Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00682 and MPMX19_00683 are separated by 145 nucleotides MPMX19_00683 and MPMX19_00684 are separated by 3 nucleotides MPMX19_00684 and MPMX19_00685 are separated by 167 nucleotides MPMX19_00685 and MPMX19_00686 are separated by 110 nucleotides
MPMX19_00682: MPMX19_00682 - putative membrane transporter protein YfcA, at 705,076 to 705,882
_00682
MPMX19_00683: MPMX19_00683 - Thiamine-phosphate synthase, at 706,028 to 706,699
_00683
MPMX19_00684: MPMX19_00684 - Fructose-bisphosphate aldolase class 1, at 706,703 to 707,632
_00684
MPMX19_00685: MPMX19_00685 - hypothetical protein, at 707,800 to 708,036
_00685
MPMX19_00686: MPMX19_00686 - hypothetical protein, at 708,147 to 708,788
_00686
Position (kb) 706
707
708 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.902 kb on + strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.903 kb on - strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.953 kb on + strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.954 kb on - strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.956 kb on + strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.957 kb on - strand at 705.999 kb on + strand at 707.714 kb on + strand at 707.714 kb on + strand at 707.714 kb on + strand at 707.714 kb on + strand at 707.715 kb on - strand at 707.715 kb on - strand at 707.715 kb on - strand at 707.715 kb on - strand at 707.715 kb on - strand at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.828 kb on + strand, within MPMX19_00685 at 707.829 kb on - strand, within MPMX19_00685 at 707.829 kb on - strand, within MPMX19_00685 at 707.829 kb on - strand, within MPMX19_00685 at 707.829 kb on - strand, within MPMX19_00685 at 707.829 kb on - strand, within MPMX19_00685 at 707.829 kb on - strand, within MPMX19_00685 at 707.838 kb on - strand, within MPMX19_00685 at 707.838 kb on - strand, within MPMX19_00685 at 708.087 kb on + strand at 708.088 kb on - strand at 708.088 kb on - strand at 708.088 kb on - strand at 708.098 kb on + strand at 708.098 kb on + strand at 708.098 kb on + strand at 708.098 kb on + strand at 708.098 kb on + strand at 708.098 kb on + strand at 708.098 kb on + strand at 708.099 kb on - strand at 708.099 kb on - strand at 708.099 kb on - strand at 708.099 kb on - strand at 708.099 kb on - strand at 708.137 kb on + strand at 708.180 kb on + strand at 708.181 kb on - strand at 708.181 kb on - strand at 708.181 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 705,902 + -0.6 705,902 + -1.6 705,902 + +0.3 705,902 + -1.3 705,902 + -0.2 705,902 + +0.9 705,902 + -1.5 705,902 + +0.9 705,902 + -0.2 705,902 + -0.6 705,902 + +0.5 705,902 + -0.5 705,902 + +0.7 705,903 - +1.3 705,903 - -0.6 705,903 - -0.0 705,903 - -0.1 705,903 - +0.2 705,903 - +0.2 705,903 - -0.4 705,903 - -1.8 705,953 + +1.2 705,953 + -0.3 705,953 + -1.5 705,953 + -0.2 705,953 + +0.2 705,953 + -0.4 705,953 + -0.6 705,953 + +0.4 705,953 + +0.7 705,953 + -0.5 705,953 + +0.2 705,953 + -1.2 705,953 + -1.8 705,953 + -1.9 705,953 + +0.4 705,953 + +0.1 705,954 - +1.7 705,954 - +0.4 705,954 - +1.0 705,954 - -1.1 705,954 - -0.0 705,954 - -0.9 705,954 - +0.7 705,954 - -0.3 705,954 - -1.5 705,954 - -0.8 705,954 - -1.3 705,956 + -0.6 705,956 + -0.6 705,956 + -0.2 705,956 + -1.3 705,956 + +0.2 705,956 + +0.4 705,956 + -1.1 705,956 + -2.5 705,956 + -2.6 705,957 - -0.3 705,957 - -0.9 705,957 - +1.7 705,957 - -0.8 705,957 - +0.2 705,957 - +0.9 705,957 - -2.7 705,957 - -0.2 705,957 - -1.3 705,957 - -0.6 705,957 - -1.8 705,957 - +0.7 705,957 - +0.1 705,957 - -3.2 705,957 - +1.2 705,957 - +0.3 705,957 - -0.6 705,957 - -0.8 705,999 + +0.1 707,714 + -0.6 707,714 + +0.4 707,714 + +0.5 707,714 + -0.9 707,715 - -0.1 707,715 - -0.8 707,715 - -0.6 707,715 - -0.3 707,715 - -0.6 707,828 + MPMX19_00685 0.12 -0.7 707,828 + MPMX19_00685 0.12 -0.9 707,828 + MPMX19_00685 0.12 -1.1 707,828 + MPMX19_00685 0.12 -0.2 707,828 + MPMX19_00685 0.12 -0.6 707,828 + MPMX19_00685 0.12 -0.3 707,828 + MPMX19_00685 0.12 -2.0 707,828 + MPMX19_00685 0.12 +0.7 707,828 + MPMX19_00685 0.12 -0.5 707,828 + MPMX19_00685 0.12 -0.5 707,828 + MPMX19_00685 0.12 -1.0 707,829 - MPMX19_00685 0.12 +1.3 707,829 - MPMX19_00685 0.12 -1.9 707,829 - MPMX19_00685 0.12 +1.4 707,829 - MPMX19_00685 0.12 -1.5 707,829 - MPMX19_00685 0.12 -0.8 707,829 - MPMX19_00685 0.12 -0.4 707,838 - MPMX19_00685 0.16 -0.9 707,838 - MPMX19_00685 0.16 -0.5 708,087 + -1.1 708,088 - -0.1 708,088 - -0.2 708,088 - -1.3 708,098 + -0.1 708,098 + -0.8 708,098 + -0.1 708,098 + +1.5 708,098 + +0.6 708,098 + -0.6 708,098 + +1.4 708,099 - -0.9 708,099 - -1.1 708,099 - -0.2 708,099 - -1.2 708,099 - +0.3 708,137 + -0.2 708,180 + +0.5 708,181 - -1.2 708,181 - -1.2 708,181 - -0.5
Or see this region's nucleotide sequence