Experiment: RB49
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt frdB and NOLOHH_04615 are separated by 10 nucleotides NOLOHH_04615 and frdD are separated by 10 nucleotides frdD and blaEC are separated by 62 nucleotides blaEC and blc are separated by 88 nucleotides blc and sugE overlap by 4 nucleotides
NOLOHH_04610: frdB - fumarate reductase iron-sulfur protein, at 837,824 to 838,558
frdB
NOLOHH_04615: NOLOHH_04615 - Fumarate reductase subunit C, at 838,569 to 838,964
_04615
NOLOHH_04620: frdD - fumarate reductase subunit FrdD, at 838,975 to 839,334
frdD
NOLOHH_04625: blaEC - BlaEC family class C beta-lactamase, at 839,397 to 840,530
blaEC
NOLOHH_04630: blc - lipocalin Blc, at 840,619 to 841,152
blc
NOLOHH_04635: sugE - quaternary ammonium compound efflux SMR transporter SugE, at 841,149 to 841,466
sugE
Position (kb) 839
840
841 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 838.400 kb on - strand, within frdB at 838.400 kb on - strand, within frdB at 838.439 kb on - strand, within frdB at 838.451 kb on + strand, within frdB at 838.584 kb on - strand at 838.590 kb on + strand at 838.590 kb on + strand at 838.590 kb on + strand at 838.590 kb on + strand at 838.590 kb on + strand at 838.591 kb on - strand at 838.594 kb on + strand at 838.594 kb on + strand at 838.595 kb on - strand at 838.595 kb on - strand at 838.595 kb on - strand at 838.645 kb on - strand, within NOLOHH_04615 at 838.645 kb on - strand, within NOLOHH_04615 at 838.856 kb on + strand, within NOLOHH_04615 at 838.856 kb on + strand, within NOLOHH_04615 at 838.864 kb on + strand, within NOLOHH_04615 at 838.864 kb on + strand, within NOLOHH_04615 at 838.957 kb on - strand at 839.040 kb on + strand, within frdD at 839.041 kb on - strand, within frdD at 839.056 kb on - strand, within frdD at 839.129 kb on - strand, within frdD at 839.129 kb on - strand, within frdD at 839.221 kb on - strand, within frdD at 839.326 kb on - strand at 839.332 kb on + strand at 839.332 kb on + strand at 839.332 kb on + strand at 839.332 kb on + strand at 839.333 kb on - strand at 839.333 kb on - strand at 839.333 kb on - strand at 839.396 kb on + strand at 839.396 kb on + strand at 839.396 kb on + strand at 839.396 kb on + strand at 839.396 kb on + strand at 839.396 kb on + strand at 839.397 kb on - strand at 839.397 kb on - strand at 839.397 kb on - strand at 839.397 kb on - strand at 839.397 kb on - strand at 839.397 kb on - strand at 839.425 kb on + strand at 839.425 kb on + strand at 839.426 kb on - strand at 839.429 kb on + strand at 839.429 kb on + strand at 839.502 kb on - strand at 839.504 kb on - strand at 839.552 kb on + strand, within blaEC at 839.552 kb on + strand, within blaEC at 839.559 kb on + strand, within blaEC at 839.559 kb on + strand, within blaEC at 839.560 kb on - strand, within blaEC at 839.562 kb on + strand, within blaEC at 839.562 kb on + strand, within blaEC at 839.562 kb on + strand, within blaEC at 839.562 kb on + strand, within blaEC at 839.563 kb on - strand, within blaEC at 839.563 kb on - strand, within blaEC at 839.563 kb on - strand, within blaEC at 839.629 kb on + strand, within blaEC at 839.629 kb on + strand, within blaEC at 839.630 kb on - strand, within blaEC at 839.630 kb on - strand, within blaEC at 839.698 kb on + strand, within blaEC at 839.732 kb on + strand, within blaEC at 839.761 kb on + strand, within blaEC at 839.761 kb on + strand, within blaEC at 839.761 kb on + strand, within blaEC at 839.761 kb on + strand, within blaEC at 839.762 kb on - strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.765 kb on - strand, within blaEC at 839.765 kb on - strand, within blaEC at 839.765 kb on - strand, within blaEC at 839.765 kb on - strand, within blaEC at 839.765 kb on - strand, within blaEC at 839.765 kb on - strand, within blaEC at 839.778 kb on + strand, within blaEC at 839.778 kb on + strand, within blaEC at 839.778 kb on + strand, within blaEC at 839.779 kb on - strand, within blaEC at 839.865 kb on - strand, within blaEC at 839.865 kb on - strand, within blaEC at 839.892 kb on + strand, within blaEC at 839.893 kb on - strand, within blaEC at 840.002 kb on + strand, within blaEC at 840.002 kb on + strand, within blaEC at 840.002 kb on + strand, within blaEC at 840.002 kb on + strand, within blaEC at 840.002 kb on + strand, within blaEC at 840.002 kb on + strand, within blaEC at 840.002 kb on + strand, within blaEC at 840.003 kb on - strand, within blaEC at 840.003 kb on - strand, within blaEC at 840.003 kb on - strand, within blaEC at 840.012 kb on - strand, within blaEC at 840.012 kb on - strand, within blaEC at 840.017 kb on - strand, within blaEC at 840.039 kb on + strand, within blaEC at 840.039 kb on + strand, within blaEC at 840.092 kb on - strand, within blaEC at 840.105 kb on + strand, within blaEC at 840.155 kb on + strand, within blaEC at 840.240 kb on + strand, within blaEC at 840.337 kb on + strand, within blaEC at 840.368 kb on - strand, within blaEC at 840.386 kb on + strand, within blaEC at 840.386 kb on + strand, within blaEC at 840.386 kb on + strand, within blaEC at 840.386 kb on + strand, within blaEC at 840.386 kb on + strand, within blaEC at 840.387 kb on - strand, within blaEC at 840.387 kb on - strand, within blaEC at 840.387 kb on - strand, within blaEC at 840.417 kb on + strand at 840.417 kb on + strand at 840.417 kb on + strand at 840.417 kb on + strand at 840.417 kb on + strand at 840.417 kb on + strand at 840.417 kb on + strand at 840.417 kb on + strand at 840.417 kb on + strand at 840.418 kb on - strand at 840.418 kb on - strand at 840.418 kb on - strand at 840.418 kb on - strand at 840.418 kb on - strand at 840.418 kb on - strand at 840.418 kb on - strand at 840.418 kb on - strand at 840.418 kb on - strand at 840.428 kb on + strand at 840.449 kb on + strand at 840.451 kb on + strand at 840.451 kb on + strand at 840.451 kb on + strand at 840.452 kb on - strand at 840.528 kb on + strand at 840.587 kb on - strand at 840.587 kb on - strand at 840.618 kb on + strand at 840.707 kb on + strand, within blc at 840.748 kb on + strand, within blc at 840.748 kb on + strand, within blc at 840.808 kb on + strand, within blc at 840.808 kb on + strand, within blc at 840.808 kb on + strand, within blc at 840.808 kb on + strand, within blc at 840.809 kb on - strand, within blc at 840.809 kb on - strand, within blc at 840.843 kb on + strand, within blc at 840.853 kb on + strand, within blc at 840.853 kb on + strand, within blc at 840.853 kb on + strand, within blc at 840.854 kb on - strand, within blc at 840.854 kb on - strand, within blc at 840.855 kb on + strand, within blc at 840.966 kb on + strand, within blc at 841.027 kb on + strand, within blc at 841.027 kb on + strand, within blc at 841.120 kb on - strand at 841.125 kb on + strand at 841.125 kb on + strand at 841.150 kb on + strand at 841.150 kb on + strand at 841.275 kb on - strand, within sugE at 841.291 kb on + strand, within sugE at 841.333 kb on - strand, within sugE at 841.333 kb on - strand, within sugE at 841.333 kb on - strand, within sugE at 841.367 kb on + strand, within sugE at 841.400 kb on + strand, within sugE at 841.401 kb on - strand, within sugE at 841.402 kb on + strand, within sugE at 841.402 kb on + strand, within sugE at 841.403 kb on - strand, within sugE at 841.403 kb on - strand, within sugE at 841.403 kb on - strand, within sugE at 841.403 kb on - strand, within sugE at 841.403 kb on - strand, within sugE at 841.403 kb on - strand, within sugE at 841.403 kb on - strand, within sugE at 841.403 kb on - strand, within sugE at 841.423 kb on - strand, within sugE at 841.445 kb on + strand at 841.446 kb on - strand at 841.449 kb on + strand at 841.449 kb on + strand at 841.449 kb on + strand at 841.449 kb on + strand at 841.449 kb on + strand at 841.450 kb on - strand at 841.450 kb on - strand at 841.450 kb on - strand at 841.450 kb on - strand at 841.450 kb on - strand at 841.450 kb on - strand at 841.455 kb on - strand at 841.466 kb on + strand at 841.466 kb on + strand at 841.467 kb on - strand at 841.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB49 remove 838,400 - frdB NOLOHH_04610 0.78 -0.4 838,400 - frdB NOLOHH_04610 0.78 +0.4 838,439 - frdB NOLOHH_04610 0.84 +0.3 838,451 + frdB NOLOHH_04610 0.85 +0.6 838,584 - +0.6 838,590 + -0.4 838,590 + -1.5 838,590 + +0.3 838,590 + -1.0 838,590 + +0.6 838,591 - +1.0 838,594 + +0.5 838,594 + -1.5 838,595 - -0.2 838,595 - -0.7 838,595 - -1.5 838,645 - NOLOHH_04615 0.19 +0.2 838,645 - NOLOHH_04615 0.19 -0.0 838,856 + NOLOHH_04615 0.72 -3.0 838,856 + NOLOHH_04615 0.72 +1.6 838,864 + NOLOHH_04615 0.74 -0.2 838,864 + NOLOHH_04615 0.74 -0.1 838,957 - +0.5 839,040 + frdD NOLOHH_04620 0.18 -0.6 839,041 - frdD NOLOHH_04620 0.18 -1.2 839,056 - frdD NOLOHH_04620 0.23 +0.0 839,129 - frdD NOLOHH_04620 0.43 +0.5 839,129 - frdD NOLOHH_04620 0.43 -1.3 839,221 - frdD NOLOHH_04620 0.68 +0.0 839,326 - +0.8 839,332 + -0.5 839,332 + +0.4 839,332 + +0.3 839,332 + +0.5 839,333 - +0.2 839,333 - -0.2 839,333 - +1.4 839,396 + -0.2 839,396 + +0.8 839,396 + -0.6 839,396 + +0.3 839,396 + -0.2 839,396 + +1.8 839,397 - +0.1 839,397 - -0.4 839,397 - -1.2 839,397 - +0.3 839,397 - -0.3 839,397 - -1.2 839,425 + +0.2 839,425 + +3.2 839,426 - +0.8 839,429 + -0.2 839,429 + +0.2 839,502 - -0.3 839,504 - -0.0 839,552 + blaEC NOLOHH_04625 0.14 -1.9 839,552 + blaEC NOLOHH_04625 0.14 -1.0 839,559 + blaEC NOLOHH_04625 0.14 -0.9 839,559 + blaEC NOLOHH_04625 0.14 +0.4 839,560 - blaEC NOLOHH_04625 0.14 -0.7 839,562 + blaEC NOLOHH_04625 0.15 -2.0 839,562 + blaEC NOLOHH_04625 0.15 +0.8 839,562 + blaEC NOLOHH_04625 0.15 -0.5 839,562 + blaEC NOLOHH_04625 0.15 -0.7 839,563 - blaEC NOLOHH_04625 0.15 -0.3 839,563 - blaEC NOLOHH_04625 0.15 +0.6 839,563 - blaEC NOLOHH_04625 0.15 +0.4 839,629 + blaEC NOLOHH_04625 0.20 +0.1 839,629 + blaEC NOLOHH_04625 0.20 -0.7 839,630 - blaEC NOLOHH_04625 0.21 +0.0 839,630 - blaEC NOLOHH_04625 0.21 -0.7 839,698 + blaEC NOLOHH_04625 0.27 +0.8 839,732 + blaEC NOLOHH_04625 0.30 +0.7 839,761 + blaEC NOLOHH_04625 0.32 -1.2 839,761 + blaEC NOLOHH_04625 0.32 -0.2 839,761 + blaEC NOLOHH_04625 0.32 -0.2 839,761 + blaEC NOLOHH_04625 0.32 -0.0 839,762 - blaEC NOLOHH_04625 0.32 -0.2 839,764 + blaEC NOLOHH_04625 0.32 +1.4 839,764 + blaEC NOLOHH_04625 0.32 +0.5 839,764 + blaEC NOLOHH_04625 0.32 +0.0 839,764 + blaEC NOLOHH_04625 0.32 -0.2 839,764 + blaEC NOLOHH_04625 0.32 +1.3 839,764 + blaEC NOLOHH_04625 0.32 -0.2 839,764 + blaEC NOLOHH_04625 0.32 -2.2 839,764 + blaEC NOLOHH_04625 0.32 +0.1 839,764 + blaEC NOLOHH_04625 0.32 +0.0 839,765 - blaEC NOLOHH_04625 0.32 -0.3 839,765 - blaEC NOLOHH_04625 0.32 -0.6 839,765 - blaEC NOLOHH_04625 0.32 -1.2 839,765 - blaEC NOLOHH_04625 0.32 +0.8 839,765 - blaEC NOLOHH_04625 0.32 -0.2 839,765 - blaEC NOLOHH_04625 0.32 +0.8 839,778 + blaEC NOLOHH_04625 0.34 +0.2 839,778 + blaEC NOLOHH_04625 0.34 +2.4 839,778 + blaEC NOLOHH_04625 0.34 -0.7 839,779 - blaEC NOLOHH_04625 0.34 +0.1 839,865 - blaEC NOLOHH_04625 0.41 +0.1 839,865 - blaEC NOLOHH_04625 0.41 +0.6 839,892 + blaEC NOLOHH_04625 0.44 -1.0 839,893 - blaEC NOLOHH_04625 0.44 +0.8 840,002 + blaEC NOLOHH_04625 0.53 -0.0 840,002 + blaEC NOLOHH_04625 0.53 +1.1 840,002 + blaEC NOLOHH_04625 0.53 +0.3 840,002 + blaEC NOLOHH_04625 0.53 -0.4 840,002 + blaEC NOLOHH_04625 0.53 -0.0 840,002 + blaEC NOLOHH_04625 0.53 -0.7 840,002 + blaEC NOLOHH_04625 0.53 +1.2 840,003 - blaEC NOLOHH_04625 0.53 +0.1 840,003 - blaEC NOLOHH_04625 0.53 -0.4 840,003 - blaEC NOLOHH_04625 0.53 -1.0 840,012 - blaEC NOLOHH_04625 0.54 -1.3 840,012 - blaEC NOLOHH_04625 0.54 +0.8 840,017 - blaEC NOLOHH_04625 0.55 -0.9 840,039 + blaEC NOLOHH_04625 0.57 +1.4 840,039 + blaEC NOLOHH_04625 0.57 -0.2 840,092 - blaEC NOLOHH_04625 0.61 +0.3 840,105 + blaEC NOLOHH_04625 0.62 -0.6 840,155 + blaEC NOLOHH_04625 0.67 -0.6 840,240 + blaEC NOLOHH_04625 0.74 -0.5 840,337 + blaEC NOLOHH_04625 0.83 -0.4 840,368 - blaEC NOLOHH_04625 0.86 -2.0 840,386 + blaEC NOLOHH_04625 0.87 +1.1 840,386 + blaEC NOLOHH_04625 0.87 +0.6 840,386 + blaEC NOLOHH_04625 0.87 -2.0 840,386 + blaEC NOLOHH_04625 0.87 -0.3 840,386 + blaEC NOLOHH_04625 0.87 -0.2 840,387 - blaEC NOLOHH_04625 0.87 -0.5 840,387 - blaEC NOLOHH_04625 0.87 -0.3 840,387 - blaEC NOLOHH_04625 0.87 -0.3 840,417 + +0.4 840,417 + -0.3 840,417 + +1.6 840,417 + -1.0 840,417 + +0.4 840,417 + +0.7 840,417 + -2.9 840,417 + +0.1 840,417 + -0.2 840,418 - -0.3 840,418 - -1.2 840,418 - -0.2 840,418 - -0.5 840,418 - +1.8 840,418 - +1.1 840,418 - +0.3 840,418 - -0.7 840,418 - +1.2 840,428 + +0.5 840,449 + -1.2 840,451 + +0.4 840,451 + -0.0 840,451 + -0.5 840,452 - -1.2 840,528 + -0.6 840,587 - -0.6 840,587 - -0.2 840,618 + -0.4 840,707 + blc NOLOHH_04630 0.16 -0.2 840,748 + blc NOLOHH_04630 0.24 -2.5 840,748 + blc NOLOHH_04630 0.24 -0.5 840,808 + blc NOLOHH_04630 0.35 +0.4 840,808 + blc NOLOHH_04630 0.35 -0.3 840,808 + blc NOLOHH_04630 0.35 -2.2 840,808 + blc NOLOHH_04630 0.35 -0.7 840,809 - blc NOLOHH_04630 0.36 -1.5 840,809 - blc NOLOHH_04630 0.36 -0.2 840,843 + blc NOLOHH_04630 0.42 +0.3 840,853 + blc NOLOHH_04630 0.44 -0.4 840,853 + blc NOLOHH_04630 0.44 +0.0 840,853 + blc NOLOHH_04630 0.44 -0.9 840,854 - blc NOLOHH_04630 0.44 +0.5 840,854 - blc NOLOHH_04630 0.44 +0.7 840,855 + blc NOLOHH_04630 0.44 -0.0 840,966 + blc NOLOHH_04630 0.65 -0.7 841,027 + blc NOLOHH_04630 0.76 +0.7 841,027 + blc NOLOHH_04630 0.76 +0.5 841,120 - -0.5 841,125 + +0.3 841,125 + -0.2 841,150 + +0.6 841,150 + +0.6 841,275 - sugE NOLOHH_04635 0.40 -0.9 841,291 + sugE NOLOHH_04635 0.45 -1.2 841,333 - sugE NOLOHH_04635 0.58 -1.1 841,333 - sugE NOLOHH_04635 0.58 -1.7 841,333 - sugE NOLOHH_04635 0.58 +0.8 841,367 + sugE NOLOHH_04635 0.69 -0.0 841,400 + sugE NOLOHH_04635 0.79 +0.5 841,401 - sugE NOLOHH_04635 0.79 +0.8 841,402 + sugE NOLOHH_04635 0.80 +1.1 841,402 + sugE NOLOHH_04635 0.80 +0.1 841,403 - sugE NOLOHH_04635 0.80 -0.3 841,403 - sugE NOLOHH_04635 0.80 -0.0 841,403 - sugE NOLOHH_04635 0.80 +0.7 841,403 - sugE NOLOHH_04635 0.80 -0.5 841,403 - sugE NOLOHH_04635 0.80 +0.6 841,403 - sugE NOLOHH_04635 0.80 -0.9 841,403 - sugE NOLOHH_04635 0.80 +1.6 841,403 - sugE NOLOHH_04635 0.80 -0.3 841,423 - sugE NOLOHH_04635 0.86 +0.5 841,445 + +1.0 841,446 - -1.2 841,449 + -0.7 841,449 + +1.8 841,449 + -0.6 841,449 + +0.5 841,449 + -0.2 841,450 - +1.0 841,450 - +0.1 841,450 - -0.7 841,450 - -0.0 841,450 - +0.3 841,450 - +0.8 841,455 - +0.3 841,466 + +0.1 841,466 + -1.1 841,467 - -0.5 841,467 - -0.1
Or see this region's nucleotide sequence