Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00152

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00150 and MPMX19_00151 overlap by 4 nucleotidesMPMX19_00151 and MPMX19_00152 are separated by 45 nucleotidesMPMX19_00152 and MPMX19_00153 are separated by 31 nucleotidesMPMX19_00153 and MPMX19_00154 are separated by 14 nucleotidesMPMX19_00154 and MPMX19_00155 are separated by 8 nucleotides MPMX19_00150: MPMX19_00150 - hypothetical protein, at 159,872 to 160,174 _00150 MPMX19_00151: MPMX19_00151 - Tyrosine recombinase XerC, at 160,171 to 161,118 _00151 MPMX19_00152: MPMX19_00152 - hypothetical protein, at 161,164 to 162,177 _00152 MPMX19_00153: MPMX19_00153 - hypothetical protein, at 162,209 to 162,544 _00153 MPMX19_00154: MPMX19_00154 - hypothetical protein, at 162,559 to 163,077 _00154 MPMX19_00155: MPMX19_00155 - hypothetical protein, at 163,086 to 163,607 _00155 Position (kb) 161 162 163Strain fitness (log2 ratio) -2 -1 0 1at 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.288 kb on + strand, within MPMX19_00151at 160.288 kb on + strand, within MPMX19_00151at 160.289 kb on - strand, within MPMX19_00151at 160.289 kb on - strand, within MPMX19_00151at 160.402 kb on + strand, within MPMX19_00151at 160.402 kb on + strand, within MPMX19_00151at 160.402 kb on + strand, within MPMX19_00151at 160.402 kb on + strand, within MPMX19_00151at 160.402 kb on + strand, within MPMX19_00151at 160.402 kb on + strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.466 kb on + strand, within MPMX19_00151at 160.466 kb on + strand, within MPMX19_00151at 160.466 kb on + strand, within MPMX19_00151at 160.466 kb on + strand, within MPMX19_00151at 160.466 kb on + strand, within MPMX19_00151at 160.467 kb on - strand, within MPMX19_00151at 160.467 kb on - strand, within MPMX19_00151at 160.467 kb on - strand, within MPMX19_00151at 160.467 kb on - strand, within MPMX19_00151at 160.467 kb on - strand, within MPMX19_00151at 160.467 kb on - strand, within MPMX19_00151at 160.546 kb on + strand, within MPMX19_00151at 160.546 kb on + strand, within MPMX19_00151at 160.546 kb on + strand, within MPMX19_00151at 160.547 kb on - strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.901 kb on - strand, within MPMX19_00151at 161.004 kb on + strand, within MPMX19_00151at 161.005 kb on - strand, within MPMX19_00151at 161.057 kb on + strandat 161.147 kb on + strandat 161.147 kb on + strandat 161.148 kb on - strandat 161.159 kb on - strandat 161.159 kb on - strandat 161.229 kb on - strandat 161.257 kb on + strandat 161.258 kb on - strandat 161.258 kb on - strandat 161.306 kb on - strand, within MPMX19_00152at 161.355 kb on + strand, within MPMX19_00152at 161.356 kb on - strand, within MPMX19_00152at 161.501 kb on + strand, within MPMX19_00152at 161.561 kb on - strand, within MPMX19_00152at 162.104 kb on + strandat 162.125 kb on + strandat 162.223 kb on + strandat 162.296 kb on + strand, within MPMX19_00153at 162.296 kb on + strand, within MPMX19_00153at 162.296 kb on + strand, within MPMX19_00153at 162.296 kb on + strand, within MPMX19_00153at 162.296 kb on + strand, within MPMX19_00153at 162.296 kb on + strand, within MPMX19_00153at 162.297 kb on - strand, within MPMX19_00153at 162.297 kb on - strand, within MPMX19_00153at 162.297 kb on - strand, within MPMX19_00153at 162.362 kb on + strand, within MPMX19_00153at 162.362 kb on + strand, within MPMX19_00153at 162.362 kb on + strand, within MPMX19_00153at 162.362 kb on + strand, within MPMX19_00153at 162.368 kb on - strand, within MPMX19_00153at 162.376 kb on + strand, within MPMX19_00153at 162.377 kb on - strand, within MPMX19_00153at 162.377 kb on - strand, within MPMX19_00153at 162.690 kb on + strand, within MPMX19_00154at 162.690 kb on + strand, within MPMX19_00154at 162.690 kb on + strand, within MPMX19_00154at 162.690 kb on + strand, within MPMX19_00154at 162.690 kb on + strand, within MPMX19_00154at 162.691 kb on - strand, within MPMX19_00154at 162.691 kb on - strand, within MPMX19_00154at 162.691 kb on - strand, within MPMX19_00154at 162.691 kb on - strand, within MPMX19_00154at 162.691 kb on - strand, within MPMX19_00154at 162.691 kb on - strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.767 kb on + strand, within MPMX19_00154at 162.767 kb on + strand, within MPMX19_00154at 162.768 kb on - strand, within MPMX19_00154at 162.768 kb on - strand, within MPMX19_00154at 162.768 kb on - strand, within MPMX19_00154at 162.768 kb on - strand, within MPMX19_00154at 162.815 kb on - strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.887 kb on - strand, within MPMX19_00154at 162.887 kb on - strand, within MPMX19_00154at 162.887 kb on - strand, within MPMX19_00154at 162.887 kb on - strand, within MPMX19_00154at 162.887 kb on - strand, within MPMX19_00154at 162.887 kb on - strand, within MPMX19_00154at 162.887 kb on - strand, within MPMX19_00154at 163.066 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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160,229 + -0.1
160,229 + +0.5
160,229 + -0.7
160,229 + -0.4
160,229 + -0.7
160,229 + -2.0
160,229 + -0.5
160,230 - -0.6
160,230 - -0.9
160,230 - +0.7
160,230 - -0.4
160,230 - +0.2
160,230 - -1.3
160,230 - -0.1
160,288 + MPMX19_00151 0.12 +0.2
160,288 + MPMX19_00151 0.12 -1.4
160,289 - MPMX19_00151 0.12 -0.7
160,289 - MPMX19_00151 0.12 -0.7
160,402 + MPMX19_00151 0.24 +0.0
160,402 + MPMX19_00151 0.24 +1.5
160,402 + MPMX19_00151 0.24 -1.0
160,402 + MPMX19_00151 0.24 +0.0
160,402 + MPMX19_00151 0.24 -0.5
160,402 + MPMX19_00151 0.24 -1.4
160,403 - MPMX19_00151 0.24 -1.1
160,403 - MPMX19_00151 0.24 -1.3
160,403 - MPMX19_00151 0.24 +0.7
160,403 - MPMX19_00151 0.24 -0.3
160,403 - MPMX19_00151 0.24 -0.1
160,403 - MPMX19_00151 0.24 -0.2
160,403 - MPMX19_00151 0.24 +0.2
160,403 - MPMX19_00151 0.24 -0.9
160,403 - MPMX19_00151 0.24 +1.2
160,403 - MPMX19_00151 0.24 -0.3
160,403 - MPMX19_00151 0.24 -0.2
160,403 - MPMX19_00151 0.24 -1.1
160,403 - MPMX19_00151 0.24 -1.2
160,403 - MPMX19_00151 0.24 -1.1
160,403 - MPMX19_00151 0.24 -0.6
160,466 + MPMX19_00151 0.31 -0.5
160,466 + MPMX19_00151 0.31 -0.9
160,466 + MPMX19_00151 0.31 +0.6
160,466 + MPMX19_00151 0.31 +1.3
160,466 + MPMX19_00151 0.31 -0.4
160,467 - MPMX19_00151 0.31 -0.8
160,467 - MPMX19_00151 0.31 -1.4
160,467 - MPMX19_00151 0.31 -1.2
160,467 - MPMX19_00151 0.31 -2.1
160,467 - MPMX19_00151 0.31 -1.0
160,467 - MPMX19_00151 0.31 -0.8
160,546 + MPMX19_00151 0.40 +0.0
160,546 + MPMX19_00151 0.40 -1.1
160,546 + MPMX19_00151 0.40 -0.4
160,547 - MPMX19_00151 0.40 -0.3
160,708 + MPMX19_00151 0.57 -0.1
160,708 + MPMX19_00151 0.57 -0.9
160,708 + MPMX19_00151 0.57 +1.4
160,708 + MPMX19_00151 0.57 -2.2
160,708 + MPMX19_00151 0.57 +0.6
160,708 + MPMX19_00151 0.57 -1.3
160,708 + MPMX19_00151 0.57 +0.0
160,708 + MPMX19_00151 0.57 +0.7
160,708 + MPMX19_00151 0.57 -0.5
160,708 + MPMX19_00151 0.57 -1.1
160,708 + MPMX19_00151 0.57 -0.3
160,709 - MPMX19_00151 0.57 -1.3
160,709 - MPMX19_00151 0.57 +0.4
160,709 - MPMX19_00151 0.57 -0.3
160,709 - MPMX19_00151 0.57 +0.6
160,709 - MPMX19_00151 0.57 -0.8
160,709 - MPMX19_00151 0.57 -0.6
160,709 - MPMX19_00151 0.57 -0.8
160,709 - MPMX19_00151 0.57 +0.2
160,709 - MPMX19_00151 0.57 -0.7
160,901 - MPMX19_00151 0.77 +1.5
161,004 + MPMX19_00151 0.88 -0.4
161,005 - MPMX19_00151 0.88 +1.0
161,057 + -0.4
161,147 + -0.1
161,147 + +0.9
161,148 - -0.3
161,159 - -0.6
161,159 - +0.2
161,229 - -0.6
161,257 + -0.7
161,258 - -0.4
161,258 - +1.0
161,306 - MPMX19_00152 0.14 -2.3
161,355 + MPMX19_00152 0.19 +0.3
161,356 - MPMX19_00152 0.19 -0.3
161,501 + MPMX19_00152 0.33 -1.4
161,561 - MPMX19_00152 0.39 -0.4
162,104 + +0.7
162,125 + -2.2
162,223 + +0.5
162,296 + MPMX19_00153 0.26 +0.9
162,296 + MPMX19_00153 0.26 +0.7
162,296 + MPMX19_00153 0.26 -0.7
162,296 + MPMX19_00153 0.26 -1.4
162,296 + MPMX19_00153 0.26 -0.8
162,296 + MPMX19_00153 0.26 -1.0
162,297 - MPMX19_00153 0.26 +0.7
162,297 - MPMX19_00153 0.26 -0.2
162,297 - MPMX19_00153 0.26 -1.2
162,362 + MPMX19_00153 0.46 -0.6
162,362 + MPMX19_00153 0.46 -0.2
162,362 + MPMX19_00153 0.46 -0.1
162,362 + MPMX19_00153 0.46 -0.1
162,368 - MPMX19_00153 0.47 +0.2
162,376 + MPMX19_00153 0.50 -0.7
162,377 - MPMX19_00153 0.50 -0.8
162,377 - MPMX19_00153 0.50 -0.0
162,690 + MPMX19_00154 0.25 -1.0
162,690 + MPMX19_00154 0.25 -0.5
162,690 + MPMX19_00154 0.25 +0.5
162,690 + MPMX19_00154 0.25 +0.3
162,690 + MPMX19_00154 0.25 -0.8
162,691 - MPMX19_00154 0.25 +0.7
162,691 - MPMX19_00154 0.25 +0.7
162,691 - MPMX19_00154 0.25 -1.3
162,691 - MPMX19_00154 0.25 -0.8
162,691 - MPMX19_00154 0.25 -0.7
162,691 - MPMX19_00154 0.25 +0.5
162,742 + MPMX19_00154 0.35 +0.9
162,742 + MPMX19_00154 0.35 -0.3
162,742 + MPMX19_00154 0.35 -1.1
162,742 + MPMX19_00154 0.35 -0.9
162,742 + MPMX19_00154 0.35 -0.3
162,742 + MPMX19_00154 0.35 -2.1
162,742 + MPMX19_00154 0.35 -1.1
162,742 + MPMX19_00154 0.35 -2.3
162,742 + MPMX19_00154 0.35 -0.1
162,742 + MPMX19_00154 0.35 +0.5
162,742 + MPMX19_00154 0.35 -0.0
162,742 + MPMX19_00154 0.35 -0.3
162,742 + MPMX19_00154 0.35 +0.2
162,742 + MPMX19_00154 0.35 -0.3
162,742 + MPMX19_00154 0.35 -1.1
162,743 - MPMX19_00154 0.35 +0.4
162,743 - MPMX19_00154 0.35 +0.0
162,743 - MPMX19_00154 0.35 +0.2
162,743 - MPMX19_00154 0.35 +0.4
162,743 - MPMX19_00154 0.35 -0.2
162,743 - MPMX19_00154 0.35 -0.6
162,743 - MPMX19_00154 0.35 -1.3
162,743 - MPMX19_00154 0.35 -1.1
162,743 - MPMX19_00154 0.35 -0.6
162,743 - MPMX19_00154 0.35 -0.3
162,743 - MPMX19_00154 0.35 +1.2
162,743 - MPMX19_00154 0.35 -0.2
162,743 - MPMX19_00154 0.35 -0.9
162,743 - MPMX19_00154 0.35 -0.3
162,743 - MPMX19_00154 0.35 -0.5
162,743 - MPMX19_00154 0.35 -0.7
162,767 + MPMX19_00154 0.40 +0.3
162,767 + MPMX19_00154 0.40 +0.2
162,768 - MPMX19_00154 0.40 -1.4
162,768 - MPMX19_00154 0.40 -1.1
162,768 - MPMX19_00154 0.40 -1.2
162,768 - MPMX19_00154 0.40 +0.4
162,815 - MPMX19_00154 0.49 +0.7
162,886 + MPMX19_00154 0.63 -2.2
162,886 + MPMX19_00154 0.63 -0.1
162,886 + MPMX19_00154 0.63 -0.1
162,886 + MPMX19_00154 0.63 -0.7
162,886 + MPMX19_00154 0.63 +0.2
162,886 + MPMX19_00154 0.63 -0.1
162,886 + MPMX19_00154 0.63 -1.3
162,886 + MPMX19_00154 0.63 -2.1
162,886 + MPMX19_00154 0.63 -0.5
162,886 + MPMX19_00154 0.63 -0.4
162,886 + MPMX19_00154 0.63 -2.1
162,886 + MPMX19_00154 0.63 +0.4
162,886 + MPMX19_00154 0.63 -0.5
162,886 + MPMX19_00154 0.63 -0.1
162,887 - MPMX19_00154 0.63 +0.7
162,887 - MPMX19_00154 0.63 +1.7
162,887 - MPMX19_00154 0.63 +1.6
162,887 - MPMX19_00154 0.63 -0.4
162,887 - MPMX19_00154 0.63 -0.5
162,887 - MPMX19_00154 0.63 +0.9
162,887 - MPMX19_00154 0.63 -0.6
163,066 - -0.3

Or see this region's nucleotide sequence