Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00493

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00492 and MPMX19_00493 are separated by 34 nucleotidesMPMX19_00493 and MPMX19_00494 are separated by 121 nucleotidesMPMX19_00494 and MPMX19_00495 are separated by 96 nucleotides MPMX19_00492: MPMX19_00492 - Cobalamin biosynthesis protein CbiB, at 492,604 to 493,587 _00492 MPMX19_00493: MPMX19_00493 - hypothetical protein, at 493,622 to 494,197 _00493 MPMX19_00494: MPMX19_00494 - hypothetical protein, at 494,319 to 494,462 _00494 MPMX19_00495: MPMX19_00495 - hypothetical protein, at 494,559 to 495,191 _00495 Position (kb) 493 494 495Strain fitness (log2 ratio) -2 -1 0 1 2at 493.076 kb on + strand, within MPMX19_00492at 493.077 kb on - strand, within MPMX19_00492at 493.077 kb on - strand, within MPMX19_00492at 493.166 kb on + strand, within MPMX19_00492at 493.166 kb on + strand, within MPMX19_00492at 493.166 kb on + strand, within MPMX19_00492at 493.166 kb on + strand, within MPMX19_00492at 493.166 kb on + strand, within MPMX19_00492at 493.166 kb on + strand, within MPMX19_00492at 493.166 kb on + strand, within MPMX19_00492at 493.167 kb on - strand, within MPMX19_00492at 493.167 kb on - strand, within MPMX19_00492at 493.167 kb on - strand, within MPMX19_00492at 493.167 kb on - strand, within MPMX19_00492at 493.167 kb on - strand, within MPMX19_00492at 493.167 kb on - strand, within MPMX19_00492at 493.655 kb on + strandat 493.656 kb on - strandat 493.656 kb on - strandat 493.656 kb on - strandat 493.656 kb on - strandat 493.656 kb on - strandat 493.656 kb on - strandat 493.656 kb on - strandat 493.656 kb on - strandat 494.233 kb on + strandat 494.233 kb on + strandat 494.236 kb on + strandat 494.236 kb on + strandat 494.236 kb on + strandat 494.236 kb on + strandat 494.236 kb on + strandat 494.237 kb on - strandat 494.838 kb on + strand, within MPMX19_00495at 494.838 kb on + strand, within MPMX19_00495at 494.838 kb on + strand, within MPMX19_00495at 494.838 kb on + strand, within MPMX19_00495at 494.838 kb on + strand, within MPMX19_00495at 494.839 kb on - strand, within MPMX19_00495at 494.839 kb on - strand, within MPMX19_00495at 494.839 kb on - strand, within MPMX19_00495at 494.839 kb on - strand, within MPMX19_00495at 494.839 kb on - strand, within MPMX19_00495at 494.839 kb on - strand, within MPMX19_00495at 494.839 kb on - strand, within MPMX19_00495at 494.839 kb on - strand, within MPMX19_00495at 494.839 kb on - strand, within MPMX19_00495at 494.895 kb on + strand, within MPMX19_00495at 494.895 kb on + strand, within MPMX19_00495at 494.895 kb on + strand, within MPMX19_00495at 494.895 kb on + strand, within MPMX19_00495at 494.895 kb on + strand, within MPMX19_00495at 494.895 kb on + strand, within MPMX19_00495at 494.895 kb on + strand, within MPMX19_00495at 494.895 kb on + strand, within MPMX19_00495at 494.896 kb on - strand, within MPMX19_00495at 494.896 kb on - strand, within MPMX19_00495at 494.896 kb on - strand, within MPMX19_00495at 494.896 kb on - strand, within MPMX19_00495at 494.896 kb on - strand, within MPMX19_00495at 494.896 kb on - strand, within MPMX19_00495

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
493,076 + MPMX19_00492 0.48 +1.4
493,077 - MPMX19_00492 0.48 +1.1
493,077 - MPMX19_00492 0.48 -1.2
493,166 + MPMX19_00492 0.57 +0.5
493,166 + MPMX19_00492 0.57 +0.2
493,166 + MPMX19_00492 0.57 -0.5
493,166 + MPMX19_00492 0.57 -0.1
493,166 + MPMX19_00492 0.57 -0.5
493,166 + MPMX19_00492 0.57 +0.3
493,166 + MPMX19_00492 0.57 -0.0
493,167 - MPMX19_00492 0.57 +0.1
493,167 - MPMX19_00492 0.57 +1.4
493,167 - MPMX19_00492 0.57 -0.4
493,167 - MPMX19_00492 0.57 +0.4
493,167 - MPMX19_00492 0.57 +0.1
493,167 - MPMX19_00492 0.57 +0.7
493,655 + -0.2
493,656 - +0.3
493,656 - -0.0
493,656 - +0.4
493,656 - +1.4
493,656 - +1.9
493,656 - -0.8
493,656 - +0.3
493,656 - +0.5
494,233 + +0.1
494,233 + +0.2
494,236 + -1.8
494,236 + -0.1
494,236 + -0.1
494,236 + -0.0
494,236 + +0.8
494,237 - -0.1
494,838 + MPMX19_00495 0.44 +0.1
494,838 + MPMX19_00495 0.44 -0.4
494,838 + MPMX19_00495 0.44 -0.9
494,838 + MPMX19_00495 0.44 -0.0
494,838 + MPMX19_00495 0.44 +0.8
494,839 - MPMX19_00495 0.44 +0.0
494,839 - MPMX19_00495 0.44 +0.5
494,839 - MPMX19_00495 0.44 -0.4
494,839 - MPMX19_00495 0.44 +0.3
494,839 - MPMX19_00495 0.44 -0.6
494,839 - MPMX19_00495 0.44 +0.2
494,839 - MPMX19_00495 0.44 +0.7
494,839 - MPMX19_00495 0.44 -1.0
494,839 - MPMX19_00495 0.44 -0.0
494,895 + MPMX19_00495 0.53 -1.2
494,895 + MPMX19_00495 0.53 +1.9
494,895 + MPMX19_00495 0.53 +0.4
494,895 + MPMX19_00495 0.53 +0.2
494,895 + MPMX19_00495 0.53 -0.6
494,895 + MPMX19_00495 0.53 +0.2
494,895 + MPMX19_00495 0.53 -0.4
494,895 + MPMX19_00495 0.53 -0.6
494,896 - MPMX19_00495 0.53 +1.2
494,896 - MPMX19_00495 0.53 -0.5
494,896 - MPMX19_00495 0.53 -0.1
494,896 - MPMX19_00495 0.53 +0.5
494,896 - MPMX19_00495 0.53 -0.8
494,896 - MPMX19_00495 0.53 -0.4

Or see this region's nucleotide sequence