Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18265

Experiment: RB49

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntclcB and dmsD are separated by 194 nucleotidesdmsD and NOLOHH_18265 are separated by 42 nucleotidesNOLOHH_18265 and dmsB are separated by 1 nucleotidesdmsB and bisC are separated by 10 nucleotides NOLOHH_18255: clcB - voltage-gated ClC-type chloride channel ClcB, at 3,586,470 to 3,587,726 clcB NOLOHH_18260: dmsD - Tat proofreading chaperone DmsD, at 3,587,921 to 3,588,535 dmsD NOLOHH_18265: NOLOHH_18265 - dimethylsulfoxide reductase, at 3,588,578 to 3,589,432 _18265 NOLOHH_18270: dmsB - dimethylsulfoxide reductase subunit B, at 3,589,434 to 3,590,051 dmsB NOLOHH_18275: bisC - Anaerobic selenocysteine-containing dehydrogenase, at 3,590,062 to 3,592,458 bisC Position (kb) 3588 3589 3590Strain fitness (log2 ratio) -1 0 1 2at 3587.622 kb on - strandat 3587.727 kb on - strandat 3588.619 kb on - strandat 3588.663 kb on - strandat 3588.674 kb on - strand, within NOLOHH_18265at 3588.674 kb on - strand, within NOLOHH_18265at 3588.674 kb on - strand, within NOLOHH_18265at 3589.080 kb on - strand, within NOLOHH_18265at 3589.374 kb on - strandat 3589.374 kb on - strandat 3590.182 kb on - strandat 3590.233 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB49
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3,587,622 - +1.1
3,587,727 - +0.5
3,588,619 - -0.5
3,588,663 - +0.5
3,588,674 - NOLOHH_18265 0.11 -0.2
3,588,674 - NOLOHH_18265 0.11 +0.9
3,588,674 - NOLOHH_18265 0.11 +0.5
3,589,080 - NOLOHH_18265 0.59 +1.1
3,589,374 - -0.1
3,589,374 - +2.1
3,590,182 - +0.5
3,590,233 - +0.5

Or see this region's nucleotide sequence