Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00333

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00332 and MPMX19_00333 are separated by 82 nucleotidesMPMX19_00333 and MPMX19_00334 are separated by 32 nucleotidesMPMX19_00334 and MPMX19_00335 are separated by 39 nucleotides MPMX19_00332: MPMX19_00332 - Na(+)/H(+)-K(+) antiporter GerN, at 334,300 to 335,598 _00332 MPMX19_00333: MPMX19_00333 - Acetylglutamate kinase, at 335,681 to 336,580 _00333 MPMX19_00334: MPMX19_00334 - hypothetical protein, at 336,613 to 336,897 _00334 MPMX19_00335: MPMX19_00335 - Magnesium transport protein CorA, at 336,937 to 337,920 _00335 Position (kb) 335 336 337Strain fitness (log2 ratio) -2 -1 0 1 2at 334.834 kb on + strand, within MPMX19_00332at 334.834 kb on + strand, within MPMX19_00332at 334.834 kb on + strand, within MPMX19_00332at 334.835 kb on - strand, within MPMX19_00332at 334.963 kb on + strand, within MPMX19_00332at 334.963 kb on + strand, within MPMX19_00332at 334.963 kb on + strand, within MPMX19_00332at 334.963 kb on + strand, within MPMX19_00332at 334.963 kb on + strand, within MPMX19_00332at 334.963 kb on + strand, within MPMX19_00332at 334.963 kb on + strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.161 kb on + strand, within MPMX19_00332at 335.162 kb on - strand, within MPMX19_00332at 335.603 kb on + strandat 335.603 kb on + strandat 335.603 kb on + strandat 335.639 kb on + strandat 336.721 kb on + strand, within MPMX19_00334at 336.721 kb on + strand, within MPMX19_00334at 336.721 kb on + strand, within MPMX19_00334at 336.721 kb on + strand, within MPMX19_00334at 336.722 kb on - strand, within MPMX19_00334at 336.722 kb on - strand, within MPMX19_00334at 336.722 kb on - strand, within MPMX19_00334at 336.722 kb on - strand, within MPMX19_00334at 336.895 kb on + strandat 336.895 kb on + strandat 336.895 kb on + strandat 336.895 kb on + strandat 336.895 kb on + strandat 336.895 kb on + strandat 336.895 kb on + strandat 336.895 kb on + strandat 336.895 kb on + strandat 336.896 kb on - strandat 336.896 kb on - strandat 336.896 kb on - strandat 336.896 kb on - strandat 337.430 kb on - strand, within MPMX19_00335

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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334,834 + MPMX19_00332 0.41 -0.1
334,834 + MPMX19_00332 0.41 +0.1
334,834 + MPMX19_00332 0.41 +1.1
334,835 - MPMX19_00332 0.41 +1.7
334,963 + MPMX19_00332 0.51 +0.4
334,963 + MPMX19_00332 0.51 +0.1
334,963 + MPMX19_00332 0.51 -0.8
334,963 + MPMX19_00332 0.51 -0.1
334,963 + MPMX19_00332 0.51 -1.6
334,963 + MPMX19_00332 0.51 -0.2
334,963 + MPMX19_00332 0.51 +0.4
334,964 - MPMX19_00332 0.51 -0.4
334,964 - MPMX19_00332 0.51 +0.4
334,964 - MPMX19_00332 0.51 -0.1
334,964 - MPMX19_00332 0.51 +0.1
334,964 - MPMX19_00332 0.51 -1.3
334,964 - MPMX19_00332 0.51 -1.2
334,964 - MPMX19_00332 0.51 -0.3
334,964 - MPMX19_00332 0.51 -0.2
334,964 - MPMX19_00332 0.51 -0.5
334,964 - MPMX19_00332 0.51 -0.6
334,964 - MPMX19_00332 0.51 +0.1
334,964 - MPMX19_00332 0.51 +0.3
334,964 - MPMX19_00332 0.51 +1.3
335,116 + MPMX19_00332 0.63 +0.1
335,116 + MPMX19_00332 0.63 -0.6
335,116 + MPMX19_00332 0.63 -1.2
335,116 + MPMX19_00332 0.63 -0.3
335,116 + MPMX19_00332 0.63 -0.0
335,116 + MPMX19_00332 0.63 +1.5
335,116 + MPMX19_00332 0.63 -1.4
335,116 + MPMX19_00332 0.63 -0.5
335,116 + MPMX19_00332 0.63 +0.1
335,116 + MPMX19_00332 0.63 -0.3
335,116 + MPMX19_00332 0.63 -0.0
335,116 + MPMX19_00332 0.63 -0.1
335,116 + MPMX19_00332 0.63 +0.5
335,116 + MPMX19_00332 0.63 -0.7
335,116 + MPMX19_00332 0.63 -1.8
335,116 + MPMX19_00332 0.63 -0.7
335,116 + MPMX19_00332 0.63 +0.2
335,116 + MPMX19_00332 0.63 +0.1
335,116 + MPMX19_00332 0.63 -1.1
335,116 + MPMX19_00332 0.63 -0.3
335,116 + MPMX19_00332 0.63 +0.6
335,116 + MPMX19_00332 0.63 +0.0
335,116 + MPMX19_00332 0.63 +0.4
335,116 + MPMX19_00332 0.63 -1.6
335,116 + MPMX19_00332 0.63 -0.4
335,116 + MPMX19_00332 0.63 -0.1
335,117 - MPMX19_00332 0.63 +0.5
335,117 - MPMX19_00332 0.63 -0.9
335,117 - MPMX19_00332 0.63 -2.5
335,117 - MPMX19_00332 0.63 -1.6
335,117 - MPMX19_00332 0.63 -2.1
335,117 - MPMX19_00332 0.63 -1.1
335,117 - MPMX19_00332 0.63 -1.9
335,117 - MPMX19_00332 0.63 -0.6
335,117 - MPMX19_00332 0.63 +1.0
335,117 - MPMX19_00332 0.63 -1.0
335,117 - MPMX19_00332 0.63 -0.6
335,117 - MPMX19_00332 0.63 -0.8
335,117 - MPMX19_00332 0.63 +0.7
335,117 - MPMX19_00332 0.63 -1.1
335,117 - MPMX19_00332 0.63 +0.8
335,117 - MPMX19_00332 0.63 +0.1
335,117 - MPMX19_00332 0.63 -1.0
335,117 - MPMX19_00332 0.63 -0.3
335,117 - MPMX19_00332 0.63 -1.9
335,117 - MPMX19_00332 0.63 +1.0
335,117 - MPMX19_00332 0.63 +0.5
335,117 - MPMX19_00332 0.63 -2.3
335,117 - MPMX19_00332 0.63 -0.6
335,117 - MPMX19_00332 0.63 -0.8
335,117 - MPMX19_00332 0.63 -1.7
335,117 - MPMX19_00332 0.63 -1.4
335,161 + MPMX19_00332 0.66 -0.9
335,162 - MPMX19_00332 0.66 -0.2
335,603 + -1.1
335,603 + -1.8
335,603 + +0.4
335,639 + +0.1
336,721 + MPMX19_00334 0.38 +0.6
336,721 + MPMX19_00334 0.38 +1.3
336,721 + MPMX19_00334 0.38 +0.0
336,721 + MPMX19_00334 0.38 +1.9
336,722 - MPMX19_00334 0.38 -0.5
336,722 - MPMX19_00334 0.38 +0.3
336,722 - MPMX19_00334 0.38 -1.0
336,722 - MPMX19_00334 0.38 -1.0
336,895 + -1.3
336,895 + -1.0
336,895 + -0.4
336,895 + -0.6
336,895 + -0.8
336,895 + -1.5
336,895 + -0.0
336,895 + -0.3
336,895 + -0.2
336,896 - -1.5
336,896 - +1.0
336,896 - -1.1
336,896 - -0.2
337,430 - MPMX19_00335 0.50 +0.9

Or see this region's nucleotide sequence