Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00081 and MPMX19_00082 are separated by 35 nucleotides MPMX19_00082 and MPMX19_00083 are separated by 135 nucleotides MPMX19_00083 and MPMX19_00084 are separated by 12 nucleotides
MPMX19_00081: MPMX19_00081 - 50S ribosomal protein L35, at 87,166 to 87,417
_00081
MPMX19_00082: MPMX19_00082 - 50S ribosomal protein L20, at 87,453 to 87,824
_00082
MPMX19_00083: MPMX19_00083 - Phenylalanine--tRNA ligase alpha subunit, at 87,960 to 89,027
_00083
MPMX19_00084: MPMX19_00084 - Phenylalanine--tRNA ligase beta subunit, at 89,040 to 91,451
_00084
Position (kb) 87
88
89
90 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 86.963 kb on + strand at 86.963 kb on + strand at 86.963 kb on + strand at 86.963 kb on + strand at 86.964 kb on - strand at 86.964 kb on - strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.968 kb on + strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.969 kb on - strand at 86.998 kb on + strand at 86.998 kb on + strand at 86.998 kb on + strand at 86.998 kb on + strand at 86.999 kb on - strand at 86.999 kb on - strand at 87.117 kb on + strand at 87.117 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 86,963 + -0.3 86,963 + -0.6 86,963 + -3.1 86,963 + +0.1 86,964 - -0.3 86,964 - +0.2 86,968 + +0.7 86,968 + -0.3 86,968 + -0.4 86,968 + +0.7 86,968 + +0.2 86,968 + +0.3 86,968 + -1.4 86,968 + +0.5 86,968 + +0.4 86,968 + -0.0 86,968 + -0.8 86,968 + +0.3 86,968 + +0.1 86,968 + +0.2 86,968 + -0.6 86,969 - -0.3 86,969 - +0.5 86,969 - -0.8 86,969 - -0.9 86,969 - -1.4 86,969 - -0.5 86,969 - -2.2 86,969 - -1.0 86,969 - +0.3 86,969 - -1.0 86,969 - +0.0 86,969 - -0.6 86,998 + +1.0 86,998 + +1.0 86,998 + -2.4 86,998 + -1.3 86,999 - -2.3 86,999 - +0.2 87,117 + -0.6 87,117 + -2.4
Or see this region's nucleotide sequence