Experiment: RB49
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hpaG and hpaE overlap by 4 nucleotides hpaE and hpaD are separated by 1 nucleotides hpaD and hpaF are separated by 9 nucleotides
NOLOHH_03715: hpaG - 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, at 660,327 to 661,616
hpaG
NOLOHH_03720: hpaE - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, at 661,613 to 663,079
hpaE
NOLOHH_03725: hpaD - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 663,081 to 663,932
hpaD
NOLOHH_03730: hpaF - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 663,942 to 664,322
hpaF
Position (kb) 661
662
663
664 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 660.633 kb on + strand, within hpaG at 660.634 kb on - strand, within hpaG at 660.723 kb on + strand, within hpaG at 660.723 kb on + strand, within hpaG at 660.723 kb on + strand, within hpaG at 660.723 kb on + strand, within hpaG at 660.723 kb on + strand, within hpaG at 660.723 kb on + strand, within hpaG at 660.723 kb on + strand, within hpaG at 660.724 kb on - strand, within hpaG at 660.724 kb on - strand, within hpaG at 660.724 kb on - strand, within hpaG at 660.724 kb on - strand, within hpaG at 660.724 kb on - strand, within hpaG at 660.724 kb on - strand, within hpaG at 660.724 kb on - strand, within hpaG at 660.724 kb on - strand, within hpaG at 660.773 kb on - strand, within hpaG at 660.780 kb on - strand, within hpaG at 660.874 kb on + strand, within hpaG at 660.875 kb on - strand, within hpaG at 661.020 kb on + strand, within hpaG at 661.021 kb on - strand, within hpaG at 661.021 kb on - strand, within hpaG at 661.091 kb on + strand, within hpaG at 661.140 kb on + strand, within hpaG at 661.140 kb on + strand, within hpaG at 661.140 kb on + strand, within hpaG at 661.140 kb on + strand, within hpaG at 661.140 kb on + strand, within hpaG at 661.141 kb on - strand, within hpaG at 661.141 kb on - strand, within hpaG at 661.141 kb on - strand, within hpaG at 661.141 kb on - strand, within hpaG at 661.141 kb on - strand, within hpaG at 661.141 kb on - strand, within hpaG at 661.141 kb on - strand, within hpaG at 661.141 kb on - strand, within hpaG at 661.149 kb on + strand, within hpaG at 661.149 kb on + strand, within hpaG at 661.149 kb on + strand, within hpaG at 661.149 kb on + strand, within hpaG at 661.168 kb on + strand, within hpaG at 661.168 kb on + strand, within hpaG at 661.168 kb on + strand, within hpaG at 661.169 kb on - strand, within hpaG at 661.169 kb on - strand, within hpaG at 661.169 kb on - strand, within hpaG at 661.218 kb on + strand, within hpaG at 661.218 kb on + strand, within hpaG at 661.219 kb on - strand, within hpaG at 661.275 kb on + strand, within hpaG at 661.276 kb on - strand, within hpaG at 661.278 kb on + strand, within hpaG at 661.367 kb on + strand, within hpaG at 661.402 kb on + strand, within hpaG at 661.462 kb on + strand, within hpaG at 661.462 kb on + strand, within hpaG at 661.463 kb on - strand, within hpaG at 661.463 kb on - strand, within hpaG at 661.472 kb on + strand, within hpaG at 661.472 kb on + strand, within hpaG at 661.522 kb on + strand at 661.676 kb on - strand at 661.979 kb on + strand, within hpaE at 662.006 kb on + strand, within hpaE at 662.007 kb on - strand, within hpaE at 662.211 kb on + strand, within hpaE at 662.262 kb on + strand, within hpaE at 662.262 kb on + strand, within hpaE at 662.262 kb on + strand, within hpaE at 662.262 kb on + strand, within hpaE at 662.262 kb on + strand, within hpaE at 662.262 kb on + strand, within hpaE at 662.262 kb on + strand, within hpaE at 662.262 kb on + strand, within hpaE at 662.262 kb on + strand, within hpaE at 662.263 kb on - strand, within hpaE at 662.263 kb on - strand, within hpaE at 662.484 kb on - strand, within hpaE at 662.572 kb on + strand, within hpaE at 662.573 kb on - strand, within hpaE at 662.573 kb on - strand, within hpaE at 662.606 kb on + strand, within hpaE at 662.606 kb on + strand, within hpaE at 662.606 kb on + strand, within hpaE at 662.606 kb on + strand, within hpaE at 662.607 kb on - strand, within hpaE at 662.607 kb on - strand, within hpaE at 662.737 kb on + strand, within hpaE at 662.738 kb on - strand, within hpaE at 662.811 kb on + strand, within hpaE at 662.811 kb on + strand, within hpaE at 662.811 kb on + strand, within hpaE at 662.812 kb on - strand, within hpaE at 662.812 kb on - strand, within hpaE at 662.849 kb on + strand, within hpaE at 662.850 kb on - strand, within hpaE at 662.850 kb on - strand, within hpaE at 662.850 kb on - strand, within hpaE at 662.850 kb on - strand, within hpaE at 662.880 kb on + strand, within hpaE at 662.999 kb on + strand at 663.000 kb on - strand at 663.086 kb on + strand at 663.086 kb on + strand at 663.086 kb on + strand at 663.086 kb on + strand at 663.087 kb on - strand at 663.092 kb on - strand at 663.129 kb on + strand at 663.130 kb on - strand at 663.270 kb on + strand, within hpaD at 663.270 kb on + strand, within hpaD at 663.306 kb on + strand, within hpaD at 663.307 kb on - strand, within hpaD at 663.307 kb on - strand, within hpaD at 663.307 kb on - strand, within hpaD at 663.348 kb on + strand, within hpaD at 663.348 kb on + strand, within hpaD at 663.349 kb on - strand, within hpaD at 663.349 kb on - strand, within hpaD at 663.349 kb on - strand, within hpaD at 663.354 kb on + strand, within hpaD at 663.354 kb on + strand, within hpaD at 663.355 kb on - strand, within hpaD at 663.355 kb on - strand, within hpaD at 663.383 kb on + strand, within hpaD at 663.383 kb on + strand, within hpaD at 663.591 kb on + strand, within hpaD at 663.591 kb on + strand, within hpaD at 663.641 kb on + strand, within hpaD at 663.642 kb on - strand, within hpaD at 663.678 kb on + strand, within hpaD at 663.679 kb on - strand, within hpaD at 663.758 kb on + strand, within hpaD at 663.758 kb on + strand, within hpaD at 663.758 kb on + strand, within hpaD at 663.759 kb on - strand, within hpaD at 663.759 kb on - strand, within hpaD at 663.759 kb on - strand, within hpaD at 663.772 kb on - strand, within hpaD at 663.781 kb on - strand, within hpaD at 663.781 kb on - strand, within hpaD at 663.786 kb on + strand, within hpaD at 663.800 kb on + strand, within hpaD at 663.801 kb on - strand, within hpaD at 663.846 kb on + strand, within hpaD at 663.846 kb on + strand, within hpaD at 663.847 kb on - strand at 663.847 kb on - strand at 663.847 kb on - strand at 663.847 kb on - strand at 663.847 kb on - strand at 663.867 kb on - strand at 663.965 kb on + strand at 663.966 kb on - strand at 663.975 kb on - strand at 663.994 kb on + strand, within hpaF at 664.016 kb on + strand, within hpaF at 664.016 kb on + strand, within hpaF at 664.060 kb on + strand, within hpaF at 664.060 kb on + strand, within hpaF at 664.060 kb on + strand, within hpaF at 664.060 kb on + strand, within hpaF at 664.061 kb on - strand, within hpaF at 664.061 kb on - strand, within hpaF at 664.061 kb on - strand, within hpaF at 664.064 kb on + strand, within hpaF at 664.064 kb on + strand, within hpaF
Per-strain Table
Position Strand Gene LocusTag Fraction RB49 remove 660,633 + hpaG NOLOHH_03715 0.24 -1.2 660,634 - hpaG NOLOHH_03715 0.24 -0.2 660,723 + hpaG NOLOHH_03715 0.31 +0.3 660,723 + hpaG NOLOHH_03715 0.31 -0.2 660,723 + hpaG NOLOHH_03715 0.31 -1.0 660,723 + hpaG NOLOHH_03715 0.31 -0.8 660,723 + hpaG NOLOHH_03715 0.31 +1.6 660,723 + hpaG NOLOHH_03715 0.31 +1.1 660,723 + hpaG NOLOHH_03715 0.31 +1.0 660,724 - hpaG NOLOHH_03715 0.31 -0.7 660,724 - hpaG NOLOHH_03715 0.31 -0.8 660,724 - hpaG NOLOHH_03715 0.31 +0.8 660,724 - hpaG NOLOHH_03715 0.31 -1.0 660,724 - hpaG NOLOHH_03715 0.31 -2.1 660,724 - hpaG NOLOHH_03715 0.31 +1.0 660,724 - hpaG NOLOHH_03715 0.31 -0.6 660,724 - hpaG NOLOHH_03715 0.31 +0.5 660,773 - hpaG NOLOHH_03715 0.35 -0.5 660,780 - hpaG NOLOHH_03715 0.35 +0.4 660,874 + hpaG NOLOHH_03715 0.42 -0.2 660,875 - hpaG NOLOHH_03715 0.42 -0.2 661,020 + hpaG NOLOHH_03715 0.54 +0.2 661,021 - hpaG NOLOHH_03715 0.54 -0.1 661,021 - hpaG NOLOHH_03715 0.54 -0.1 661,091 + hpaG NOLOHH_03715 0.59 -0.0 661,140 + hpaG NOLOHH_03715 0.63 -1.5 661,140 + hpaG NOLOHH_03715 0.63 -1.1 661,140 + hpaG NOLOHH_03715 0.63 +0.3 661,140 + hpaG NOLOHH_03715 0.63 +0.8 661,140 + hpaG NOLOHH_03715 0.63 -2.1 661,141 - hpaG NOLOHH_03715 0.63 +1.4 661,141 - hpaG NOLOHH_03715 0.63 +0.1 661,141 - hpaG NOLOHH_03715 0.63 +1.8 661,141 - hpaG NOLOHH_03715 0.63 +0.4 661,141 - hpaG NOLOHH_03715 0.63 +0.5 661,141 - hpaG NOLOHH_03715 0.63 +0.0 661,141 - hpaG NOLOHH_03715 0.63 +1.4 661,141 - hpaG NOLOHH_03715 0.63 -1.7 661,149 + hpaG NOLOHH_03715 0.64 +1.8 661,149 + hpaG NOLOHH_03715 0.64 +0.4 661,149 + hpaG NOLOHH_03715 0.64 +0.3 661,149 + hpaG NOLOHH_03715 0.64 +0.1 661,168 + hpaG NOLOHH_03715 0.65 -0.4 661,168 + hpaG NOLOHH_03715 0.65 -0.8 661,168 + hpaG NOLOHH_03715 0.65 -1.2 661,169 - hpaG NOLOHH_03715 0.65 +2.1 661,169 - hpaG NOLOHH_03715 0.65 +0.6 661,169 - hpaG NOLOHH_03715 0.65 +0.1 661,218 + hpaG NOLOHH_03715 0.69 -1.1 661,218 + hpaG NOLOHH_03715 0.69 -0.1 661,219 - hpaG NOLOHH_03715 0.69 -0.7 661,275 + hpaG NOLOHH_03715 0.73 +2.0 661,276 - hpaG NOLOHH_03715 0.74 -0.6 661,278 + hpaG NOLOHH_03715 0.74 -0.4 661,367 + hpaG NOLOHH_03715 0.81 +0.2 661,402 + hpaG NOLOHH_03715 0.83 +0.2 661,462 + hpaG NOLOHH_03715 0.88 -0.6 661,462 + hpaG NOLOHH_03715 0.88 -0.5 661,463 - hpaG NOLOHH_03715 0.88 -0.2 661,463 - hpaG NOLOHH_03715 0.88 +1.5 661,472 + hpaG NOLOHH_03715 0.89 +1.2 661,472 + hpaG NOLOHH_03715 0.89 -0.5 661,522 + -1.0 661,676 - +1.0 661,979 + hpaE NOLOHH_03720 0.25 -0.6 662,006 + hpaE NOLOHH_03720 0.27 -1.0 662,007 - hpaE NOLOHH_03720 0.27 +0.3 662,211 + hpaE NOLOHH_03720 0.41 +0.6 662,262 + hpaE NOLOHH_03720 0.44 -0.8 662,262 + hpaE NOLOHH_03720 0.44 -0.1 662,262 + hpaE NOLOHH_03720 0.44 -0.2 662,262 + hpaE NOLOHH_03720 0.44 -0.4 662,262 + hpaE NOLOHH_03720 0.44 -0.9 662,262 + hpaE NOLOHH_03720 0.44 -1.1 662,262 + hpaE NOLOHH_03720 0.44 +0.1 662,262 + hpaE NOLOHH_03720 0.44 +0.5 662,262 + hpaE NOLOHH_03720 0.44 +0.1 662,263 - hpaE NOLOHH_03720 0.44 +1.8 662,263 - hpaE NOLOHH_03720 0.44 +0.8 662,484 - hpaE NOLOHH_03720 0.59 +0.6 662,572 + hpaE NOLOHH_03720 0.65 +0.6 662,573 - hpaE NOLOHH_03720 0.65 +0.3 662,573 - hpaE NOLOHH_03720 0.65 +0.3 662,606 + hpaE NOLOHH_03720 0.68 +1.2 662,606 + hpaE NOLOHH_03720 0.68 +1.4 662,606 + hpaE NOLOHH_03720 0.68 -1.5 662,606 + hpaE NOLOHH_03720 0.68 -0.4 662,607 - hpaE NOLOHH_03720 0.68 -0.4 662,607 - hpaE NOLOHH_03720 0.68 -1.5 662,737 + hpaE NOLOHH_03720 0.77 +0.1 662,738 - hpaE NOLOHH_03720 0.77 -0.0 662,811 + hpaE NOLOHH_03720 0.82 +1.2 662,811 + hpaE NOLOHH_03720 0.82 -0.8 662,811 + hpaE NOLOHH_03720 0.82 +0.5 662,812 - hpaE NOLOHH_03720 0.82 +0.5 662,812 - hpaE NOLOHH_03720 0.82 +1.2 662,849 + hpaE NOLOHH_03720 0.84 +0.0 662,850 - hpaE NOLOHH_03720 0.84 -0.3 662,850 - hpaE NOLOHH_03720 0.84 +0.5 662,850 - hpaE NOLOHH_03720 0.84 -0.1 662,850 - hpaE NOLOHH_03720 0.84 -0.0 662,880 + hpaE NOLOHH_03720 0.86 -0.2 662,999 + -0.6 663,000 - -0.0 663,086 + +0.2 663,086 + +0.6 663,086 + +0.8 663,086 + -0.7 663,087 - -0.7 663,092 - -1.0 663,129 + -0.3 663,130 - -2.0 663,270 + hpaD NOLOHH_03725 0.22 -0.8 663,270 + hpaD NOLOHH_03725 0.22 -0.2 663,306 + hpaD NOLOHH_03725 0.26 -0.8 663,307 - hpaD NOLOHH_03725 0.27 +0.6 663,307 - hpaD NOLOHH_03725 0.27 -0.2 663,307 - hpaD NOLOHH_03725 0.27 -0.2 663,348 + hpaD NOLOHH_03725 0.31 -0.4 663,348 + hpaD NOLOHH_03725 0.31 -0.2 663,349 - hpaD NOLOHH_03725 0.31 -0.4 663,349 - hpaD NOLOHH_03725 0.31 -0.5 663,349 - hpaD NOLOHH_03725 0.31 -0.9 663,354 + hpaD NOLOHH_03725 0.32 +1.1 663,354 + hpaD NOLOHH_03725 0.32 +0.6 663,355 - hpaD NOLOHH_03725 0.32 +0.3 663,355 - hpaD NOLOHH_03725 0.32 -1.0 663,383 + hpaD NOLOHH_03725 0.35 +1.2 663,383 + hpaD NOLOHH_03725 0.35 -1.4 663,591 + hpaD NOLOHH_03725 0.60 +0.2 663,591 + hpaD NOLOHH_03725 0.60 +0.6 663,641 + hpaD NOLOHH_03725 0.66 +0.0 663,642 - hpaD NOLOHH_03725 0.66 -0.1 663,678 + hpaD NOLOHH_03725 0.70 +1.6 663,679 - hpaD NOLOHH_03725 0.70 +2.2 663,758 + hpaD NOLOHH_03725 0.79 +0.6 663,758 + hpaD NOLOHH_03725 0.79 +0.8 663,758 + hpaD NOLOHH_03725 0.79 -0.4 663,759 - hpaD NOLOHH_03725 0.80 -0.8 663,759 - hpaD NOLOHH_03725 0.80 -0.5 663,759 - hpaD NOLOHH_03725 0.80 -0.3 663,772 - hpaD NOLOHH_03725 0.81 -1.1 663,781 - hpaD NOLOHH_03725 0.82 -0.7 663,781 - hpaD NOLOHH_03725 0.82 +0.6 663,786 + hpaD NOLOHH_03725 0.83 +0.6 663,800 + hpaD NOLOHH_03725 0.84 +0.5 663,801 - hpaD NOLOHH_03725 0.85 +2.8 663,846 + hpaD NOLOHH_03725 0.90 -0.5 663,846 + hpaD NOLOHH_03725 0.90 +0.8 663,847 - -0.0 663,847 - -1.5 663,847 - +0.3 663,847 - -0.0 663,847 - +0.0 663,867 - +0.8 663,965 + +0.5 663,966 - -0.7 663,975 - -0.9 663,994 + hpaF NOLOHH_03730 0.14 -0.1 664,016 + hpaF NOLOHH_03730 0.19 -0.3 664,016 + hpaF NOLOHH_03730 0.19 +0.2 664,060 + hpaF NOLOHH_03730 0.31 +0.8 664,060 + hpaF NOLOHH_03730 0.31 +0.5 664,060 + hpaF NOLOHH_03730 0.31 -0.6 664,060 + hpaF NOLOHH_03730 0.31 +0.5 664,061 - hpaF NOLOHH_03730 0.31 +0.4 664,061 - hpaF NOLOHH_03730 0.31 -0.2 664,061 - hpaF NOLOHH_03730 0.31 +0.5 664,064 + hpaF NOLOHH_03730 0.32 -1.1 664,064 + hpaF NOLOHH_03730 0.32 -2.0
Or see this region's nucleotide sequence