Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00043 and MPMX19_00044 are separated by 218 nucleotides MPMX19_00044 and MPMX19_00045 are separated by 37 nucleotides MPMX19_00045 and MPMX19_00046 are separated by 150 nucleotides
MPMX19_00043: MPMX19_00043 - Ribonuclease BN, at 45,490 to 46,410
_00043
MPMX19_00044: MPMX19_00044 - hypothetical protein, at 46,629 to 47,423
_00044
MPMX19_00045: MPMX19_00045 - Alkaline phosphatase synthesis transcriptional regulatory protein SphR, at 47,461 to 48,165
_00045
MPMX19_00046: MPMX19_00046 - hypothetical protein, at 48,316 to 48,834
_00046
Position (kb) 46
47
48 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 45.690 kb on - strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.704 kb on + strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.705 kb on - strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.716 kb on + strand, within MPMX19_00043 at 45.717 kb on - strand, within MPMX19_00043 at 45.717 kb on - strand, within MPMX19_00043 at 45.717 kb on - strand, within MPMX19_00043 at 45.717 kb on - strand, within MPMX19_00043 at 45.717 kb on - strand, within MPMX19_00043 at 45.717 kb on - strand, within MPMX19_00043 at 46.244 kb on + strand, within MPMX19_00043 at 46.244 kb on + strand, within MPMX19_00043 at 46.244 kb on + strand, within MPMX19_00043 at 46.245 kb on - strand, within MPMX19_00043 at 46.245 kb on - strand, within MPMX19_00043 at 46.275 kb on + strand, within MPMX19_00043 at 46.275 kb on + strand, within MPMX19_00043 at 46.276 kb on - strand, within MPMX19_00043 at 46.276 kb on - strand, within MPMX19_00043 at 46.276 kb on - strand, within MPMX19_00043 at 46.415 kb on - strand at 46.417 kb on + strand at 46.417 kb on + strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.418 kb on - strand at 46.468 kb on + strand at 46.506 kb on - strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.530 kb on + strand at 46.531 kb on - strand at 46.531 kb on - strand at 46.540 kb on + strand at 46.540 kb on + strand at 46.540 kb on + strand at 46.540 kb on + strand at 46.540 kb on + strand at 46.540 kb on + strand at 46.541 kb on - strand at 46.541 kb on - strand at 46.541 kb on - strand at 46.541 kb on - strand at 46.541 kb on - strand at 46.541 kb on - strand at 46.541 kb on - strand at 46.541 kb on - strand at 47.304 kb on + strand, within MPMX19_00044 at 47.304 kb on + strand, within MPMX19_00044 at 47.304 kb on + strand, within MPMX19_00044 at 47.305 kb on - strand, within MPMX19_00044 at 47.305 kb on - strand, within MPMX19_00044 at 47.305 kb on - strand, within MPMX19_00044 at 47.305 kb on - strand, within MPMX19_00044 at 47.305 kb on - strand, within MPMX19_00044 at 47.305 kb on - strand, within MPMX19_00044 at 48.172 kb on + strand at 48.172 kb on + strand at 48.172 kb on + strand at 48.172 kb on + strand at 48.172 kb on + strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.173 kb on - strand at 48.246 kb on + strand at 48.246 kb on + strand at 48.246 kb on + strand at 48.246 kb on + strand at 48.246 kb on + strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.249 kb on + strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand at 48.250 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 45,690 - MPMX19_00043 0.22 -0.1 45,704 + MPMX19_00043 0.23 +0.5 45,704 + MPMX19_00043 0.23 +1.0 45,704 + MPMX19_00043 0.23 -0.9 45,704 + MPMX19_00043 0.23 -0.1 45,704 + MPMX19_00043 0.23 +0.2 45,704 + MPMX19_00043 0.23 +0.0 45,704 + MPMX19_00043 0.23 +0.3 45,704 + MPMX19_00043 0.23 -1.8 45,704 + MPMX19_00043 0.23 -0.9 45,704 + MPMX19_00043 0.23 +0.7 45,704 + MPMX19_00043 0.23 -1.0 45,704 + MPMX19_00043 0.23 -0.1 45,704 + MPMX19_00043 0.23 -1.1 45,704 + MPMX19_00043 0.23 -1.5 45,704 + MPMX19_00043 0.23 -1.8 45,704 + MPMX19_00043 0.23 +1.2 45,705 - MPMX19_00043 0.23 -0.4 45,705 - MPMX19_00043 0.23 -1.0 45,705 - MPMX19_00043 0.23 -0.8 45,705 - MPMX19_00043 0.23 +0.4 45,705 - MPMX19_00043 0.23 -0.3 45,705 - MPMX19_00043 0.23 -0.3 45,705 - MPMX19_00043 0.23 -0.6 45,705 - MPMX19_00043 0.23 -1.6 45,705 - MPMX19_00043 0.23 -0.8 45,705 - MPMX19_00043 0.23 -0.7 45,705 - MPMX19_00043 0.23 -0.6 45,705 - MPMX19_00043 0.23 -1.1 45,705 - MPMX19_00043 0.23 -2.3 45,705 - MPMX19_00043 0.23 -0.1 45,705 - MPMX19_00043 0.23 +2.1 45,705 - MPMX19_00043 0.23 -0.4 45,705 - MPMX19_00043 0.23 +0.0 45,716 + MPMX19_00043 0.25 -1.3 45,716 + MPMX19_00043 0.25 -0.5 45,716 + MPMX19_00043 0.25 -1.1 45,716 + MPMX19_00043 0.25 -1.4 45,716 + MPMX19_00043 0.25 -0.3 45,716 + MPMX19_00043 0.25 -1.1 45,716 + MPMX19_00043 0.25 +0.6 45,716 + MPMX19_00043 0.25 +0.3 45,716 + MPMX19_00043 0.25 +0.2 45,716 + MPMX19_00043 0.25 +0.2 45,716 + MPMX19_00043 0.25 -0.4 45,717 - MPMX19_00043 0.25 +0.2 45,717 - MPMX19_00043 0.25 +2.2 45,717 - MPMX19_00043 0.25 +0.9 45,717 - MPMX19_00043 0.25 -0.1 45,717 - MPMX19_00043 0.25 +0.7 45,717 - MPMX19_00043 0.25 -0.1 46,244 + MPMX19_00043 0.82 -1.6 46,244 + MPMX19_00043 0.82 -1.7 46,244 + MPMX19_00043 0.82 +0.1 46,245 - MPMX19_00043 0.82 +0.0 46,245 - MPMX19_00043 0.82 +0.2 46,275 + MPMX19_00043 0.85 -0.2 46,275 + MPMX19_00043 0.85 +1.1 46,276 - MPMX19_00043 0.85 +1.2 46,276 - MPMX19_00043 0.85 +0.0 46,276 - MPMX19_00043 0.85 -2.0 46,415 - -0.1 46,417 + +0.6 46,417 + -0.4 46,418 - -0.6 46,418 - +0.2 46,418 - +0.7 46,418 - -1.0 46,418 - -0.1 46,418 - -0.3 46,418 - -0.4 46,418 - +0.4 46,418 - -0.3 46,418 - +0.6 46,418 - +0.7 46,418 - -0.1 46,468 + -0.7 46,506 - -0.6 46,530 + -0.1 46,530 + -0.3 46,530 + -1.1 46,530 + +0.5 46,530 + -1.1 46,530 + -0.2 46,530 + -1.8 46,530 + -0.8 46,530 + +0.2 46,531 - -0.7 46,531 - -1.6 46,540 + +0.2 46,540 + -0.7 46,540 + -1.0 46,540 + -0.7 46,540 + -0.5 46,540 + +1.1 46,541 - -2.8 46,541 - -0.7 46,541 - +0.7 46,541 - +0.3 46,541 - +0.2 46,541 - -0.0 46,541 - -1.8 46,541 - -1.1 47,304 + MPMX19_00044 0.85 -0.1 47,304 + MPMX19_00044 0.85 +0.5 47,304 + MPMX19_00044 0.85 +0.2 47,305 - MPMX19_00044 0.85 -1.1 47,305 - MPMX19_00044 0.85 -0.8 47,305 - MPMX19_00044 0.85 +0.2 47,305 - MPMX19_00044 0.85 +0.1 47,305 - MPMX19_00044 0.85 -0.2 47,305 - MPMX19_00044 0.85 +0.2 48,172 + -1.3 48,172 + -0.1 48,172 + -0.3 48,172 + -1.4 48,172 + +1.0 48,173 - +0.4 48,173 - -0.0 48,173 - -0.6 48,173 - -1.0 48,173 - -0.1 48,173 - -0.9 48,173 - +0.6 48,173 - -0.3 48,173 - -1.4 48,173 - -0.6 48,173 - -0.5 48,246 + -0.7 48,246 + +0.3 48,246 + +1.1 48,246 + -0.7 48,246 + -0.1 48,247 - -0.2 48,247 - -0.3 48,247 - +0.3 48,247 - +0.7 48,247 - -0.1 48,247 - +0.5 48,247 - +0.4 48,247 - -1.2 48,247 - -0.7 48,249 + +0.7 48,249 + -1.4 48,249 + -0.3 48,249 + -2.1 48,249 + +0.7 48,249 + -0.3 48,249 + -1.1 48,250 - -0.1 48,250 - -0.3 48,250 - +1.2 48,250 - +1.2 48,250 - -0.8 48,250 - -0.2 48,250 - +0.3 48,250 - -1.1 48,250 - -0.8 48,250 - -2.0 48,250 - -0.8 48,250 - +0.4 48,250 - -0.0 48,250 - -0.4 48,250 - +0.7 48,250 - -0.3 48,250 - -1.2 48,250 - -1.3 48,250 - -0.3 48,250 - -0.8 48,250 - -0.2 48,250 - -0.3 48,250 - -2.3 48,250 - +0.2 48,250 - -0.3 48,250 - -0.8 48,250 - -0.9 48,250 - +0.2 48,250 - -0.9 48,250 - -0.0 48,250 - -0.6
Or see this region's nucleotide sequence