Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00574

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00572 and MPMX19_00573 are separated by 20 nucleotidesMPMX19_00573 and MPMX19_00574 are separated by 142 nucleotidesMPMX19_00574 and MPMX19_00575 are separated by 216 nucleotides MPMX19_00572: MPMX19_00572 - Type-4 uracil-DNA glycosylase, at 587,167 to 587,772 _00572 MPMX19_00573: MPMX19_00573 - hypothetical protein, at 587,793 to 588,452 _00573 MPMX19_00574: MPMX19_00574 - hypothetical protein, at 588,595 to 589,440 _00574 MPMX19_00575: MPMX19_00575 - 4-hydroxybenzoate octaprenyltransferase, at 589,657 to 590,604 _00575 Position (kb) 588 589 590Strain fitness (log2 ratio) -2 -1 0 1 2at 587.692 kb on + strand, within MPMX19_00572at 587.692 kb on + strand, within MPMX19_00572at 587.692 kb on + strand, within MPMX19_00572at 587.692 kb on + strand, within MPMX19_00572at 587.692 kb on + strand, within MPMX19_00572at 587.692 kb on + strand, within MPMX19_00572at 587.692 kb on + strand, within MPMX19_00572at 587.692 kb on + strand, within MPMX19_00572at 587.692 kb on + strand, within MPMX19_00572at 587.692 kb on + strand, within MPMX19_00572at 587.692 kb on + strand, within MPMX19_00572at 587.693 kb on - strand, within MPMX19_00572at 587.693 kb on - strand, within MPMX19_00572at 587.693 kb on - strand, within MPMX19_00572at 587.693 kb on - strand, within MPMX19_00572at 587.693 kb on - strand, within MPMX19_00572at 587.693 kb on - strand, within MPMX19_00572at 587.693 kb on - strand, within MPMX19_00572at 587.693 kb on - strand, within MPMX19_00572at 587.872 kb on + strand, within MPMX19_00573at 587.872 kb on + strand, within MPMX19_00573at 587.872 kb on + strand, within MPMX19_00573at 587.872 kb on + strand, within MPMX19_00573at 587.872 kb on + strand, within MPMX19_00573at 587.872 kb on + strand, within MPMX19_00573at 587.872 kb on + strand, within MPMX19_00573at 587.873 kb on - strand, within MPMX19_00573at 587.873 kb on - strand, within MPMX19_00573at 587.873 kb on - strand, within MPMX19_00573at 587.873 kb on - strand, within MPMX19_00573at 587.873 kb on - strand, within MPMX19_00573at 587.873 kb on - strand, within MPMX19_00573at 587.873 kb on - strand, within MPMX19_00573at 587.873 kb on - strand, within MPMX19_00573at 587.908 kb on + strand, within MPMX19_00573at 587.908 kb on + strand, within MPMX19_00573at 587.908 kb on + strand, within MPMX19_00573at 587.908 kb on + strand, within MPMX19_00573at 587.908 kb on + strand, within MPMX19_00573at 587.908 kb on + strand, within MPMX19_00573at 587.908 kb on + strand, within MPMX19_00573at 587.908 kb on + strand, within MPMX19_00573at 587.909 kb on - strand, within MPMX19_00573at 587.909 kb on - strand, within MPMX19_00573at 587.909 kb on - strand, within MPMX19_00573at 587.909 kb on - strand, within MPMX19_00573at 588.001 kb on + strand, within MPMX19_00573at 588.001 kb on + strand, within MPMX19_00573at 588.001 kb on + strand, within MPMX19_00573at 588.002 kb on - strand, within MPMX19_00573at 588.295 kb on + strand, within MPMX19_00573at 588.296 kb on - strand, within MPMX19_00573at 588.296 kb on - strand, within MPMX19_00573at 588.296 kb on - strand, within MPMX19_00573at 588.296 kb on - strand, within MPMX19_00573at 588.296 kb on - strand, within MPMX19_00573at 588.296 kb on - strand, within MPMX19_00573at 588.375 kb on + strand, within MPMX19_00573at 588.417 kb on - strandat 588.452 kb on + strandat 588.452 kb on + strandat 588.452 kb on + strandat 588.452 kb on + strandat 588.452 kb on + strandat 588.452 kb on + strandat 588.453 kb on - strandat 588.453 kb on - strandat 588.453 kb on - strandat 588.503 kb on + strandat 588.503 kb on + strandat 588.503 kb on + strandat 588.504 kb on - strandat 588.504 kb on - strandat 588.512 kb on + strandat 588.512 kb on + strandat 588.512 kb on + strandat 588.512 kb on + strandat 588.513 kb on - strandat 588.513 kb on - strandat 588.513 kb on - strandat 588.516 kb on + strandat 588.516 kb on + strandat 588.516 kb on + strandat 588.517 kb on - strandat 588.517 kb on - strandat 588.517 kb on - strandat 588.517 kb on - strandat 588.517 kb on - strandat 588.517 kb on - strandat 588.530 kb on + strandat 588.530 kb on + strandat 588.531 kb on - strandat 588.531 kb on - strandat 588.531 kb on - strandat 588.531 kb on - strandat 588.657 kb on + strandat 588.728 kb on + strand, within MPMX19_00574at 588.728 kb on + strand, within MPMX19_00574at 588.728 kb on + strand, within MPMX19_00574at 588.772 kb on + strand, within MPMX19_00574at 588.772 kb on + strand, within MPMX19_00574at 588.772 kb on + strand, within MPMX19_00574at 588.772 kb on + strand, within MPMX19_00574at 588.772 kb on + strand, within MPMX19_00574at 588.773 kb on - strand, within MPMX19_00574at 588.773 kb on - strand, within MPMX19_00574at 588.773 kb on - strand, within MPMX19_00574at 588.773 kb on - strand, within MPMX19_00574at 588.773 kb on - strand, within MPMX19_00574at 589.018 kb on + strand, within MPMX19_00574at 589.018 kb on + strand, within MPMX19_00574at 589.018 kb on + strand, within MPMX19_00574at 589.028 kb on - strand, within MPMX19_00574at 589.447 kb on + strandat 589.447 kb on + strandat 589.447 kb on + strandat 589.447 kb on + strandat 589.447 kb on + strandat 589.447 kb on + strandat 589.447 kb on + strandat 589.557 kb on + strandat 589.557 kb on + strandat 589.557 kb on + strandat 589.558 kb on - strandat 589.558 kb on - strandat 589.558 kb on - strandat 589.558 kb on - strandat 589.558 kb on - strandat 589.558 kb on - strandat 589.558 kb on - strandat 589.618 kb on + strandat 589.659 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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587,692 + MPMX19_00572 0.87 +2.0
587,692 + MPMX19_00572 0.87 +1.7
587,692 + MPMX19_00572 0.87 -1.1
587,692 + MPMX19_00572 0.87 -0.6
587,692 + MPMX19_00572 0.87 +0.7
587,692 + MPMX19_00572 0.87 +0.0
587,692 + MPMX19_00572 0.87 +0.1
587,692 + MPMX19_00572 0.87 -0.9
587,692 + MPMX19_00572 0.87 -1.3
587,692 + MPMX19_00572 0.87 -0.5
587,692 + MPMX19_00572 0.87 -1.9
587,693 - MPMX19_00572 0.87 -0.3
587,693 - MPMX19_00572 0.87 -0.8
587,693 - MPMX19_00572 0.87 -2.4
587,693 - MPMX19_00572 0.87 -1.5
587,693 - MPMX19_00572 0.87 -1.1
587,693 - MPMX19_00572 0.87 +0.1
587,693 - MPMX19_00572 0.87 +0.1
587,693 - MPMX19_00572 0.87 +0.1
587,872 + MPMX19_00573 0.12 -0.8
587,872 + MPMX19_00573 0.12 -0.2
587,872 + MPMX19_00573 0.12 -0.2
587,872 + MPMX19_00573 0.12 +0.2
587,872 + MPMX19_00573 0.12 +0.2
587,872 + MPMX19_00573 0.12 -2.2
587,872 + MPMX19_00573 0.12 +0.6
587,873 - MPMX19_00573 0.12 +0.7
587,873 - MPMX19_00573 0.12 -1.0
587,873 - MPMX19_00573 0.12 +0.5
587,873 - MPMX19_00573 0.12 +0.0
587,873 - MPMX19_00573 0.12 -0.8
587,873 - MPMX19_00573 0.12 -2.0
587,873 - MPMX19_00573 0.12 -0.8
587,873 - MPMX19_00573 0.12 -0.4
587,908 + MPMX19_00573 0.17 -0.9
587,908 + MPMX19_00573 0.17 -0.3
587,908 + MPMX19_00573 0.17 -1.1
587,908 + MPMX19_00573 0.17 -1.0
587,908 + MPMX19_00573 0.17 -0.7
587,908 + MPMX19_00573 0.17 -1.8
587,908 + MPMX19_00573 0.17 -0.7
587,908 + MPMX19_00573 0.17 -1.2
587,909 - MPMX19_00573 0.18 +0.7
587,909 - MPMX19_00573 0.18 -0.6
587,909 - MPMX19_00573 0.18 +0.2
587,909 - MPMX19_00573 0.18 +0.3
588,001 + MPMX19_00573 0.32 +0.2
588,001 + MPMX19_00573 0.32 -0.8
588,001 + MPMX19_00573 0.32 -1.4
588,002 - MPMX19_00573 0.32 -0.8
588,295 + MPMX19_00573 0.76 -0.6
588,296 - MPMX19_00573 0.76 -1.1
588,296 - MPMX19_00573 0.76 -0.6
588,296 - MPMX19_00573 0.76 -0.3
588,296 - MPMX19_00573 0.76 -1.1
588,296 - MPMX19_00573 0.76 +0.3
588,296 - MPMX19_00573 0.76 +0.4
588,375 + MPMX19_00573 0.88 -0.7
588,417 - +0.6
588,452 + -0.2
588,452 + -0.1
588,452 + -1.4
588,452 + +0.4
588,452 + -1.2
588,452 + +0.8
588,453 - -1.0
588,453 - +0.1
588,453 - +0.5
588,503 + -0.6
588,503 + -1.0
588,503 + +0.2
588,504 - +0.3
588,504 - -0.0
588,512 + -0.5
588,512 + +0.7
588,512 + -0.7
588,512 + -2.1
588,513 - -0.1
588,513 - -1.9
588,513 - +0.1
588,516 + +1.4
588,516 + +1.4
588,516 + -0.4
588,517 - +0.5
588,517 - -0.4
588,517 - -1.5
588,517 - -0.1
588,517 - -1.5
588,517 - +1.3
588,530 + -0.5
588,530 + +1.0
588,531 - -1.6
588,531 - -0.5
588,531 - +1.1
588,531 - -0.3
588,657 + -1.5
588,728 + MPMX19_00574 0.16 -1.0
588,728 + MPMX19_00574 0.16 -1.8
588,728 + MPMX19_00574 0.16 -2.0
588,772 + MPMX19_00574 0.21 -0.2
588,772 + MPMX19_00574 0.21 -2.2
588,772 + MPMX19_00574 0.21 -1.4
588,772 + MPMX19_00574 0.21 -0.1
588,772 + MPMX19_00574 0.21 +0.3
588,773 - MPMX19_00574 0.21 +0.1
588,773 - MPMX19_00574 0.21 +0.7
588,773 - MPMX19_00574 0.21 -1.6
588,773 - MPMX19_00574 0.21 -1.2
588,773 - MPMX19_00574 0.21 -1.5
589,018 + MPMX19_00574 0.50 -0.6
589,018 + MPMX19_00574 0.50 +0.7
589,018 + MPMX19_00574 0.50 +0.9
589,028 - MPMX19_00574 0.51 +1.4
589,447 + -0.1
589,447 + +0.5
589,447 + -0.1
589,447 + -1.8
589,447 + +0.9
589,447 + -0.3
589,447 + -0.2
589,557 + +0.4
589,557 + -1.0
589,557 + -2.2
589,558 - -0.5
589,558 - -1.2
589,558 - -0.0
589,558 - +0.1
589,558 - -1.2
589,558 - -1.1
589,558 - +1.0
589,618 + -0.8
589,659 - -0.7

Or see this region's nucleotide sequence