Experiment: RB49
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt paoA and paoB overlap by 4 nucleotides paoB and paoC overlap by 4 nucleotides paoC and paoD are separated by 9 nucleotides paoD and yagP overlap by 22 nucleotides
NOLOHH_02015: paoA - aldehyde dehydrogenase iron-sulfur subunit, at 310,860 to 311,549
paoA
NOLOHH_02020: paoB - aldehyde oxidoreductase FAD-binding subunit PaoB, at 311,546 to 312,502
paoB
NOLOHH_02025: paoC - aldehyde oxidoreductase molybdenum-binding subunit PaoC, at 312,499 to 314,697
paoC
NOLOHH_02030: paoD - molybdenum cofactor insertion chaperone PaoD, at 314,707 to 315,663
paoD
NOLOHH_02035: yagP - Putative LysR family substrate binding domain-containing protein YagP, at 315,642 to 316,052
yagP
Position (kb) 312
313
314
315 Strain fitness (log2 ratio) -2
-1
0
1
2 at 311.501 kb on + strand at 311.539 kb on + strand at 311.557 kb on + strand at 311.557 kb on + strand at 311.558 kb on - strand at 311.561 kb on + strand at 311.562 kb on - strand at 311.597 kb on - strand at 311.807 kb on + strand, within paoB at 311.853 kb on + strand, within paoB at 311.853 kb on + strand, within paoB at 311.854 kb on - strand, within paoB at 311.858 kb on - strand, within paoB at 311.879 kb on - strand, within paoB at 311.879 kb on - strand, within paoB at 311.936 kb on - strand, within paoB at 311.998 kb on - strand, within paoB at 312.003 kb on + strand, within paoB at 312.003 kb on + strand, within paoB at 312.004 kb on - strand, within paoB at 312.004 kb on - strand, within paoB at 312.019 kb on - strand, within paoB at 312.037 kb on + strand, within paoB at 312.125 kb on + strand, within paoB at 312.181 kb on + strand, within paoB at 312.223 kb on + strand, within paoB at 312.223 kb on + strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.224 kb on - strand, within paoB at 312.228 kb on - strand, within paoB at 312.255 kb on - strand, within paoB at 312.287 kb on - strand, within paoB at 312.328 kb on - strand, within paoB at 312.328 kb on - strand, within paoB at 312.334 kb on + strand, within paoB at 312.334 kb on + strand, within paoB at 312.334 kb on + strand, within paoB at 312.334 kb on + strand, within paoB at 312.335 kb on - strand, within paoB at 312.335 kb on - strand, within paoB at 312.335 kb on - strand, within paoB at 312.391 kb on - strand, within paoB at 312.391 kb on - strand, within paoB at 312.392 kb on + strand, within paoB at 312.393 kb on - strand, within paoB at 312.393 kb on - strand, within paoB at 312.439 kb on + strand at 312.439 kb on + strand at 312.652 kb on + strand at 312.652 kb on + strand at 312.652 kb on + strand at 312.652 kb on + strand at 312.653 kb on - strand at 312.653 kb on - strand at 312.654 kb on + strand at 312.655 kb on - strand at 312.729 kb on - strand, within paoC at 312.821 kb on - strand, within paoC at 312.821 kb on - strand, within paoC at 312.906 kb on + strand, within paoC at 312.910 kb on - strand, within paoC at 312.920 kb on - strand, within paoC at 313.032 kb on + strand, within paoC at 313.032 kb on + strand, within paoC at 313.036 kb on + strand, within paoC at 313.036 kb on + strand, within paoC at 313.036 kb on + strand, within paoC at 313.037 kb on - strand, within paoC at 313.059 kb on + strand, within paoC at 313.060 kb on - strand, within paoC at 313.060 kb on - strand, within paoC at 313.060 kb on - strand, within paoC at 313.104 kb on + strand, within paoC at 313.104 kb on + strand, within paoC at 313.104 kb on + strand, within paoC at 313.104 kb on + strand, within paoC at 313.105 kb on - strand, within paoC at 313.105 kb on - strand, within paoC at 313.105 kb on - strand, within paoC at 313.105 kb on - strand, within paoC at 313.105 kb on - strand, within paoC at 313.195 kb on - strand, within paoC at 313.197 kb on + strand, within paoC at 313.198 kb on - strand, within paoC at 313.198 kb on - strand, within paoC at 313.198 kb on - strand, within paoC at 313.207 kb on + strand, within paoC at 313.207 kb on + strand, within paoC at 313.208 kb on - strand, within paoC at 313.208 kb on - strand, within paoC at 313.320 kb on + strand, within paoC at 313.472 kb on + strand, within paoC at 313.472 kb on + strand, within paoC at 313.473 kb on - strand, within paoC at 313.821 kb on + strand, within paoC at 313.881 kb on - strand, within paoC at 313.915 kb on + strand, within paoC at 313.916 kb on - strand, within paoC at 313.916 kb on - strand, within paoC at 314.037 kb on + strand, within paoC at 314.056 kb on + strand, within paoC at 314.143 kb on - strand, within paoC at 314.168 kb on + strand, within paoC at 314.169 kb on - strand, within paoC at 314.286 kb on + strand, within paoC at 314.316 kb on + strand, within paoC at 314.447 kb on - strand, within paoC at 314.473 kb on + strand, within paoC at 314.617 kb on + strand at 314.617 kb on + strand at 314.617 kb on + strand at 314.617 kb on + strand at 314.618 kb on - strand at 314.618 kb on - strand at 314.745 kb on + strand at 314.802 kb on - strand at 315.072 kb on + strand, within paoD at 315.073 kb on - strand, within paoD at 315.077 kb on + strand, within paoD at 315.077 kb on + strand, within paoD at 315.078 kb on - strand, within paoD at 315.078 kb on - strand, within paoD at 315.253 kb on + strand, within paoD at 315.253 kb on + strand, within paoD at 315.307 kb on + strand, within paoD at 315.318 kb on + strand, within paoD at 315.319 kb on - strand, within paoD at 315.482 kb on + strand, within paoD at 315.483 kb on - strand, within paoD at 315.483 kb on - strand, within paoD at 315.483 kb on - strand, within paoD at 315.554 kb on + strand, within paoD at 315.580 kb on - strand at 315.617 kb on + strand at 315.618 kb on - strand at 315.618 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB49 remove 311,501 + +0.2 311,539 + +1.3 311,557 + -1.6 311,557 + +0.2 311,558 - -1.3 311,561 + +0.1 311,562 - +1.5 311,597 - -0.4 311,807 + paoB NOLOHH_02020 0.27 -1.3 311,853 + paoB NOLOHH_02020 0.32 -0.1 311,853 + paoB NOLOHH_02020 0.32 -1.6 311,854 - paoB NOLOHH_02020 0.32 -1.4 311,858 - paoB NOLOHH_02020 0.33 -0.3 311,879 - paoB NOLOHH_02020 0.35 -0.8 311,879 - paoB NOLOHH_02020 0.35 +0.7 311,936 - paoB NOLOHH_02020 0.41 -1.4 311,998 - paoB NOLOHH_02020 0.47 +1.7 312,003 + paoB NOLOHH_02020 0.48 -0.5 312,003 + paoB NOLOHH_02020 0.48 +0.9 312,004 - paoB NOLOHH_02020 0.48 +1.2 312,004 - paoB NOLOHH_02020 0.48 +0.2 312,019 - paoB NOLOHH_02020 0.49 -2.3 312,037 + paoB NOLOHH_02020 0.51 +0.5 312,125 + paoB NOLOHH_02020 0.61 -0.8 312,181 + paoB NOLOHH_02020 0.66 -0.3 312,223 + paoB NOLOHH_02020 0.71 +0.2 312,223 + paoB NOLOHH_02020 0.71 +1.1 312,224 - paoB NOLOHH_02020 0.71 +0.2 312,224 - paoB NOLOHH_02020 0.71 +1.3 312,224 - paoB NOLOHH_02020 0.71 +0.9 312,224 - paoB NOLOHH_02020 0.71 -1.0 312,224 - paoB NOLOHH_02020 0.71 -0.3 312,224 - paoB NOLOHH_02020 0.71 -0.5 312,224 - paoB NOLOHH_02020 0.71 -0.8 312,224 - paoB NOLOHH_02020 0.71 -0.4 312,224 - paoB NOLOHH_02020 0.71 -0.4 312,224 - paoB NOLOHH_02020 0.71 +1.7 312,224 - paoB NOLOHH_02020 0.71 -0.8 312,228 - paoB NOLOHH_02020 0.71 +0.6 312,255 - paoB NOLOHH_02020 0.74 -0.4 312,287 - paoB NOLOHH_02020 0.77 -0.3 312,328 - paoB NOLOHH_02020 0.82 -0.6 312,328 - paoB NOLOHH_02020 0.82 +0.7 312,334 + paoB NOLOHH_02020 0.82 +0.4 312,334 + paoB NOLOHH_02020 0.82 -1.2 312,334 + paoB NOLOHH_02020 0.82 +1.0 312,334 + paoB NOLOHH_02020 0.82 +0.0 312,335 - paoB NOLOHH_02020 0.82 +0.0 312,335 - paoB NOLOHH_02020 0.82 +0.6 312,335 - paoB NOLOHH_02020 0.82 -0.2 312,391 - paoB NOLOHH_02020 0.88 -0.1 312,391 - paoB NOLOHH_02020 0.88 -0.4 312,392 + paoB NOLOHH_02020 0.88 +0.7 312,393 - paoB NOLOHH_02020 0.89 -1.3 312,393 - paoB NOLOHH_02020 0.89 +1.2 312,439 + +0.7 312,439 + +0.7 312,652 + -1.3 312,652 + +0.7 312,652 + +0.5 312,652 + -1.0 312,653 - +1.3 312,653 - +1.3 312,654 + +1.1 312,655 - +2.7 312,729 - paoC NOLOHH_02025 0.10 -0.8 312,821 - paoC NOLOHH_02025 0.15 +0.4 312,821 - paoC NOLOHH_02025 0.15 -0.6 312,906 + paoC NOLOHH_02025 0.19 -1.7 312,910 - paoC NOLOHH_02025 0.19 -0.8 312,920 - paoC NOLOHH_02025 0.19 +1.2 313,032 + paoC NOLOHH_02025 0.24 -0.1 313,032 + paoC NOLOHH_02025 0.24 -0.1 313,036 + paoC NOLOHH_02025 0.24 -2.1 313,036 + paoC NOLOHH_02025 0.24 +0.2 313,036 + paoC NOLOHH_02025 0.24 +0.1 313,037 - paoC NOLOHH_02025 0.24 -0.3 313,059 + paoC NOLOHH_02025 0.25 -0.7 313,060 - paoC NOLOHH_02025 0.26 -1.1 313,060 - paoC NOLOHH_02025 0.26 +1.1 313,060 - paoC NOLOHH_02025 0.26 -1.1 313,104 + paoC NOLOHH_02025 0.28 -0.3 313,104 + paoC NOLOHH_02025 0.28 +1.6 313,104 + paoC NOLOHH_02025 0.28 -0.5 313,104 + paoC NOLOHH_02025 0.28 +0.2 313,105 - paoC NOLOHH_02025 0.28 +0.2 313,105 - paoC NOLOHH_02025 0.28 -1.0 313,105 - paoC NOLOHH_02025 0.28 +1.7 313,105 - paoC NOLOHH_02025 0.28 -1.0 313,105 - paoC NOLOHH_02025 0.28 +2.5 313,195 - paoC NOLOHH_02025 0.32 -0.8 313,197 + paoC NOLOHH_02025 0.32 -0.5 313,198 - paoC NOLOHH_02025 0.32 +1.3 313,198 - paoC NOLOHH_02025 0.32 +1.1 313,198 - paoC NOLOHH_02025 0.32 -0.3 313,207 + paoC NOLOHH_02025 0.32 +0.2 313,207 + paoC NOLOHH_02025 0.32 +0.0 313,208 - paoC NOLOHH_02025 0.32 -0.8 313,208 - paoC NOLOHH_02025 0.32 -0.3 313,320 + paoC NOLOHH_02025 0.37 -0.8 313,472 + paoC NOLOHH_02025 0.44 -1.0 313,472 + paoC NOLOHH_02025 0.44 -0.5 313,473 - paoC NOLOHH_02025 0.44 +0.3 313,821 + paoC NOLOHH_02025 0.60 +0.7 313,881 - paoC NOLOHH_02025 0.63 +1.3 313,915 + paoC NOLOHH_02025 0.64 +0.7 313,916 - paoC NOLOHH_02025 0.64 -0.3 313,916 - paoC NOLOHH_02025 0.64 +1.9 314,037 + paoC NOLOHH_02025 0.70 -2.4 314,056 + paoC NOLOHH_02025 0.71 +2.1 314,143 - paoC NOLOHH_02025 0.75 +0.0 314,168 + paoC NOLOHH_02025 0.76 -0.3 314,169 - paoC NOLOHH_02025 0.76 -1.3 314,286 + paoC NOLOHH_02025 0.81 -0.8 314,316 + paoC NOLOHH_02025 0.83 +1.7 314,447 - paoC NOLOHH_02025 0.89 +0.2 314,473 + paoC NOLOHH_02025 0.90 -0.4 314,617 + +0.4 314,617 + -0.1 314,617 + +0.4 314,617 + -0.6 314,618 - +0.3 314,618 - +0.7 314,745 + +0.7 314,802 - +0.6 315,072 + paoD NOLOHH_02030 0.38 -1.8 315,073 - paoD NOLOHH_02030 0.38 -1.6 315,077 + paoD NOLOHH_02030 0.39 +0.4 315,077 + paoD NOLOHH_02030 0.39 -0.1 315,078 - paoD NOLOHH_02030 0.39 +0.0 315,078 - paoD NOLOHH_02030 0.39 +2.3 315,253 + paoD NOLOHH_02030 0.57 -0.3 315,253 + paoD NOLOHH_02030 0.57 -0.3 315,307 + paoD NOLOHH_02030 0.63 +0.4 315,318 + paoD NOLOHH_02030 0.64 -1.6 315,319 - paoD NOLOHH_02030 0.64 +2.0 315,482 + paoD NOLOHH_02030 0.81 +2.2 315,483 - paoD NOLOHH_02030 0.81 +0.5 315,483 - paoD NOLOHH_02030 0.81 +0.2 315,483 - paoD NOLOHH_02030 0.81 -1.3 315,554 + paoD NOLOHH_02030 0.89 -1.3 315,580 - +0.4 315,617 + -0.3 315,618 - +0.1 315,618 - +0.1
Or see this region's nucleotide sequence