Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00332

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00330 and MPMX19_00331 are separated by 105 nucleotidesMPMX19_00331 and MPMX19_00332 are separated by 12 nucleotidesMPMX19_00332 and MPMX19_00333 are separated by 82 nucleotides MPMX19_00330: MPMX19_00330 - Membrane protein insertase YidC, at 331,681 to 333,498 _00330 MPMX19_00331: MPMX19_00331 - GTP-binding protein EngB, at 333,604 to 334,287 _00331 MPMX19_00332: MPMX19_00332 - Na(+)/H(+)-K(+) antiporter GerN, at 334,300 to 335,598 _00332 MPMX19_00333: MPMX19_00333 - Acetylglutamate kinase, at 335,681 to 336,580 _00333 Position (kb) 334 335 336Strain fitness (log2 ratio) -2 -1 0 1at 333.568 kb on + strandat 333.568 kb on + strandat 333.568 kb on + strandat 334.285 kb on + strandat 334.285 kb on + strandat 334.286 kb on - strandat 334.834 kb on + strand, within MPMX19_00332at 334.834 kb on + strand, within MPMX19_00332at 334.834 kb on + strand, within MPMX19_00332at 334.835 kb on - strand, within MPMX19_00332at 334.963 kb on + strand, within MPMX19_00332at 334.963 kb on + strand, within MPMX19_00332at 334.963 kb on + strand, within MPMX19_00332at 334.963 kb on + strand, within MPMX19_00332at 334.963 kb on + strand, within MPMX19_00332at 334.963 kb on + strand, within MPMX19_00332at 334.963 kb on + strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 334.964 kb on - strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.116 kb on + strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.117 kb on - strand, within MPMX19_00332at 335.161 kb on + strand, within MPMX19_00332at 335.162 kb on - strand, within MPMX19_00332at 335.603 kb on + strandat 335.603 kb on + strandat 335.603 kb on + strandat 335.639 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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333,568 + +0.3
333,568 + -0.5
333,568 + -0.6
334,285 + -1.4
334,285 + -0.6
334,286 - -0.6
334,834 + MPMX19_00332 0.41 -0.1
334,834 + MPMX19_00332 0.41 +0.1
334,834 + MPMX19_00332 0.41 +1.1
334,835 - MPMX19_00332 0.41 +1.7
334,963 + MPMX19_00332 0.51 +0.4
334,963 + MPMX19_00332 0.51 +0.1
334,963 + MPMX19_00332 0.51 -0.8
334,963 + MPMX19_00332 0.51 -0.1
334,963 + MPMX19_00332 0.51 -1.6
334,963 + MPMX19_00332 0.51 -0.2
334,963 + MPMX19_00332 0.51 +0.4
334,964 - MPMX19_00332 0.51 -0.4
334,964 - MPMX19_00332 0.51 +0.4
334,964 - MPMX19_00332 0.51 -0.1
334,964 - MPMX19_00332 0.51 +0.1
334,964 - MPMX19_00332 0.51 -1.3
334,964 - MPMX19_00332 0.51 -1.2
334,964 - MPMX19_00332 0.51 -0.3
334,964 - MPMX19_00332 0.51 -0.2
334,964 - MPMX19_00332 0.51 -0.5
334,964 - MPMX19_00332 0.51 -0.6
334,964 - MPMX19_00332 0.51 +0.1
334,964 - MPMX19_00332 0.51 +0.3
334,964 - MPMX19_00332 0.51 +1.3
335,116 + MPMX19_00332 0.63 +0.1
335,116 + MPMX19_00332 0.63 -0.6
335,116 + MPMX19_00332 0.63 -1.2
335,116 + MPMX19_00332 0.63 -0.3
335,116 + MPMX19_00332 0.63 -0.0
335,116 + MPMX19_00332 0.63 +1.5
335,116 + MPMX19_00332 0.63 -1.4
335,116 + MPMX19_00332 0.63 -0.5
335,116 + MPMX19_00332 0.63 +0.1
335,116 + MPMX19_00332 0.63 -0.3
335,116 + MPMX19_00332 0.63 -0.0
335,116 + MPMX19_00332 0.63 -0.1
335,116 + MPMX19_00332 0.63 +0.5
335,116 + MPMX19_00332 0.63 -0.7
335,116 + MPMX19_00332 0.63 -1.8
335,116 + MPMX19_00332 0.63 -0.7
335,116 + MPMX19_00332 0.63 +0.2
335,116 + MPMX19_00332 0.63 +0.1
335,116 + MPMX19_00332 0.63 -1.1
335,116 + MPMX19_00332 0.63 -0.3
335,116 + MPMX19_00332 0.63 +0.6
335,116 + MPMX19_00332 0.63 +0.0
335,116 + MPMX19_00332 0.63 +0.4
335,116 + MPMX19_00332 0.63 -1.6
335,116 + MPMX19_00332 0.63 -0.4
335,116 + MPMX19_00332 0.63 -0.1
335,117 - MPMX19_00332 0.63 +0.5
335,117 - MPMX19_00332 0.63 -0.9
335,117 - MPMX19_00332 0.63 -2.5
335,117 - MPMX19_00332 0.63 -1.6
335,117 - MPMX19_00332 0.63 -2.1
335,117 - MPMX19_00332 0.63 -1.1
335,117 - MPMX19_00332 0.63 -1.9
335,117 - MPMX19_00332 0.63 -0.6
335,117 - MPMX19_00332 0.63 +1.0
335,117 - MPMX19_00332 0.63 -1.0
335,117 - MPMX19_00332 0.63 -0.6
335,117 - MPMX19_00332 0.63 -0.8
335,117 - MPMX19_00332 0.63 +0.7
335,117 - MPMX19_00332 0.63 -1.1
335,117 - MPMX19_00332 0.63 +0.8
335,117 - MPMX19_00332 0.63 +0.1
335,117 - MPMX19_00332 0.63 -1.0
335,117 - MPMX19_00332 0.63 -0.3
335,117 - MPMX19_00332 0.63 -1.9
335,117 - MPMX19_00332 0.63 +1.0
335,117 - MPMX19_00332 0.63 +0.5
335,117 - MPMX19_00332 0.63 -2.3
335,117 - MPMX19_00332 0.63 -0.6
335,117 - MPMX19_00332 0.63 -0.8
335,117 - MPMX19_00332 0.63 -1.7
335,117 - MPMX19_00332 0.63 -1.4
335,161 + MPMX19_00332 0.66 -0.9
335,162 - MPMX19_00332 0.66 -0.2
335,603 + -1.1
335,603 + -1.8
335,603 + +0.4
335,639 + +0.1

Or see this region's nucleotide sequence