Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ettA and pyrF are separated by 103 nucleotides pyrF and OKGIIK_11455 are separated by 24 nucleotides OKGIIK_11455 and OKGIIK_11460 are separated by 200 nucleotides OKGIIK_11460 and def are separated by 207 nucleotides
OKGIIK_11445: ettA - energy-dependent translational throttle protein EttA, at 2,457,626 to 2,459,293
ettA
OKGIIK_11450: pyrF - orotidine-5'-phosphate decarboxylase, at 2,459,397 to 2,460,215
pyrF
OKGIIK_11455: OKGIIK_11455 - hypothetical protein, at 2,460,240 to 2,460,497
_11455
OKGIIK_11460: OKGIIK_11460 - hypothetical protein, at 2,460,698 to 2,461,072
_11460
OKGIIK_11465: def - peptide deformylase, at 2,461,280 to 2,461,816
def
Position (kb)
2460
2461 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2459.276 kb on + strand at 2459.276 kb on + strand at 2459.276 kb on + strand at 2459.277 kb on - strand at 2459.277 kb on - strand at 2459.277 kb on - strand at 2459.277 kb on - strand at 2459.292 kb on - strand at 2459.292 kb on - strand at 2459.292 kb on - strand at 2459.292 kb on - strand at 2459.307 kb on + strand at 2459.307 kb on + strand at 2459.307 kb on + strand at 2459.307 kb on + strand at 2459.307 kb on + strand at 2459.307 kb on + strand at 2459.308 kb on - strand at 2459.308 kb on - strand at 2459.308 kb on - strand at 2460.352 kb on + strand, within OKGIIK_11455 at 2460.352 kb on + strand, within OKGIIK_11455 at 2460.352 kb on + strand, within OKGIIK_11455 at 2460.352 kb on + strand, within OKGIIK_11455 at 2460.352 kb on + strand, within OKGIIK_11455 at 2460.352 kb on + strand, within OKGIIK_11455 at 2460.352 kb on + strand, within OKGIIK_11455 at 2460.352 kb on + strand, within OKGIIK_11455 at 2460.352 kb on + strand, within OKGIIK_11455 at 2460.352 kb on + strand, within OKGIIK_11455 at 2460.352 kb on + strand, within OKGIIK_11455 at 2460.352 kb on + strand, within OKGIIK_11455 at 2460.353 kb on - strand, within OKGIIK_11455 at 2460.353 kb on - strand, within OKGIIK_11455 at 2460.353 kb on - strand, within OKGIIK_11455 at 2460.353 kb on - strand, within OKGIIK_11455 at 2460.353 kb on - strand, within OKGIIK_11455 at 2460.536 kb on + strand at 2460.536 kb on + strand at 2460.536 kb on + strand at 2460.536 kb on + strand at 2460.537 kb on - strand at 2460.537 kb on - strand at 2460.537 kb on - strand at 2460.537 kb on - strand at 2460.537 kb on - strand at 2460.537 kb on - strand at 2460.717 kb on + strand at 2460.718 kb on - strand at 2460.718 kb on - strand at 2460.718 kb on - strand at 2460.718 kb on - strand at 2460.956 kb on + strand, within OKGIIK_11460 at 2460.957 kb on - strand, within OKGIIK_11460 at 2460.957 kb on - strand, within OKGIIK_11460 at 2461.359 kb on + strand, within def at 2461.359 kb on + strand, within def at 2461.359 kb on + strand, within def at 2461.359 kb on + strand, within def at 2461.360 kb on - strand, within def at 2461.476 kb on + strand, within def at 2461.476 kb on + strand, within def at 2461.477 kb on - strand, within def
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 2,459,276 + -1.4 2,459,276 + -2.4 2,459,276 + +0.3 2,459,277 - +0.3 2,459,277 - -0.9 2,459,277 - +0.3 2,459,277 - +0.5 2,459,292 - -1.4 2,459,292 - +1.1 2,459,292 - +0.0 2,459,292 - +0.3 2,459,307 + -1.0 2,459,307 + +0.3 2,459,307 + -0.7 2,459,307 + -0.1 2,459,307 + -1.1 2,459,307 + +0.0 2,459,308 - -1.7 2,459,308 - +0.2 2,459,308 - -0.7 2,460,352 + OKGIIK_11455 0.43 +0.0 2,460,352 + OKGIIK_11455 0.43 -2.0 2,460,352 + OKGIIK_11455 0.43 -1.7 2,460,352 + OKGIIK_11455 0.43 -0.2 2,460,352 + OKGIIK_11455 0.43 -0.8 2,460,352 + OKGIIK_11455 0.43 -0.8 2,460,352 + OKGIIK_11455 0.43 +1.1 2,460,352 + OKGIIK_11455 0.43 +0.0 2,460,352 + OKGIIK_11455 0.43 -0.4 2,460,352 + OKGIIK_11455 0.43 +0.2 2,460,352 + OKGIIK_11455 0.43 +0.2 2,460,352 + OKGIIK_11455 0.43 -0.2 2,460,353 - OKGIIK_11455 0.44 -1.3 2,460,353 - OKGIIK_11455 0.44 -1.7 2,460,353 - OKGIIK_11455 0.44 +0.3 2,460,353 - OKGIIK_11455 0.44 -1.0 2,460,353 - OKGIIK_11455 0.44 +1.0 2,460,536 + -1.2 2,460,536 + -0.4 2,460,536 + -0.5 2,460,536 + -2.6 2,460,537 - -2.2 2,460,537 - +1.3 2,460,537 - -1.0 2,460,537 - -1.7 2,460,537 - +2.5 2,460,537 - -0.5 2,460,717 + -2.1 2,460,718 - -1.9 2,460,718 - +0.2 2,460,718 - -0.6 2,460,718 - -1.1 2,460,956 + OKGIIK_11460 0.69 +0.8 2,460,957 - OKGIIK_11460 0.69 +0.0 2,460,957 - OKGIIK_11460 0.69 -0.7 2,461,359 + def OKGIIK_11465 0.15 -1.5 2,461,359 + def OKGIIK_11465 0.15 +0.8 2,461,359 + def OKGIIK_11465 0.15 +0.3 2,461,359 + def OKGIIK_11465 0.15 -1.4 2,461,360 - def OKGIIK_11465 0.15 -1.0 2,461,476 + def OKGIIK_11465 0.36 +0.3 2,461,476 + def OKGIIK_11465 0.36 +0.1 2,461,477 - def OKGIIK_11465 0.37 +1.8
Or see this region's nucleotide sequence