Experiment: RB49
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mnmG and rsmG are separated by 63 nucleotides rsmG and atpI are separated by 616 nucleotides
NOLOHH_06920: mnmG - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 1,308,990 to 1,310,879
mnmG
NOLOHH_06925: rsmG - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 1,310,943 to 1,311,566
rsmG
NOLOHH_06930: atpI - F0F1 ATP synthase subunit I, at 1,312,183 to 1,312,563
atpI
Position (kb) 1310
1311
1312 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1309.970 kb on + strand, within mnmG at 1310.022 kb on + strand, within mnmG at 1310.072 kb on + strand, within mnmG at 1310.215 kb on - strand, within mnmG at 1310.215 kb on - strand, within mnmG at 1310.224 kb on + strand, within mnmG at 1310.270 kb on + strand, within mnmG at 1310.276 kb on + strand, within mnmG at 1310.277 kb on - strand, within mnmG at 1310.627 kb on + strand, within mnmG at 1310.640 kb on + strand, within mnmG at 1310.640 kb on + strand, within mnmG at 1310.640 kb on + strand, within mnmG at 1310.642 kb on + strand, within mnmG at 1310.739 kb on - strand at 1310.760 kb on - strand at 1310.858 kb on + strand at 1310.858 kb on + strand at 1310.885 kb on + strand at 1310.885 kb on + strand at 1310.935 kb on + strand at 1310.936 kb on - strand at 1310.936 kb on - strand at 1310.936 kb on - strand at 1310.962 kb on + strand at 1310.963 kb on - strand at 1310.981 kb on + strand at 1310.981 kb on + strand at 1310.981 kb on + strand at 1310.981 kb on + strand at 1310.982 kb on - strand at 1310.982 kb on - strand at 1310.982 kb on - strand at 1311.014 kb on + strand, within rsmG at 1311.014 kb on + strand, within rsmG at 1311.014 kb on + strand, within rsmG at 1311.015 kb on - strand, within rsmG at 1311.021 kb on + strand, within rsmG at 1311.029 kb on + strand, within rsmG at 1311.038 kb on + strand, within rsmG at 1311.038 kb on + strand, within rsmG at 1311.038 kb on + strand, within rsmG at 1311.038 kb on + strand, within rsmG at 1311.039 kb on - strand, within rsmG at 1311.039 kb on - strand, within rsmG at 1311.039 kb on - strand, within rsmG at 1311.055 kb on - strand, within rsmG at 1311.055 kb on - strand, within rsmG at 1311.080 kb on + strand, within rsmG at 1311.080 kb on + strand, within rsmG at 1311.095 kb on - strand, within rsmG at 1311.129 kb on + strand, within rsmG at 1311.129 kb on + strand, within rsmG at 1311.130 kb on - strand, within rsmG at 1311.194 kb on + strand, within rsmG at 1311.195 kb on - strand, within rsmG at 1311.195 kb on - strand, within rsmG at 1311.195 kb on - strand, within rsmG at 1311.195 kb on - strand, within rsmG at 1311.313 kb on + strand, within rsmG at 1311.314 kb on - strand, within rsmG at 1311.349 kb on + strand, within rsmG at 1311.350 kb on - strand, within rsmG at 1311.350 kb on - strand, within rsmG at 1311.354 kb on - strand, within rsmG at 1311.480 kb on + strand, within rsmG at 1311.481 kb on - strand, within rsmG at 1311.481 kb on - strand, within rsmG at 1311.481 kb on - strand, within rsmG at 1311.602 kb on - strand at 1311.610 kb on - strand at 1311.636 kb on + strand at 1311.636 kb on + strand at 1311.683 kb on + strand at 1311.702 kb on - strand at 1311.852 kb on + strand at 1311.852 kb on + strand at 1311.852 kb on + strand at 1311.852 kb on + strand at 1311.853 kb on - strand at 1311.857 kb on - strand at 1311.861 kb on + strand at 1311.861 kb on + strand at 1311.893 kb on + strand at 1311.894 kb on - strand at 1311.894 kb on - strand at 1311.894 kb on - strand at 1311.894 kb on - strand at 1311.894 kb on - strand at 1311.894 kb on - strand at 1311.894 kb on - strand at 1311.894 kb on - strand at 1311.897 kb on + strand at 1311.897 kb on + strand at 1311.897 kb on + strand at 1311.898 kb on - strand at 1311.898 kb on - strand at 1311.898 kb on - strand at 1311.898 kb on - strand at 1311.921 kb on + strand at 1311.921 kb on + strand at 1311.921 kb on + strand at 1311.921 kb on + strand at 1311.922 kb on - strand at 1311.962 kb on + strand at 1311.967 kb on - strand at 1311.992 kb on + strand at 1311.993 kb on - strand at 1312.013 kb on - strand at 1312.117 kb on + strand at 1312.117 kb on + strand at 1312.238 kb on + strand, within atpI at 1312.250 kb on + strand, within atpI at 1312.304 kb on + strand, within atpI at 1312.304 kb on + strand, within atpI at 1312.344 kb on + strand, within atpI at 1312.349 kb on + strand, within atpI at 1312.349 kb on + strand, within atpI at 1312.374 kb on + strand, within atpI at 1312.374 kb on + strand, within atpI at 1312.374 kb on + strand, within atpI at 1312.500 kb on + strand, within atpI at 1312.500 kb on + strand, within atpI at 1312.500 kb on + strand, within atpI at 1312.529 kb on + strand at 1312.529 kb on + strand at 1312.529 kb on + strand at 1312.544 kb on + strand at 1312.544 kb on + strand at 1312.548 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB49 remove 1,309,970 + mnmG NOLOHH_06920 0.52 +1.0 1,310,022 + mnmG NOLOHH_06920 0.55 +1.0 1,310,072 + mnmG NOLOHH_06920 0.57 -0.0 1,310,215 - mnmG NOLOHH_06920 0.65 +1.0 1,310,215 - mnmG NOLOHH_06920 0.65 +1.0 1,310,224 + mnmG NOLOHH_06920 0.65 +1.0 1,310,270 + mnmG NOLOHH_06920 0.68 -0.6 1,310,276 + mnmG NOLOHH_06920 0.68 -0.6 1,310,277 - mnmG NOLOHH_06920 0.68 +1.0 1,310,627 + mnmG NOLOHH_06920 0.87 -0.0 1,310,640 + mnmG NOLOHH_06920 0.87 -0.0 1,310,640 + mnmG NOLOHH_06920 0.87 -1.3 1,310,640 + mnmG NOLOHH_06920 0.87 +1.0 1,310,642 + mnmG NOLOHH_06920 0.87 -0.6 1,310,739 - -1.3 1,310,760 - +1.0 1,310,858 + -0.2 1,310,858 + -0.6 1,310,885 + +2.3 1,310,885 + -0.8 1,310,935 + +0.4 1,310,936 - -1.9 1,310,936 - -0.4 1,310,936 - +0.2 1,310,962 + -2.3 1,310,963 - +0.5 1,310,981 + -0.5 1,310,981 + +1.0 1,310,981 + -0.3 1,310,981 + +1.6 1,310,982 - -1.3 1,310,982 - -1.7 1,310,982 - -0.0 1,311,014 + rsmG NOLOHH_06925 0.11 -1.3 1,311,014 + rsmG NOLOHH_06925 0.11 -0.9 1,311,014 + rsmG NOLOHH_06925 0.11 -0.9 1,311,015 - rsmG NOLOHH_06925 0.12 -1.3 1,311,021 + rsmG NOLOHH_06925 0.12 +0.6 1,311,029 + rsmG NOLOHH_06925 0.14 -0.1 1,311,038 + rsmG NOLOHH_06925 0.15 +0.2 1,311,038 + rsmG NOLOHH_06925 0.15 -0.6 1,311,038 + rsmG NOLOHH_06925 0.15 -2.3 1,311,038 + rsmG NOLOHH_06925 0.15 +0.5 1,311,039 - rsmG NOLOHH_06925 0.15 -1.5 1,311,039 - rsmG NOLOHH_06925 0.15 -0.3 1,311,039 - rsmG NOLOHH_06925 0.15 +0.5 1,311,055 - rsmG NOLOHH_06925 0.18 -1.3 1,311,055 - rsmG NOLOHH_06925 0.18 -0.0 1,311,080 + rsmG NOLOHH_06925 0.22 -0.7 1,311,080 + rsmG NOLOHH_06925 0.22 +0.2 1,311,095 - rsmG NOLOHH_06925 0.24 -0.7 1,311,129 + rsmG NOLOHH_06925 0.30 -0.0 1,311,129 + rsmG NOLOHH_06925 0.30 -1.4 1,311,130 - rsmG NOLOHH_06925 0.30 -0.5 1,311,194 + rsmG NOLOHH_06925 0.40 +3.3 1,311,195 - rsmG NOLOHH_06925 0.40 +0.3 1,311,195 - rsmG NOLOHH_06925 0.40 -3.2 1,311,195 - rsmG NOLOHH_06925 0.40 +1.0 1,311,195 - rsmG NOLOHH_06925 0.40 -1.2 1,311,313 + rsmG NOLOHH_06925 0.59 +0.1 1,311,314 - rsmG NOLOHH_06925 0.59 +2.3 1,311,349 + rsmG NOLOHH_06925 0.65 -0.3 1,311,350 - rsmG NOLOHH_06925 0.65 -0.2 1,311,350 - rsmG NOLOHH_06925 0.65 -1.4 1,311,354 - rsmG NOLOHH_06925 0.66 -0.2 1,311,480 + rsmG NOLOHH_06925 0.86 -0.0 1,311,481 - rsmG NOLOHH_06925 0.86 +1.0 1,311,481 - rsmG NOLOHH_06925 0.86 +1.0 1,311,481 - rsmG NOLOHH_06925 0.86 -0.8 1,311,602 - +1.0 1,311,610 - -0.2 1,311,636 + +1.0 1,311,636 + -1.8 1,311,683 + +0.4 1,311,702 - +1.6 1,311,852 + +0.6 1,311,852 + -0.9 1,311,852 + -0.3 1,311,852 + -0.0 1,311,853 - -0.7 1,311,857 - +0.5 1,311,861 + -0.3 1,311,861 + +0.5 1,311,893 + -0.1 1,311,894 - -1.6 1,311,894 - -0.6 1,311,894 - -0.0 1,311,894 - +1.6 1,311,894 - +0.4 1,311,894 - -0.1 1,311,894 - -0.3 1,311,894 - -0.5 1,311,897 + -0.3 1,311,897 + -0.6 1,311,897 + -2.0 1,311,898 - +0.2 1,311,898 - -0.4 1,311,898 - -1.0 1,311,898 - +0.6 1,311,921 + -0.0 1,311,921 + +0.2 1,311,921 + +2.0 1,311,921 + -0.8 1,311,922 - +0.7 1,311,962 + +0.2 1,311,967 - -0.2 1,311,992 + -0.6 1,311,993 - -2.0 1,312,013 - -0.5 1,312,117 + -2.2 1,312,117 + +0.8 1,312,238 + atpI NOLOHH_06930 0.14 -0.0 1,312,250 + atpI NOLOHH_06930 0.18 +0.1 1,312,304 + atpI NOLOHH_06930 0.32 +2.0 1,312,304 + atpI NOLOHH_06930 0.32 -0.6 1,312,344 + atpI NOLOHH_06930 0.42 +1.0 1,312,349 + atpI NOLOHH_06930 0.44 -0.2 1,312,349 + atpI NOLOHH_06930 0.44 +0.1 1,312,374 + atpI NOLOHH_06930 0.50 -0.6 1,312,374 + atpI NOLOHH_06930 0.50 +1.0 1,312,374 + atpI NOLOHH_06930 0.50 +0.2 1,312,500 + atpI NOLOHH_06930 0.83 +1.0 1,312,500 + atpI NOLOHH_06930 0.83 +2.6 1,312,500 + atpI NOLOHH_06930 0.83 +1.0 1,312,529 + -1.2 1,312,529 + -0.8 1,312,529 + +0.6 1,312,544 + -0.3 1,312,544 + +3.0 1,312,548 + -0.0
Or see this region's nucleotide sequence