Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00680

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00679 and MPMX19_00680 are separated by 369 nucleotidesMPMX19_00680 and MPMX19_00681 are separated by 65 nucleotides MPMX19_00679: MPMX19_00679 - Elongation factor P, at 701,421 to 701,987 _00679 MPMX19_00680: MPMX19_00680 - Elongation factor P--(R)-beta-lysine ligase, at 702,357 to 703,424 _00680 MPMX19_00681: MPMX19_00681 - 47 kDa outer membrane protein, at 703,490 to 704,818 _00681 Position (kb) 702 703 704Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 701.364 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strandat 701.364 kb on - strandat 702.012 kb on - strandat 702.012 kb on - strandat 702.012 kb on - strandat 702.127 kb on + strandat 702.127 kb on + strandat 702.128 kb on - strandat 702.128 kb on - strandat 702.128 kb on - strandat 702.249 kb on + strandat 702.249 kb on + strandat 702.249 kb on + strandat 702.249 kb on + strandat 702.249 kb on + strandat 702.249 kb on + strandat 702.250 kb on - strandat 702.291 kb on + strandat 702.291 kb on + strandat 702.292 kb on - strandat 702.898 kb on - strand, within MPMX19_00680at 702.924 kb on + strand, within MPMX19_00680at 702.924 kb on + strand, within MPMX19_00680at 702.924 kb on + strand, within MPMX19_00680at 702.924 kb on + strand, within MPMX19_00680at 702.925 kb on - strand, within MPMX19_00680at 703.162 kb on - strand, within MPMX19_00680at 703.162 kb on - strand, within MPMX19_00680at 703.263 kb on + strand, within MPMX19_00680at 703.263 kb on + strand, within MPMX19_00680at 703.264 kb on - strand, within MPMX19_00680at 703.422 kb on + strandat 703.422 kb on + strandat 703.422 kb on + strandat 703.422 kb on + strandat 703.422 kb on + strandat 703.422 kb on + strandat 703.422 kb on + strandat 703.422 kb on + strandat 703.422 kb on + strandat 703.422 kb on + strandat 703.422 kb on + strandat 703.423 kb on - strandat 703.423 kb on - strandat 703.423 kb on - strandat 703.423 kb on - strandat 703.423 kb on - strandat 703.423 kb on - strandat 703.423 kb on - strandat 703.423 kb on - strandat 703.423 kb on - strandat 703.423 kb on - strandat 703.423 kb on - strandat 703.491 kb on + strandat 703.491 kb on + strandat 703.491 kb on + strandat 703.491 kb on + strandat 703.491 kb on + strandat 703.491 kb on + strandat 703.491 kb on + strandat 703.491 kb on + strandat 703.492 kb on - strandat 703.492 kb on - strandat 703.492 kb on - strandat 703.492 kb on - strandat 703.492 kb on - strandat 703.492 kb on - strandat 703.539 kb on + strandat 703.539 kb on + strandat 703.539 kb on + strandat 703.539 kb on + strandat 703.539 kb on + strandat 703.539 kb on + strandat 703.539 kb on + strandat 703.539 kb on + strandat 703.539 kb on + strandat 703.539 kb on + strandat 703.539 kb on + strandat 703.539 kb on + strandat 703.540 kb on - strandat 703.540 kb on - strandat 703.540 kb on - strandat 703.540 kb on - strandat 703.540 kb on - strandat 703.540 kb on - strandat 703.540 kb on - strandat 703.540 kb on - strandat 703.540 kb on - strandat 703.540 kb on - strandat 703.540 kb on - strandat 703.629 kb on + strand, within MPMX19_00681at 703.629 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.791 kb on + strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.792 kb on - strand, within MPMX19_00681at 703.809 kb on + strand, within MPMX19_00681at 703.809 kb on + strand, within MPMX19_00681at 703.809 kb on + strand, within MPMX19_00681at 703.809 kb on + strand, within MPMX19_00681at 703.809 kb on + strand, within MPMX19_00681at 703.810 kb on - strand, within MPMX19_00681at 703.810 kb on - strand, within MPMX19_00681at 703.810 kb on - strand, within MPMX19_00681at 703.810 kb on - strand, within MPMX19_00681at 703.810 kb on - strand, within MPMX19_00681at 703.812 kb on + strand, within MPMX19_00681at 703.812 kb on + strand, within MPMX19_00681at 703.812 kb on + strand, within MPMX19_00681at 703.812 kb on + strand, within MPMX19_00681at 703.812 kb on + strand, within MPMX19_00681at 703.812 kb on + strand, within MPMX19_00681at 703.812 kb on + strand, within MPMX19_00681at 703.812 kb on + strand, within MPMX19_00681at 703.812 kb on + strand, within MPMX19_00681at 703.812 kb on + strand, within MPMX19_00681at 703.812 kb on + strand, within MPMX19_00681at 703.812 kb on + strand, within MPMX19_00681at 703.812 kb on + strand, within MPMX19_00681at 703.813 kb on - strand, within MPMX19_00681at 703.813 kb on - strand, within MPMX19_00681at 703.813 kb on - strand, within MPMX19_00681at 703.813 kb on - strand, within MPMX19_00681at 703.813 kb on - strand, within MPMX19_00681at 703.813 kb on - strand, within MPMX19_00681at 703.813 kb on - strand, within MPMX19_00681at 703.813 kb on - strand, within MPMX19_00681at 703.813 kb on - strand, within MPMX19_00681at 703.813 kb on - strand, within MPMX19_00681at 703.950 kb on + strand, within MPMX19_00681at 703.950 kb on + strand, within MPMX19_00681at 703.950 kb on + strand, within MPMX19_00681at 703.950 kb on + strand, within MPMX19_00681at 703.950 kb on + strand, within MPMX19_00681at 703.950 kb on + strand, within MPMX19_00681at 703.950 kb on + strand, within MPMX19_00681at 703.951 kb on - strand, within MPMX19_00681at 703.951 kb on - strand, within MPMX19_00681at 703.951 kb on - strand, within MPMX19_00681at 703.951 kb on - strand, within MPMX19_00681at 703.951 kb on - strand, within MPMX19_00681at 703.951 kb on - strand, within MPMX19_00681at 703.951 kb on - strand, within MPMX19_00681at 704.085 kb on + strand, within MPMX19_00681at 704.085 kb on + strand, within MPMX19_00681at 704.251 kb on - strand, within MPMX19_00681at 704.251 kb on - strand, within MPMX19_00681at 704.251 kb on - strand, within MPMX19_00681at 704.298 kb on + strand, within MPMX19_00681at 704.298 kb on + strand, within MPMX19_00681at 704.299 kb on - strand, within MPMX19_00681at 704.322 kb on + strand, within MPMX19_00681at 704.322 kb on + strand, within MPMX19_00681at 704.322 kb on + strand, within MPMX19_00681at 704.322 kb on + strand, within MPMX19_00681at 704.323 kb on - strand, within MPMX19_00681at 704.323 kb on - strand, within MPMX19_00681at 704.323 kb on - strand, within MPMX19_00681at 704.323 kb on - strand, within MPMX19_00681at 704.323 kb on - strand, within MPMX19_00681at 704.323 kb on - strand, within MPMX19_00681at 704.323 kb on - strand, within MPMX19_00681at 704.323 kb on - strand, within MPMX19_00681at 704.353 kb on - strand, within MPMX19_00681at 704.353 kb on - strand, within MPMX19_00681

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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701,364 - +0.4
701,364 - -3.1
701,364 - -0.9
701,364 - -0.6
701,364 - +0.7
701,364 - -0.2
701,364 - -0.8
701,364 - +0.1
702,012 - -0.1
702,012 - +1.2
702,012 - -0.1
702,127 + -1.2
702,127 + +2.0
702,128 - +0.1
702,128 - +0.4
702,128 - -0.9
702,249 + -0.2
702,249 + +0.1
702,249 + -0.6
702,249 + -0.9
702,249 + +0.4
702,249 + -1.0
702,250 - -1.8
702,291 + -2.3
702,291 + +0.2
702,292 - -0.6
702,898 - MPMX19_00680 0.51 -0.6
702,924 + MPMX19_00680 0.53 +0.1
702,924 + MPMX19_00680 0.53 +0.1
702,924 + MPMX19_00680 0.53 -1.1
702,924 + MPMX19_00680 0.53 -1.6
702,925 - MPMX19_00680 0.53 -1.6
703,162 - MPMX19_00680 0.75 -1.1
703,162 - MPMX19_00680 0.75 +0.7
703,263 + MPMX19_00680 0.85 +0.4
703,263 + MPMX19_00680 0.85 +1.1
703,264 - MPMX19_00680 0.85 -0.2
703,422 + -0.2
703,422 + +0.9
703,422 + -0.2
703,422 + +0.3
703,422 + -0.9
703,422 + +0.7
703,422 + -1.8
703,422 + -0.8
703,422 + -1.0
703,422 + +0.5
703,422 + +0.3
703,423 - -1.1
703,423 - +0.5
703,423 - -0.3
703,423 - -1.5
703,423 - -1.6
703,423 - -0.4
703,423 - +1.4
703,423 - -1.3
703,423 - +0.7
703,423 - -0.1
703,423 - -0.2
703,491 + +0.5
703,491 + -0.2
703,491 + +0.2
703,491 + -0.5
703,491 + -0.9
703,491 + -0.3
703,491 + -0.5
703,491 + +0.3
703,492 - -0.6
703,492 - -0.6
703,492 - +0.4
703,492 - +0.4
703,492 - -0.8
703,492 - -0.2
703,539 + -0.9
703,539 + -1.3
703,539 + -0.2
703,539 + -0.3
703,539 + -0.6
703,539 + -0.6
703,539 + -0.4
703,539 + -0.6
703,539 + +0.1
703,539 + -2.6
703,539 + -0.2
703,539 + -1.8
703,540 - -0.6
703,540 - -2.2
703,540 - -0.7
703,540 - -1.1
703,540 - +1.3
703,540 - -0.7
703,540 - +0.0
703,540 - -1.3
703,540 - -0.9
703,540 - -0.1
703,540 - -0.8
703,629 + MPMX19_00681 0.10 +0.4
703,629 + MPMX19_00681 0.10 +0.4
703,791 + MPMX19_00681 0.23 -2.9
703,791 + MPMX19_00681 0.23 -0.2
703,791 + MPMX19_00681 0.23 -1.1
703,791 + MPMX19_00681 0.23 -0.9
703,791 + MPMX19_00681 0.23 -0.2
703,791 + MPMX19_00681 0.23 +1.1
703,791 + MPMX19_00681 0.23 -0.0
703,791 + MPMX19_00681 0.23 +0.1
703,791 + MPMX19_00681 0.23 -2.2
703,791 + MPMX19_00681 0.23 +0.7
703,791 + MPMX19_00681 0.23 -1.8
703,791 + MPMX19_00681 0.23 -0.7
703,791 + MPMX19_00681 0.23 -0.5
703,791 + MPMX19_00681 0.23 +1.1
703,791 + MPMX19_00681 0.23 -0.9
703,791 + MPMX19_00681 0.23 -1.4
703,791 + MPMX19_00681 0.23 -1.0
703,791 + MPMX19_00681 0.23 -2.6
703,791 + MPMX19_00681 0.23 -1.6
703,791 + MPMX19_00681 0.23 -1.6
703,791 + MPMX19_00681 0.23 -0.8
703,791 + MPMX19_00681 0.23 -0.7
703,791 + MPMX19_00681 0.23 +0.7
703,791 + MPMX19_00681 0.23 -1.8
703,792 - MPMX19_00681 0.23 -4.0
703,792 - MPMX19_00681 0.23 -0.5
703,792 - MPMX19_00681 0.23 -1.0
703,792 - MPMX19_00681 0.23 -0.7
703,792 - MPMX19_00681 0.23 -1.0
703,792 - MPMX19_00681 0.23 -1.5
703,792 - MPMX19_00681 0.23 -0.4
703,792 - MPMX19_00681 0.23 -1.8
703,792 - MPMX19_00681 0.23 -1.0
703,792 - MPMX19_00681 0.23 -1.9
703,792 - MPMX19_00681 0.23 -1.1
703,792 - MPMX19_00681 0.23 -0.2
703,792 - MPMX19_00681 0.23 +0.1
703,792 - MPMX19_00681 0.23 -1.1
703,792 - MPMX19_00681 0.23 -1.0
703,792 - MPMX19_00681 0.23 -0.1
703,792 - MPMX19_00681 0.23 -1.3
703,792 - MPMX19_00681 0.23 -1.0
703,792 - MPMX19_00681 0.23 -0.9
703,792 - MPMX19_00681 0.23 +0.0
703,792 - MPMX19_00681 0.23 -1.9
703,792 - MPMX19_00681 0.23 -0.9
703,792 - MPMX19_00681 0.23 -1.2
703,792 - MPMX19_00681 0.23 -0.5
703,792 - MPMX19_00681 0.23 -1.6
703,792 - MPMX19_00681 0.23 -0.2
703,792 - MPMX19_00681 0.23 -1.0
703,792 - MPMX19_00681 0.23 -1.5
703,792 - MPMX19_00681 0.23 -0.8
703,792 - MPMX19_00681 0.23 -1.8
703,792 - MPMX19_00681 0.23 -1.4
703,809 + MPMX19_00681 0.24 -0.8
703,809 + MPMX19_00681 0.24 +0.3
703,809 + MPMX19_00681 0.24 +0.1
703,809 + MPMX19_00681 0.24 -1.0
703,809 + MPMX19_00681 0.24 +0.9
703,810 - MPMX19_00681 0.24 +0.3
703,810 - MPMX19_00681 0.24 +0.7
703,810 - MPMX19_00681 0.24 +0.8
703,810 - MPMX19_00681 0.24 +0.3
703,810 - MPMX19_00681 0.24 -0.1
703,812 + MPMX19_00681 0.24 -0.6
703,812 + MPMX19_00681 0.24 -0.3
703,812 + MPMX19_00681 0.24 +1.1
703,812 + MPMX19_00681 0.24 -1.5
703,812 + MPMX19_00681 0.24 -0.5
703,812 + MPMX19_00681 0.24 +0.1
703,812 + MPMX19_00681 0.24 -0.4
703,812 + MPMX19_00681 0.24 -0.4
703,812 + MPMX19_00681 0.24 +0.2
703,812 + MPMX19_00681 0.24 -2.1
703,812 + MPMX19_00681 0.24 +1.0
703,812 + MPMX19_00681 0.24 -0.2
703,812 + MPMX19_00681 0.24 -1.3
703,813 - MPMX19_00681 0.24 -2.0
703,813 - MPMX19_00681 0.24 -0.6
703,813 - MPMX19_00681 0.24 +0.0
703,813 - MPMX19_00681 0.24 -0.1
703,813 - MPMX19_00681 0.24 -0.6
703,813 - MPMX19_00681 0.24 -1.9
703,813 - MPMX19_00681 0.24 +0.8
703,813 - MPMX19_00681 0.24 +1.4
703,813 - MPMX19_00681 0.24 +1.1
703,813 - MPMX19_00681 0.24 -0.1
703,950 + MPMX19_00681 0.35 -1.2
703,950 + MPMX19_00681 0.35 -0.3
703,950 + MPMX19_00681 0.35 -0.8
703,950 + MPMX19_00681 0.35 +0.2
703,950 + MPMX19_00681 0.35 -0.2
703,950 + MPMX19_00681 0.35 -0.3
703,950 + MPMX19_00681 0.35 -0.7
703,951 - MPMX19_00681 0.35 -0.4
703,951 - MPMX19_00681 0.35 +0.5
703,951 - MPMX19_00681 0.35 -0.2
703,951 - MPMX19_00681 0.35 +0.0
703,951 - MPMX19_00681 0.35 -0.9
703,951 - MPMX19_00681 0.35 -0.2
703,951 - MPMX19_00681 0.35 -1.3
704,085 + MPMX19_00681 0.45 -1.4
704,085 + MPMX19_00681 0.45 +0.2
704,251 - MPMX19_00681 0.57 -0.3
704,251 - MPMX19_00681 0.57 +0.2
704,251 - MPMX19_00681 0.57 -1.2
704,298 + MPMX19_00681 0.61 -0.3
704,298 + MPMX19_00681 0.61 -1.3
704,299 - MPMX19_00681 0.61 +0.3
704,322 + MPMX19_00681 0.63 -0.6
704,322 + MPMX19_00681 0.63 +0.6
704,322 + MPMX19_00681 0.63 -0.3
704,322 + MPMX19_00681 0.63 -0.2
704,323 - MPMX19_00681 0.63 -2.1
704,323 - MPMX19_00681 0.63 -1.8
704,323 - MPMX19_00681 0.63 -0.4
704,323 - MPMX19_00681 0.63 -0.6
704,323 - MPMX19_00681 0.63 -0.7
704,323 - MPMX19_00681 0.63 -1.3
704,323 - MPMX19_00681 0.63 +0.1
704,323 - MPMX19_00681 0.63 -0.5
704,353 - MPMX19_00681 0.65 -1.0
704,353 - MPMX19_00681 0.65 -0.6

Or see this region's nucleotide sequence