Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00015

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00014 and MPMX19_00015 overlap by 4 nucleotidesMPMX19_00015 and MPMX19_00016 are separated by 211 nucleotides MPMX19_00014: MPMX19_00014 - hypothetical protein, at 17,194 to 19,449 _00014 MPMX19_00015: MPMX19_00015 - hypothetical protein, at 19,446 to 20,219 _00015 MPMX19_00016: MPMX19_00016 - Adenosine deaminase, at 20,431 to 22,002 _00016 Position (kb) 19 20 21Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 18.454 kb on + strand, within MPMX19_00014at 18.454 kb on + strand, within MPMX19_00014at 18.454 kb on + strand, within MPMX19_00014at 18.454 kb on + strand, within MPMX19_00014at 18.455 kb on - strand, within MPMX19_00014at 18.455 kb on - strand, within MPMX19_00014at 18.455 kb on - strand, within MPMX19_00014at 18.455 kb on - strand, within MPMX19_00014at 18.455 kb on - strand, within MPMX19_00014at 18.455 kb on - strand, within MPMX19_00014at 18.565 kb on + strand, within MPMX19_00014at 18.565 kb on + strand, within MPMX19_00014at 18.565 kb on + strand, within MPMX19_00014at 18.565 kb on + strand, within MPMX19_00014at 18.565 kb on + strand, within MPMX19_00014at 18.565 kb on + strand, within MPMX19_00014at 18.565 kb on + strand, within MPMX19_00014at 18.565 kb on + strand, within MPMX19_00014at 18.565 kb on + strand, within MPMX19_00014at 18.565 kb on + strand, within MPMX19_00014at 18.565 kb on + strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.566 kb on - strand, within MPMX19_00014at 18.985 kb on + strand, within MPMX19_00014at 18.985 kb on + strand, within MPMX19_00014at 18.985 kb on + strand, within MPMX19_00014at 18.985 kb on + strand, within MPMX19_00014at 18.985 kb on + strand, within MPMX19_00014at 18.986 kb on - strand, within MPMX19_00014at 19.024 kb on + strand, within MPMX19_00014at 19.025 kb on - strand, within MPMX19_00014at 19.135 kb on + strand, within MPMX19_00014at 19.136 kb on - strand, within MPMX19_00014at 19.839 kb on + strand, within MPMX19_00015at 19.839 kb on + strand, within MPMX19_00015at 19.839 kb on + strand, within MPMX19_00015at 19.840 kb on - strand, within MPMX19_00015at 19.840 kb on - strand, within MPMX19_00015at 19.840 kb on - strand, within MPMX19_00015at 19.840 kb on - strand, within MPMX19_00015at 19.840 kb on - strand, within MPMX19_00015at 19.840 kb on - strand, within MPMX19_00015at 20.233 kb on + strandat 20.233 kb on + strandat 20.233 kb on + strandat 20.233 kb on + strandat 20.234 kb on - strandat 20.234 kb on - strandat 20.234 kb on - strandat 20.234 kb on - strandat 20.234 kb on - strandat 20.252 kb on + strandat 20.252 kb on + strandat 20.252 kb on + strandat 20.252 kb on + strandat 20.252 kb on + strandat 20.252 kb on + strandat 20.253 kb on - strandat 20.253 kb on - strandat 20.286 kb on + strandat 20.286 kb on + strandat 20.287 kb on - strandat 20.287 kb on - strandat 20.287 kb on - strandat 20.287 kb on - strandat 20.346 kb on - strandat 20.346 kb on - strandat 20.346 kb on - strandat 20.371 kb on + strandat 20.432 kb on + strandat 20.636 kb on + strand, within MPMX19_00016at 20.636 kb on + strand, within MPMX19_00016at 20.668 kb on + strand, within MPMX19_00016at 20.668 kb on + strand, within MPMX19_00016at 20.668 kb on + strand, within MPMX19_00016at 20.668 kb on + strand, within MPMX19_00016at 20.668 kb on + strand, within MPMX19_00016at 20.668 kb on + strand, within MPMX19_00016at 20.668 kb on + strand, within MPMX19_00016at 20.669 kb on - strand, within MPMX19_00016at 20.669 kb on - strand, within MPMX19_00016at 20.669 kb on - strand, within MPMX19_00016at 20.669 kb on - strand, within MPMX19_00016at 20.669 kb on - strand, within MPMX19_00016at 20.669 kb on - strand, within MPMX19_00016at 20.669 kb on - strand, within MPMX19_00016at 20.669 kb on - strand, within MPMX19_00016at 20.669 kb on - strand, within MPMX19_00016at 20.669 kb on - strand, within MPMX19_00016at 20.669 kb on - strand, within MPMX19_00016at 20.669 kb on - strand, within MPMX19_00016at 20.744 kb on + strand, within MPMX19_00016at 20.744 kb on + strand, within MPMX19_00016at 20.745 kb on - strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.867 kb on + strand, within MPMX19_00016at 20.868 kb on - strand, within MPMX19_00016at 20.868 kb on - strand, within MPMX19_00016at 20.868 kb on - strand, within MPMX19_00016at 20.868 kb on - strand, within MPMX19_00016at 20.868 kb on - strand, within MPMX19_00016at 20.868 kb on - strand, within MPMX19_00016at 20.868 kb on - strand, within MPMX19_00016at 20.868 kb on - strand, within MPMX19_00016at 20.868 kb on - strand, within MPMX19_00016at 20.868 kb on - strand, within MPMX19_00016at 20.868 kb on - strand, within MPMX19_00016at 20.868 kb on - strand, within MPMX19_00016at 20.868 kb on - strand, within MPMX19_00016at 20.868 kb on - strand, within MPMX19_00016at 20.868 kb on - strand, within MPMX19_00016at 20.868 kb on - strand, within MPMX19_00016at 21.047 kb on + strand, within MPMX19_00016at 21.047 kb on + strand, within MPMX19_00016at 21.047 kb on + strand, within MPMX19_00016at 21.047 kb on + strand, within MPMX19_00016at 21.047 kb on + strand, within MPMX19_00016at 21.048 kb on - strand, within MPMX19_00016at 21.048 kb on - strand, within MPMX19_00016at 21.048 kb on - strand, within MPMX19_00016at 21.082 kb on + strand, within MPMX19_00016at 21.083 kb on - strand, within MPMX19_00016at 21.149 kb on + strand, within MPMX19_00016at 21.149 kb on + strand, within MPMX19_00016at 21.149 kb on + strand, within MPMX19_00016at 21.149 kb on + strand, within MPMX19_00016at 21.149 kb on + strand, within MPMX19_00016at 21.149 kb on + strand, within MPMX19_00016at 21.149 kb on + strand, within MPMX19_00016at 21.150 kb on - strand, within MPMX19_00016at 21.150 kb on - strand, within MPMX19_00016at 21.150 kb on - strand, within MPMX19_00016at 21.150 kb on - strand, within MPMX19_00016at 21.150 kb on - strand, within MPMX19_00016at 21.150 kb on - strand, within MPMX19_00016at 21.191 kb on + strand, within MPMX19_00016at 21.192 kb on - strand, within MPMX19_00016at 21.192 kb on - strand, within MPMX19_00016

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
18,454 + MPMX19_00014 0.56 -0.1
18,454 + MPMX19_00014 0.56 -1.3
18,454 + MPMX19_00014 0.56 -1.8
18,454 + MPMX19_00014 0.56 -0.8
18,455 - MPMX19_00014 0.56 +0.2
18,455 - MPMX19_00014 0.56 +0.2
18,455 - MPMX19_00014 0.56 -0.3
18,455 - MPMX19_00014 0.56 -1.2
18,455 - MPMX19_00014 0.56 -1.1
18,455 - MPMX19_00014 0.56 +0.5
18,565 + MPMX19_00014 0.61 +0.2
18,565 + MPMX19_00014 0.61 -1.0
18,565 + MPMX19_00014 0.61 -0.5
18,565 + MPMX19_00014 0.61 -0.9
18,565 + MPMX19_00014 0.61 +0.4
18,565 + MPMX19_00014 0.61 -1.1
18,565 + MPMX19_00014 0.61 -2.0
18,565 + MPMX19_00014 0.61 -1.4
18,565 + MPMX19_00014 0.61 -0.4
18,565 + MPMX19_00014 0.61 -0.4
18,565 + MPMX19_00014 0.61 +0.7
18,566 - MPMX19_00014 0.61 +0.7
18,566 - MPMX19_00014 0.61 -0.6
18,566 - MPMX19_00014 0.61 +0.3
18,566 - MPMX19_00014 0.61 -0.2
18,566 - MPMX19_00014 0.61 +0.7
18,566 - MPMX19_00014 0.61 +0.6
18,566 - MPMX19_00014 0.61 -0.6
18,566 - MPMX19_00014 0.61 +0.0
18,566 - MPMX19_00014 0.61 -0.3
18,566 - MPMX19_00014 0.61 +0.5
18,566 - MPMX19_00014 0.61 +0.0
18,566 - MPMX19_00014 0.61 +0.2
18,566 - MPMX19_00014 0.61 -1.5
18,566 - MPMX19_00014 0.61 -1.3
18,566 - MPMX19_00014 0.61 -0.3
18,566 - MPMX19_00014 0.61 +0.0
18,566 - MPMX19_00014 0.61 +0.9
18,566 - MPMX19_00014 0.61 -1.1
18,566 - MPMX19_00014 0.61 -1.8
18,566 - MPMX19_00014 0.61 +0.6
18,566 - MPMX19_00014 0.61 -0.6
18,566 - MPMX19_00014 0.61 -0.2
18,985 + MPMX19_00014 0.79 +0.6
18,985 + MPMX19_00014 0.79 -1.8
18,985 + MPMX19_00014 0.79 -0.1
18,985 + MPMX19_00014 0.79 +0.7
18,985 + MPMX19_00014 0.79 +0.2
18,986 - MPMX19_00014 0.79 -1.4
19,024 + MPMX19_00014 0.81 +0.1
19,025 - MPMX19_00014 0.81 -0.8
19,135 + MPMX19_00014 0.86 +1.4
19,136 - MPMX19_00014 0.86 -0.3
19,839 + MPMX19_00015 0.51 +0.6
19,839 + MPMX19_00015 0.51 -0.2
19,839 + MPMX19_00015 0.51 -1.4
19,840 - MPMX19_00015 0.51 -0.7
19,840 - MPMX19_00015 0.51 -0.5
19,840 - MPMX19_00015 0.51 -1.7
19,840 - MPMX19_00015 0.51 -1.3
19,840 - MPMX19_00015 0.51 -1.6
19,840 - MPMX19_00015 0.51 -1.7
20,233 + -2.0
20,233 + -1.4
20,233 + -1.3
20,233 + -1.4
20,234 - -2.8
20,234 - +1.0
20,234 - -0.7
20,234 - -0.9
20,234 - -0.4
20,252 + -0.7
20,252 + -1.2
20,252 + -0.2
20,252 + -0.3
20,252 + -0.2
20,252 + -0.8
20,253 - -0.7
20,253 - -0.2
20,286 + +0.9
20,286 + -0.4
20,287 - -0.3
20,287 - +0.7
20,287 - +0.0
20,287 - +0.6
20,346 - -0.5
20,346 - +0.6
20,346 - +0.1
20,371 + -1.7
20,432 + -0.2
20,636 + MPMX19_00016 0.13 -1.3
20,636 + MPMX19_00016 0.13 -0.5
20,668 + MPMX19_00016 0.15 -1.7
20,668 + MPMX19_00016 0.15 -1.0
20,668 + MPMX19_00016 0.15 -0.6
20,668 + MPMX19_00016 0.15 +0.9
20,668 + MPMX19_00016 0.15 +1.0
20,668 + MPMX19_00016 0.15 +0.2
20,668 + MPMX19_00016 0.15 +0.5
20,669 - MPMX19_00016 0.15 -1.8
20,669 - MPMX19_00016 0.15 +0.2
20,669 - MPMX19_00016 0.15 +1.3
20,669 - MPMX19_00016 0.15 +0.5
20,669 - MPMX19_00016 0.15 +0.0
20,669 - MPMX19_00016 0.15 -0.6
20,669 - MPMX19_00016 0.15 -1.2
20,669 - MPMX19_00016 0.15 -1.1
20,669 - MPMX19_00016 0.15 -0.6
20,669 - MPMX19_00016 0.15 +0.2
20,669 - MPMX19_00016 0.15 +0.1
20,669 - MPMX19_00016 0.15 +0.7
20,744 + MPMX19_00016 0.20 +0.7
20,744 + MPMX19_00016 0.20 -1.8
20,745 - MPMX19_00016 0.20 -0.4
20,867 + MPMX19_00016 0.28 -0.6
20,867 + MPMX19_00016 0.28 -0.5
20,867 + MPMX19_00016 0.28 -2.1
20,867 + MPMX19_00016 0.28 -0.3
20,867 + MPMX19_00016 0.28 -0.1
20,867 + MPMX19_00016 0.28 +0.0
20,867 + MPMX19_00016 0.28 +0.0
20,867 + MPMX19_00016 0.28 -0.3
20,867 + MPMX19_00016 0.28 -1.2
20,867 + MPMX19_00016 0.28 +0.4
20,867 + MPMX19_00016 0.28 -0.3
20,867 + MPMX19_00016 0.28 -0.8
20,867 + MPMX19_00016 0.28 -1.1
20,867 + MPMX19_00016 0.28 +0.2
20,867 + MPMX19_00016 0.28 -1.3
20,867 + MPMX19_00016 0.28 -1.2
20,867 + MPMX19_00016 0.28 -0.6
20,867 + MPMX19_00016 0.28 -1.2
20,867 + MPMX19_00016 0.28 -1.0
20,867 + MPMX19_00016 0.28 +0.0
20,867 + MPMX19_00016 0.28 -0.3
20,867 + MPMX19_00016 0.28 -0.4
20,867 + MPMX19_00016 0.28 -1.3
20,867 + MPMX19_00016 0.28 -1.3
20,867 + MPMX19_00016 0.28 +0.2
20,868 - MPMX19_00016 0.28 +2.0
20,868 - MPMX19_00016 0.28 +0.4
20,868 - MPMX19_00016 0.28 +1.2
20,868 - MPMX19_00016 0.28 -1.1
20,868 - MPMX19_00016 0.28 +0.3
20,868 - MPMX19_00016 0.28 -1.3
20,868 - MPMX19_00016 0.28 -1.8
20,868 - MPMX19_00016 0.28 +0.4
20,868 - MPMX19_00016 0.28 +1.3
20,868 - MPMX19_00016 0.28 -0.0
20,868 - MPMX19_00016 0.28 +0.6
20,868 - MPMX19_00016 0.28 -0.1
20,868 - MPMX19_00016 0.28 -0.4
20,868 - MPMX19_00016 0.28 -0.8
20,868 - MPMX19_00016 0.28 -0.9
20,868 - MPMX19_00016 0.28 -0.1
21,047 + MPMX19_00016 0.39 -0.8
21,047 + MPMX19_00016 0.39 -0.7
21,047 + MPMX19_00016 0.39 -2.2
21,047 + MPMX19_00016 0.39 -0.0
21,047 + MPMX19_00016 0.39 -2.2
21,048 - MPMX19_00016 0.39 -1.1
21,048 - MPMX19_00016 0.39 -0.0
21,048 - MPMX19_00016 0.39 +0.1
21,082 + MPMX19_00016 0.41 +1.6
21,083 - MPMX19_00016 0.41 -1.8
21,149 + MPMX19_00016 0.46 -1.0
21,149 + MPMX19_00016 0.46 +0.7
21,149 + MPMX19_00016 0.46 -1.8
21,149 + MPMX19_00016 0.46 -0.3
21,149 + MPMX19_00016 0.46 +0.3
21,149 + MPMX19_00016 0.46 -1.7
21,149 + MPMX19_00016 0.46 -0.9
21,150 - MPMX19_00016 0.46 +0.2
21,150 - MPMX19_00016 0.46 -1.1
21,150 - MPMX19_00016 0.46 -2.0
21,150 - MPMX19_00016 0.46 +0.3
21,150 - MPMX19_00016 0.46 -0.6
21,150 - MPMX19_00016 0.46 +0.2
21,191 + MPMX19_00016 0.48 +0.7
21,192 - MPMX19_00016 0.48 -1.6
21,192 - MPMX19_00016 0.48 -0.7

Or see this region's nucleotide sequence