Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00611 and MPMX19_00612 are separated by 219 nucleotides MPMX19_00612 and MPMX19_00613 are separated by 31 nucleotides
MPMX19_00611: MPMX19_00611 - (3S)-malyl-CoA thioesterase, at 624,968 to 625,837
_00611
MPMX19_00612: MPMX19_00612 - Pyridoxal kinase PdxY, at 626,057 to 626,917
_00612
MPMX19_00613: MPMX19_00613 - Sensor histidine kinase RcsC, at 626,949 to 629,123
_00613
Position (kb) 626
627 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.599 kb on + strand, within MPMX19_00611 at 625.599 kb on + strand, within MPMX19_00611 at 625.599 kb on + strand, within MPMX19_00611 at 625.599 kb on + strand, within MPMX19_00611 at 625.600 kb on - strand, within MPMX19_00611 at 625.600 kb on - strand, within MPMX19_00611 at 625.600 kb on - strand, within MPMX19_00611 at 625.654 kb on - strand, within MPMX19_00611 at 625.654 kb on - strand, within MPMX19_00611 at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.879 kb on + strand at 626.023 kb on + strand at 626.023 kb on + strand at 626.024 kb on - strand at 626.024 kb on - strand at 626.044 kb on + strand at 626.044 kb on + strand at 626.045 kb on - strand at 626.045 kb on - strand at 626.045 kb on - strand at 626.045 kb on - strand at 626.045 kb on - strand at 626.093 kb on + strand at 626.093 kb on + strand at 626.093 kb on + strand at 626.093 kb on + strand at 626.093 kb on + strand at 626.094 kb on - strand at 626.094 kb on - strand at 626.094 kb on - strand at 626.094 kb on - strand at 626.094 kb on - strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.193 kb on - strand, within MPMX19_00612 at 626.230 kb on + strand, within MPMX19_00612 at 626.230 kb on + strand, within MPMX19_00612 at 626.230 kb on + strand, within MPMX19_00612 at 626.230 kb on + strand, within MPMX19_00612 at 626.230 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.302 kb on + strand, within MPMX19_00612 at 626.302 kb on + strand, within MPMX19_00612 at 626.302 kb on + strand, within MPMX19_00612 at 626.302 kb on + strand, within MPMX19_00612 at 626.302 kb on + strand, within MPMX19_00612 at 626.302 kb on + strand, within MPMX19_00612 at 626.302 kb on + strand, within MPMX19_00612 at 626.303 kb on - strand, within MPMX19_00612 at 626.303 kb on - strand, within MPMX19_00612 at 626.303 kb on - strand, within MPMX19_00612 at 626.303 kb on - strand, within MPMX19_00612 at 626.303 kb on - strand, within MPMX19_00612 at 626.378 kb on + strand, within MPMX19_00612 at 626.378 kb on + strand, within MPMX19_00612 at 626.378 kb on + strand, within MPMX19_00612 at 626.378 kb on + strand, within MPMX19_00612 at 626.378 kb on + strand, within MPMX19_00612 at 626.378 kb on + strand, within MPMX19_00612 at 626.378 kb on + strand, within MPMX19_00612 at 626.378 kb on + strand, within MPMX19_00612 at 626.378 kb on + strand, within MPMX19_00612 at 626.379 kb on - strand, within MPMX19_00612 at 626.379 kb on - strand, within MPMX19_00612 at 626.379 kb on - strand, within MPMX19_00612 at 626.379 kb on - strand, within MPMX19_00612 at 626.379 kb on - strand, within MPMX19_00612 at 626.379 kb on - strand, within MPMX19_00612 at 626.379 kb on - strand, within MPMX19_00612 at 626.379 kb on - strand, within MPMX19_00612 at 626.507 kb on + strand, within MPMX19_00612 at 626.507 kb on + strand, within MPMX19_00612 at 626.507 kb on + strand, within MPMX19_00612 at 626.507 kb on + strand, within MPMX19_00612 at 626.507 kb on + strand, within MPMX19_00612 at 626.507 kb on + strand, within MPMX19_00612 at 626.507 kb on + strand, within MPMX19_00612 at 626.507 kb on + strand, within MPMX19_00612 at 626.508 kb on - strand, within MPMX19_00612 at 626.508 kb on - strand, within MPMX19_00612 at 626.520 kb on + strand, within MPMX19_00612 at 626.750 kb on + strand, within MPMX19_00612 at 626.750 kb on + strand, within MPMX19_00612 at 626.750 kb on + strand, within MPMX19_00612 at 626.750 kb on + strand, within MPMX19_00612 at 626.750 kb on + strand, within MPMX19_00612 at 626.750 kb on + strand, within MPMX19_00612 at 626.750 kb on + strand, within MPMX19_00612 at 626.750 kb on + strand, within MPMX19_00612 at 626.750 kb on + strand, within MPMX19_00612 at 626.751 kb on - strand, within MPMX19_00612 at 626.751 kb on - strand, within MPMX19_00612 at 626.751 kb on - strand, within MPMX19_00612 at 626.751 kb on - strand, within MPMX19_00612 at 626.751 kb on - strand, within MPMX19_00612 at 626.751 kb on - strand, within MPMX19_00612 at 626.832 kb on + strand at 626.833 kb on - strand at 627.128 kb on - strand at 627.258 kb on + strand, within MPMX19_00613 at 627.258 kb on + strand, within MPMX19_00613 at 627.259 kb on - strand, within MPMX19_00613 at 627.259 kb on - strand, within MPMX19_00613 at 627.259 kb on - strand, within MPMX19_00613 at 627.259 kb on - strand, within MPMX19_00613 at 627.259 kb on - strand, within MPMX19_00613 at 627.421 kb on - strand, within MPMX19_00613 at 627.421 kb on - strand, within MPMX19_00613
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 625,284 + MPMX19_00611 0.36 -1.3 625,284 + MPMX19_00611 0.36 +0.7 625,284 + MPMX19_00611 0.36 -1.9 625,284 + MPMX19_00611 0.36 +0.1 625,284 + MPMX19_00611 0.36 +0.7 625,284 + MPMX19_00611 0.36 +0.1 625,284 + MPMX19_00611 0.36 +0.4 625,285 - MPMX19_00611 0.36 -0.9 625,285 - MPMX19_00611 0.36 -0.6 625,285 - MPMX19_00611 0.36 -0.6 625,285 - MPMX19_00611 0.36 +0.8 625,285 - MPMX19_00611 0.36 +0.1 625,599 + MPMX19_00611 0.73 +0.5 625,599 + MPMX19_00611 0.73 -0.5 625,599 + MPMX19_00611 0.73 -1.4 625,599 + MPMX19_00611 0.73 -0.4 625,600 - MPMX19_00611 0.73 -0.9 625,600 - MPMX19_00611 0.73 -0.3 625,600 - MPMX19_00611 0.73 +0.1 625,654 - MPMX19_00611 0.79 +0.1 625,654 - MPMX19_00611 0.79 -0.1 625,800 + +2.9 625,800 + -0.7 625,800 + +0.4 625,800 + +0.9 625,800 + -1.3 625,800 + -1.1 625,800 + +0.1 625,800 + -0.1 625,800 + +0.2 625,800 + +0.9 625,800 + -0.5 625,800 + -1.6 625,800 + -1.6 625,800 + -1.7 625,800 + +0.0 625,800 + -1.5 625,800 + -1.6 625,800 + -2.0 625,800 + +0.9 625,800 + -0.8 625,800 + -0.6 625,800 + -0.8 625,800 + -0.7 625,801 - -0.9 625,801 - -0.4 625,801 - -0.7 625,801 - +0.5 625,801 - -1.3 625,801 - -1.1 625,801 - -1.0 625,801 - +0.1 625,801 - +0.1 625,801 - -0.4 625,801 - +0.5 625,801 - +0.1 625,801 - +0.1 625,801 - +0.5 625,801 - -0.6 625,801 - -0.9 625,801 - -0.6 625,801 - -0.0 625,801 - +0.2 625,801 - -1.5 625,801 - -2.0 625,801 - +0.4 625,801 - +1.4 625,801 - -2.0 625,801 - -2.0 625,801 - -0.9 625,801 - -1.3 625,879 + -0.7 626,023 + -0.2 626,023 + -0.9 626,024 - -1.3 626,024 - +0.4 626,044 + -0.4 626,044 + -0.0 626,045 - -0.2 626,045 - -1.8 626,045 - +0.9 626,045 - -0.1 626,045 - +0.0 626,093 + -1.5 626,093 + +0.7 626,093 + -1.8 626,093 + -1.8 626,093 + -0.7 626,094 - +0.5 626,094 - +0.7 626,094 - +1.7 626,094 - -0.9 626,094 - -0.0 626,099 + -0.8 626,099 + +1.7 626,099 + -1.4 626,099 + +1.4 626,099 + +0.2 626,099 + -1.4 626,099 + +1.5 626,099 + -1.3 626,099 + -0.5 626,099 + +0.1 626,099 + -2.0 626,099 + -0.5 626,099 + +0.5 626,099 + -1.5 626,099 + -0.6 626,099 + +0.0 626,099 + -0.6 626,099 + +0.5 626,100 - -0.8 626,100 - -1.2 626,100 - -0.5 626,100 - +0.7 626,100 - -0.2 626,100 - -0.3 626,100 - +0.7 626,100 - -0.9 626,100 - -0.2 626,100 - -0.7 626,100 - -0.7 626,193 - MPMX19_00612 0.16 -0.7 626,230 + MPMX19_00612 0.20 +0.3 626,230 + MPMX19_00612 0.20 -0.1 626,230 + MPMX19_00612 0.20 -1.5 626,230 + MPMX19_00612 0.20 +0.0 626,230 + MPMX19_00612 0.20 -0.1 626,300 + MPMX19_00612 0.28 -1.8 626,300 + MPMX19_00612 0.28 -0.6 626,300 + MPMX19_00612 0.28 +0.1 626,300 + MPMX19_00612 0.28 -1.5 626,300 + MPMX19_00612 0.28 -0.4 626,300 + MPMX19_00612 0.28 -1.2 626,300 + MPMX19_00612 0.28 -0.7 626,300 + MPMX19_00612 0.28 +1.4 626,300 + MPMX19_00612 0.28 +0.2 626,300 + MPMX19_00612 0.28 -1.6 626,301 - MPMX19_00612 0.28 -0.4 626,301 - MPMX19_00612 0.28 -0.6 626,301 - MPMX19_00612 0.28 +0.1 626,301 - MPMX19_00612 0.28 +0.5 626,301 - MPMX19_00612 0.28 -0.0 626,301 - MPMX19_00612 0.28 -0.1 626,301 - MPMX19_00612 0.28 -0.6 626,301 - MPMX19_00612 0.28 -0.5 626,301 - MPMX19_00612 0.28 -0.2 626,301 - MPMX19_00612 0.28 -0.0 626,301 - MPMX19_00612 0.28 -1.3 626,301 - MPMX19_00612 0.28 +0.1 626,302 + MPMX19_00612 0.28 -0.3 626,302 + MPMX19_00612 0.28 +1.4 626,302 + MPMX19_00612 0.28 +0.2 626,302 + MPMX19_00612 0.28 +0.4 626,302 + MPMX19_00612 0.28 -1.3 626,302 + MPMX19_00612 0.28 -0.8 626,302 + MPMX19_00612 0.28 -0.1 626,303 - MPMX19_00612 0.29 -0.4 626,303 - MPMX19_00612 0.29 -0.3 626,303 - MPMX19_00612 0.29 -1.6 626,303 - MPMX19_00612 0.29 -1.3 626,303 - MPMX19_00612 0.29 +2.3 626,378 + MPMX19_00612 0.37 -0.2 626,378 + MPMX19_00612 0.37 +1.1 626,378 + MPMX19_00612 0.37 -0.1 626,378 + MPMX19_00612 0.37 -0.2 626,378 + MPMX19_00612 0.37 -0.4 626,378 + MPMX19_00612 0.37 -0.5 626,378 + MPMX19_00612 0.37 -1.2 626,378 + MPMX19_00612 0.37 -0.8 626,378 + MPMX19_00612 0.37 -1.1 626,379 - MPMX19_00612 0.37 +0.3 626,379 - MPMX19_00612 0.37 +0.4 626,379 - MPMX19_00612 0.37 -0.1 626,379 - MPMX19_00612 0.37 -1.8 626,379 - MPMX19_00612 0.37 +0.3 626,379 - MPMX19_00612 0.37 +0.7 626,379 - MPMX19_00612 0.37 -2.0 626,379 - MPMX19_00612 0.37 -0.5 626,507 + MPMX19_00612 0.52 +0.1 626,507 + MPMX19_00612 0.52 +0.7 626,507 + MPMX19_00612 0.52 +0.3 626,507 + MPMX19_00612 0.52 -1.0 626,507 + MPMX19_00612 0.52 +0.5 626,507 + MPMX19_00612 0.52 -0.3 626,507 + MPMX19_00612 0.52 -1.1 626,507 + MPMX19_00612 0.52 -0.2 626,508 - MPMX19_00612 0.52 +0.7 626,508 - MPMX19_00612 0.52 +0.2 626,520 + MPMX19_00612 0.54 -0.0 626,750 + MPMX19_00612 0.80 -0.3 626,750 + MPMX19_00612 0.80 -1.4 626,750 + MPMX19_00612 0.80 -0.9 626,750 + MPMX19_00612 0.80 -0.5 626,750 + MPMX19_00612 0.80 +0.4 626,750 + MPMX19_00612 0.80 -0.0 626,750 + MPMX19_00612 0.80 +0.7 626,750 + MPMX19_00612 0.80 -1.1 626,750 + MPMX19_00612 0.80 -0.0 626,751 - MPMX19_00612 0.81 -0.7 626,751 - MPMX19_00612 0.81 -0.6 626,751 - MPMX19_00612 0.81 +1.1 626,751 - MPMX19_00612 0.81 +0.2 626,751 - MPMX19_00612 0.81 -0.9 626,751 - MPMX19_00612 0.81 -1.5 626,832 + -0.7 626,833 - +0.9 627,128 - +1.3 627,258 + MPMX19_00613 0.14 -0.0 627,258 + MPMX19_00613 0.14 -0.8 627,259 - MPMX19_00613 0.14 +1.3 627,259 - MPMX19_00613 0.14 -0.3 627,259 - MPMX19_00613 0.14 +0.1 627,259 - MPMX19_00613 0.14 +0.7 627,259 - MPMX19_00613 0.14 +0.3 627,421 - MPMX19_00613 0.22 +1.3 627,421 - MPMX19_00613 0.22 -0.1
Or see this region's nucleotide sequence