Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_13055

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntgldG and OKGIIK_13055 are separated by 3 nucleotidesOKGIIK_13055 and mutM are separated by 5 nucleotides OKGIIK_13050: gldG - ABC transporter, at 2,816,321 to 2,817,676 gldG OKGIIK_13055: OKGIIK_13055 - hypothetical protein, at 2,817,680 to 2,818,171 _13055 OKGIIK_13060: mutM - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 2,818,177 to 2,819,004 mutM Position (kb) 2817 2818 2819Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2816.832 kb on - strand, within gldGat 2816.978 kb on + strand, within gldGat 2816.978 kb on + strand, within gldGat 2816.979 kb on - strand, within gldGat 2816.979 kb on - strand, within gldGat 2817.150 kb on - strand, within gldGat 2817.324 kb on - strand, within gldGat 2817.324 kb on - strand, within gldGat 2817.857 kb on + strand, within OKGIIK_13055at 2817.857 kb on + strand, within OKGIIK_13055at 2817.857 kb on + strand, within OKGIIK_13055at 2817.857 kb on + strand, within OKGIIK_13055at 2817.858 kb on - strand, within OKGIIK_13055at 2817.858 kb on - strand, within OKGIIK_13055at 2817.858 kb on - strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.085 kb on + strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.086 kb on - strand, within OKGIIK_13055at 2818.127 kb on + strandat 2818.127 kb on + strandat 2818.127 kb on + strandat 2818.128 kb on - strandat 2818.128 kb on - strandat 2818.128 kb on - strandat 2818.128 kb on - strandat 2818.128 kb on - strandat 2818.128 kb on - strandat 2818.225 kb on + strandat 2818.225 kb on + strandat 2818.226 kb on - strandat 2818.226 kb on - strandat 2818.226 kb on - strandat 2818.226 kb on - strandat 2818.226 kb on - strandat 2818.226 kb on - strandat 2818.226 kb on - strandat 2818.351 kb on + strand, within mutMat 2818.351 kb on + strand, within mutMat 2818.351 kb on + strand, within mutMat 2818.352 kb on - strand, within mutMat 2818.352 kb on - strand, within mutMat 2818.352 kb on - strand, within mutMat 2818.361 kb on + strand, within mutMat 2818.361 kb on + strand, within mutMat 2818.361 kb on + strand, within mutMat 2818.361 kb on + strand, within mutMat 2818.361 kb on + strand, within mutMat 2818.361 kb on + strand, within mutMat 2818.361 kb on + strand, within mutMat 2818.361 kb on + strand, within mutMat 2818.362 kb on - strand, within mutMat 2818.362 kb on - strand, within mutMat 2818.362 kb on - strand, within mutMat 2818.705 kb on + strand, within mutMat 2818.705 kb on + strand, within mutMat 2818.705 kb on + strand, within mutMat 2818.705 kb on + strand, within mutMat 2818.705 kb on + strand, within mutMat 2818.706 kb on - strand, within mutMat 2818.706 kb on - strand, within mutMat 2818.706 kb on - strand, within mutMat 2818.706 kb on - strand, within mutMat 2818.778 kb on - strand, within mutMat 2818.778 kb on - strand, within mutMat 2818.879 kb on + strand, within mutMat 2818.879 kb on + strand, within mutMat 2818.879 kb on + strand, within mutMat 2818.879 kb on + strand, within mutMat 2818.879 kb on + strand, within mutMat 2818.879 kb on + strand, within mutMat 2818.880 kb on - strand, within mutMat 2818.880 kb on - strand, within mutMat 2818.880 kb on - strand, within mutMat 2818.903 kb on + strand, within mutMat 2818.903 kb on + strand, within mutMat 2818.903 kb on + strand, within mutMat 2818.904 kb on - strand, within mutMat 2818.904 kb on - strand, within mutMat 2819.041 kb on + strandat 2819.041 kb on + strandat 2819.041 kb on + strandat 2819.041 kb on + strandat 2819.041 kb on + strandat 2819.042 kb on - strandat 2819.042 kb on - strandat 2819.042 kb on - strandat 2819.042 kb on - strandat 2819.042 kb on - strandat 2819.042 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
2,816,832 - gldG OKGIIK_13050 0.38 -1.9
2,816,978 + gldG OKGIIK_13050 0.48 -1.8
2,816,978 + gldG OKGIIK_13050 0.48 -0.3
2,816,979 - gldG OKGIIK_13050 0.49 +0.3
2,816,979 - gldG OKGIIK_13050 0.49 +1.2
2,817,150 - gldG OKGIIK_13050 0.61 +2.2
2,817,324 - gldG OKGIIK_13050 0.74 -0.1
2,817,324 - gldG OKGIIK_13050 0.74 +0.6
2,817,857 + OKGIIK_13055 0.36 -1.4
2,817,857 + OKGIIK_13055 0.36 +0.4
2,817,857 + OKGIIK_13055 0.36 -0.0
2,817,857 + OKGIIK_13055 0.36 +1.8
2,817,858 - OKGIIK_13055 0.36 +0.2
2,817,858 - OKGIIK_13055 0.36 -0.2
2,817,858 - OKGIIK_13055 0.36 -1.1
2,818,085 + OKGIIK_13055 0.82 -0.1
2,818,085 + OKGIIK_13055 0.82 +1.2
2,818,085 + OKGIIK_13055 0.82 -2.7
2,818,085 + OKGIIK_13055 0.82 -1.5
2,818,085 + OKGIIK_13055 0.82 -0.1
2,818,085 + OKGIIK_13055 0.82 +0.5
2,818,085 + OKGIIK_13055 0.82 +0.8
2,818,085 + OKGIIK_13055 0.82 -1.7
2,818,085 + OKGIIK_13055 0.82 +1.6
2,818,085 + OKGIIK_13055 0.82 -1.3
2,818,085 + OKGIIK_13055 0.82 -0.1
2,818,085 + OKGIIK_13055 0.82 -1.0
2,818,085 + OKGIIK_13055 0.82 -0.5
2,818,085 + OKGIIK_13055 0.82 -0.6
2,818,085 + OKGIIK_13055 0.82 -1.0
2,818,085 + OKGIIK_13055 0.82 +1.2
2,818,085 + OKGIIK_13055 0.82 +1.4
2,818,085 + OKGIIK_13055 0.82 -1.0
2,818,085 + OKGIIK_13055 0.82 -0.1
2,818,085 + OKGIIK_13055 0.82 -1.2
2,818,085 + OKGIIK_13055 0.82 -1.4
2,818,085 + OKGIIK_13055 0.82 -1.1
2,818,085 + OKGIIK_13055 0.82 -1.3
2,818,085 + OKGIIK_13055 0.82 -0.6
2,818,085 + OKGIIK_13055 0.82 +0.6
2,818,085 + OKGIIK_13055 0.82 +0.7
2,818,085 + OKGIIK_13055 0.82 +0.2
2,818,085 + OKGIIK_13055 0.82 -3.1
2,818,086 - OKGIIK_13055 0.83 -0.7
2,818,086 - OKGIIK_13055 0.83 +0.6
2,818,086 - OKGIIK_13055 0.83 +0.5
2,818,086 - OKGIIK_13055 0.83 +0.5
2,818,086 - OKGIIK_13055 0.83 -0.5
2,818,086 - OKGIIK_13055 0.83 +1.6
2,818,086 - OKGIIK_13055 0.83 +0.8
2,818,086 - OKGIIK_13055 0.83 +0.4
2,818,086 - OKGIIK_13055 0.83 +0.3
2,818,086 - OKGIIK_13055 0.83 +0.2
2,818,086 - OKGIIK_13055 0.83 +0.4
2,818,086 - OKGIIK_13055 0.83 -0.5
2,818,086 - OKGIIK_13055 0.83 -0.0
2,818,086 - OKGIIK_13055 0.83 -0.4
2,818,086 - OKGIIK_13055 0.83 +0.3
2,818,086 - OKGIIK_13055 0.83 -0.3
2,818,086 - OKGIIK_13055 0.83 -1.1
2,818,086 - OKGIIK_13055 0.83 +0.4
2,818,086 - OKGIIK_13055 0.83 -0.1
2,818,086 - OKGIIK_13055 0.83 -1.3
2,818,127 + -1.1
2,818,127 + +0.1
2,818,127 + -0.1
2,818,128 - -1.4
2,818,128 - -2.8
2,818,128 - -0.1
2,818,128 - -0.0
2,818,128 - -0.1
2,818,128 - +0.6
2,818,225 + -1.1
2,818,225 + -0.6
2,818,226 - -0.8
2,818,226 - -1.6
2,818,226 - +1.1
2,818,226 - -3.0
2,818,226 - -0.1
2,818,226 - +0.4
2,818,226 - +0.6
2,818,351 + mutM OKGIIK_13060 0.21 +0.6
2,818,351 + mutM OKGIIK_13060 0.21 -1.2
2,818,351 + mutM OKGIIK_13060 0.21 +0.1
2,818,352 - mutM OKGIIK_13060 0.21 -0.3
2,818,352 - mutM OKGIIK_13060 0.21 +0.4
2,818,352 - mutM OKGIIK_13060 0.21 -0.6
2,818,361 + mutM OKGIIK_13060 0.22 +0.1
2,818,361 + mutM OKGIIK_13060 0.22 +0.6
2,818,361 + mutM OKGIIK_13060 0.22 +0.2
2,818,361 + mutM OKGIIK_13060 0.22 -0.1
2,818,361 + mutM OKGIIK_13060 0.22 -0.6
2,818,361 + mutM OKGIIK_13060 0.22 -0.1
2,818,361 + mutM OKGIIK_13060 0.22 +0.2
2,818,361 + mutM OKGIIK_13060 0.22 -0.9
2,818,362 - mutM OKGIIK_13060 0.22 -2.1
2,818,362 - mutM OKGIIK_13060 0.22 +0.8
2,818,362 - mutM OKGIIK_13060 0.22 -1.1
2,818,705 + mutM OKGIIK_13060 0.64 -0.3
2,818,705 + mutM OKGIIK_13060 0.64 -0.1
2,818,705 + mutM OKGIIK_13060 0.64 -1.3
2,818,705 + mutM OKGIIK_13060 0.64 +0.4
2,818,705 + mutM OKGIIK_13060 0.64 -1.9
2,818,706 - mutM OKGIIK_13060 0.64 -0.1
2,818,706 - mutM OKGIIK_13060 0.64 -0.4
2,818,706 - mutM OKGIIK_13060 0.64 -0.4
2,818,706 - mutM OKGIIK_13060 0.64 +0.2
2,818,778 - mutM OKGIIK_13060 0.73 +1.2
2,818,778 - mutM OKGIIK_13060 0.73 +0.9
2,818,879 + mutM OKGIIK_13060 0.85 -2.1
2,818,879 + mutM OKGIIK_13060 0.85 +1.9
2,818,879 + mutM OKGIIK_13060 0.85 +1.0
2,818,879 + mutM OKGIIK_13060 0.85 -2.0
2,818,879 + mutM OKGIIK_13060 0.85 -1.1
2,818,879 + mutM OKGIIK_13060 0.85 +0.6
2,818,880 - mutM OKGIIK_13060 0.85 -0.4
2,818,880 - mutM OKGIIK_13060 0.85 -1.3
2,818,880 - mutM OKGIIK_13060 0.85 +1.8
2,818,903 + mutM OKGIIK_13060 0.88 -0.5
2,818,903 + mutM OKGIIK_13060 0.88 +1.2
2,818,903 + mutM OKGIIK_13060 0.88 -1.1
2,818,904 - mutM OKGIIK_13060 0.88 +0.6
2,818,904 - mutM OKGIIK_13060 0.88 +0.6
2,819,041 + -2.1
2,819,041 + -1.4
2,819,041 + +1.4
2,819,041 + -1.3
2,819,041 + -1.1
2,819,042 - -1.1
2,819,042 - +0.1
2,819,042 - -1.6
2,819,042 - +0.9
2,819,042 - -1.0
2,819,042 - -1.9

Or see this region's nucleotide sequence