Strain Fitness in Escherichia coli ECOR27 around NOLOHH_20905

Experiment: RB49

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmnmA and hflD are separated by 35 nucleotideshflD and purB are separated by 3 nucleotides NOLOHH_20900: mnmA - tRNA 2-thiouridine(34) synthase MnmA, at 4,110,187 to 4,111,293 mnmA NOLOHH_20905: hflD - high frequency lysogenization protein HflD, at 4,111,329 to 4,111,970 hflD NOLOHH_20910: purB - adenylosuccinate lyase, at 4,111,974 to 4,113,344 purB Position (kb) 4111 4112Strain fitness (log2 ratio) -1 0 1at 4111.295 kb on + strandat 4111.304 kb on + strandat 4111.736 kb on + strand, within hflDat 4111.740 kb on + strand, within hflDat 4111.740 kb on + strand, within hflDat 4111.740 kb on + strand, within hflD

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Per-strain Table

Position Strand Gene LocusTag Fraction RB49
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4,111,295 + +0.1
4,111,304 + +1.6
4,111,736 + hflD NOLOHH_20905 0.63 +0.6
4,111,740 + hflD NOLOHH_20905 0.64 -0.4
4,111,740 + hflD NOLOHH_20905 0.64 -0.9
4,111,740 + hflD NOLOHH_20905 0.64 +0.2

Or see this region's nucleotide sequence