Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00044 and MPMX19_00045 are separated by 37 nucleotides MPMX19_00045 and MPMX19_00046 are separated by 150 nucleotides MPMX19_00046 and MPMX19_00047 are separated by 238 nucleotides
MPMX19_00044: MPMX19_00044 - hypothetical protein, at 46,629 to 47,423
_00044
MPMX19_00045: MPMX19_00045 - Alkaline phosphatase synthesis transcriptional regulatory protein SphR, at 47,461 to 48,165
_00045
MPMX19_00046: MPMX19_00046 - hypothetical protein, at 48,316 to 48,834
_00046
MPMX19_00047: MPMX19_00047 - Riboflavin biosynthesis protein RibBA, at 49,073 to 50,419
_00047
Position (kb) 48
49 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 48.172 kb on + strand at 48.172 kb on + strand at 48.172 kb on + strand at 48.172 kb on + strand at 48.172 kb on + strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.246 kb on + strand at 48.246 kb on + strand at 48.246 kb on + strand at 48.246 kb on + strand at 48.246 kb on + strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.755 kb on + strand, within MPMX19_00046 at 48.755 kb on + strand, within MPMX19_00046 at 48.755 kb on + strand, within MPMX19_00046 at 48.756 kb on - strand, within MPMX19_00046 at 48.756 kb on - strand, within MPMX19_00046 at 48.875 kb on + strand at 48.875 kb on + strand at 48.875 kb on + strand at 48.875 kb on + strand at 48.875 kb on + strand at 48.875 kb on + strand at 48.876 kb on - strand at 48.876 kb on - strand at 48.876 kb on - strand at 48.876 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 48,172 + -1.3 48,172 + -0.1 48,172 + -0.3 48,172 + -1.4 48,172 + +1.0 48,173 - +0.4 48,173 - -0.0 48,173 - -0.6 48,173 - -1.0 48,173 - -0.1 48,173 - -0.9 48,173 - +0.6 48,173 - -0.3 48,173 - -1.4 48,173 - -0.6 48,173 - -0.5 48,246 + -0.7 48,246 + +0.3 48,246 + +1.1 48,246 + -0.7 48,246 + -0.1 48,247 - -0.2 48,247 - -0.3 48,247 - +0.3 48,247 - +0.7 48,247 - -0.1 48,247 - +0.5 48,247 - +0.4 48,247 - -1.2 48,247 - -0.7 48,249 + +0.7 48,249 + -1.4 48,249 + -0.3 48,249 + -2.1 48,249 + +0.7 48,249 + -0.3 48,249 + -1.1 48,250 - -0.1 48,250 - -0.3 48,250 - +1.2 48,250 - +1.2 48,250 - -0.8 48,250 - -0.2 48,250 - +0.3 48,250 - -1.1 48,250 - -0.8 48,250 - -2.0 48,250 - -0.8 48,250 - +0.4 48,250 - -0.0 48,250 - -0.4 48,250 - +0.7 48,250 - -0.3 48,250 - -1.2 48,250 - -1.3 48,250 - -0.3 48,250 - -0.8 48,250 - -0.2 48,250 - -0.3 48,250 - -2.3 48,250 - +0.2 48,250 - -0.3 48,250 - -0.8 48,250 - -0.9 48,250 - +0.2 48,250 - -0.9 48,250 - -0.0 48,250 - -0.6 48,755 + MPMX19_00046 0.85 -0.3 48,755 + MPMX19_00046 0.85 -0.3 48,755 + MPMX19_00046 0.85 -2.7 48,756 - MPMX19_00046 0.85 -1.1 48,756 - MPMX19_00046 0.85 -0.1 48,875 + +0.9 48,875 + -2.8 48,875 + +0.6 48,875 + -1.8 48,875 + -0.3 48,875 + -0.8 48,876 - -0.1 48,876 - +0.9 48,876 - -0.5 48,876 - -0.9
Or see this region's nucleotide sequence