Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17485

Experiment: RB49

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntchbC and chbA are separated by 50 nucleotideschbA and chbR are separated by 10 nucleotideschbR and celF are separated by 104 nucleotides NOLOHH_17480: chbC - PTS N,N'-diacetylchitobiose transporter subunit IIC, at 3,430,712 to 3,432,070 chbC NOLOHH_17485: chbA - PTS N,N'-diacetylchitobiose transporter subunit IIA, at 3,432,121 to 3,432,471 chbA NOLOHH_17490: chbR - transcriptional regulator ChbR, at 3,432,482 to 3,433,321 chbR NOLOHH_17495: celF - 6-phospho-beta-glucosidase, at 3,433,426 to 3,434,778 celF Position (kb) 3432 3433Strain fitness (log2 ratio) -1 0 1at 3431.765 kb on - strand, within chbCat 3431.802 kb on + strand, within chbCat 3431.841 kb on - strand, within chbCat 3431.973 kb on + strandat 3431.978 kb on + strandat 3432.120 kb on + strandat 3432.120 kb on + strandat 3432.401 kb on + strand, within chbAat 3433.387 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB49
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3,431,765 - chbC NOLOHH_17480 0.77 +0.9
3,431,802 + chbC NOLOHH_17480 0.80 -0.4
3,431,841 - chbC NOLOHH_17480 0.83 -0.0
3,431,973 + -0.3
3,431,978 + +1.7
3,432,120 + +0.6
3,432,120 + -1.0
3,432,401 + chbA NOLOHH_17485 0.80 -1.0
3,433,387 + +0.5

Or see this region's nucleotide sequence