX19_00853 0.14 +0.1
884,345 - MPMX19_00853 0.14 +0.6
884,345 - MPMX19_00853 0.14 -0.4
884,345 - MPMX19_00853 0.14 -0.8
884,345 - MPMX19_00853 0.14 +1.3
884,345 - MPMX19_00853 0.14 +0.1
884,345 - MPMX19_00853 0.14 +0.8
884,345 - MPMX19_00853 0.14 -0.7
884,345 - MPMX19_00853 0.14 +0.7
884,345 - MPMX19_00853 0.14 -0.4
884,345 - MPMX19_00853 0.14 -0.7
884,345 - MPMX19_00853 0.14 -1.3
884,345 - MPMX19_00853 0.14 +1.4
884,345 - MPMX19_00853 0.14 -0.2
884,345 - MPMX19_00853 0.14 -0.3
884,345 - MPMX19_00853 0.14 -1.3
884,345 - MPMX19_00853 0.14 -0.8
884,369 + MPMX19_00853 0.17 +0.7
884,369 + MPMX19_00853 0.17 -0.1
884,369 + MPMX19_00853 0.17 -0.7
884,369 + MPMX19_00853 0.17 -0.1
884,369 + MPMX19_00853 0.17 +0.4
884,369 + MPMX19_00853 0.17 -0.2
884,369 + MPMX19_00853 0.17 -0.3
884,369 + MPMX19_00853 0.17 -0.4
884,369 + MPMX19_00853 0.17 -0.3
884,369 + MPMX19_00853 0.17 -1.8
884,369 + MPMX19_00853 0.17 -1.0
884,370 - MPMX19_00853 0.17 +0.6
884,370 - MPMX19_00853 0.17 -1.3
884,370 - MPMX19_00853 0.17 -2.6
884,370 - MPMX19_00853 0.17 -0.6
884,370 - MPMX19_00853 0.17 +0.4
884,370 - MPMX19_00853 0.17 -0.2
884,370 - MPMX19_00853 0.17 -0.8
884,370 - MPMX19_00853 0.17 -0.1
884,370 - MPMX19_00853 0.17 -0.0
884,540 + MPMX19_00853 0.41 -1.7
884,540 + MPMX19_00853 0.41 -1.4
884,540 + MPMX19_00853 0.41 -0.2
884,540 + MPMX19_00853 0.41 +1.2
884,540 + MPMX19_00853 0.41 +0.7
884,540 + MPMX19_00853 0.41 -1.0
884,541 - MPMX19_00853 0.41 -2.8
884,541 - MPMX19_00853 0.41 -0.5
884,541 - MPMX19_00853 0.41 -0.0
884,541 - MPMX19_00853 0.41 +0.3
884,541 - MPMX19_00853 0.41 -0.8
884,541 - MPMX19_00853 0.41 -0.7
884,541 - MPMX19_00853 0.41 +1.3
884,541 - MPMX19_00853 0.41 -0.4
884,541 - MPMX19_00853 0.41 -0.0
884,541 - MPMX19_00853 0.41 -0.7
884,598 - MPMX19_00853 0.48 -0.7

Or see this region's nucleotide sequence