Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_08955 and OKGIIK_08960 are separated by 20 nucleotides OKGIIK_08960 and OKGIIK_08965 are separated by 350 nucleotides
OKGIIK_08955: OKGIIK_08955 - Type I restriction enzyme endonuclease subunit, at 1,922,693 to 1,926,112
_08955
OKGIIK_08960: OKGIIK_08960 - Restriction endonuclease subunit S, at 1,926,133 to 1,927,041
_08960
OKGIIK_08965: OKGIIK_08965 - Site-specific DNA-methyltransferase (adenine-specific), at 1,927,392 to 1,929,506
_08965
Position (kb)
1926
1927
1928 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1925.439 kb on + strand, within OKGIIK_08955 at 1925.440 kb on - strand, within OKGIIK_08955 at 1925.440 kb on - strand, within OKGIIK_08955 at 1925.550 kb on + strand, within OKGIIK_08955 at 1925.551 kb on - strand, within OKGIIK_08955 at 1925.551 kb on - strand, within OKGIIK_08955 at 1925.551 kb on - strand, within OKGIIK_08955 at 1925.551 kb on - strand, within OKGIIK_08955 at 1925.593 kb on - strand, within OKGIIK_08955 at 1925.664 kb on + strand, within OKGIIK_08955 at 1925.665 kb on - strand, within OKGIIK_08955 at 1925.665 kb on - strand, within OKGIIK_08955 at 1925.665 kb on - strand, within OKGIIK_08955 at 1925.665 kb on - strand, within OKGIIK_08955 at 1925.665 kb on - strand, within OKGIIK_08955 at 1925.823 kb on + strand at 1925.823 kb on + strand at 1926.024 kb on + strand at 1926.025 kb on - strand at 1926.025 kb on - strand at 1926.025 kb on - strand at 1926.136 kb on + strand at 1926.136 kb on + strand at 1926.136 kb on + strand at 1926.137 kb on - strand at 1926.137 kb on - strand at 1926.137 kb on - strand at 1926.138 kb on - strand at 1926.215 kb on - strand at 1926.215 kb on - strand at 1926.229 kb on + strand, within OKGIIK_08960 at 1926.257 kb on - strand, within OKGIIK_08960 at 1926.353 kb on + strand, within OKGIIK_08960 at 1926.362 kb on - strand, within OKGIIK_08960 at 1926.362 kb on - strand, within OKGIIK_08960 at 1926.362 kb on - strand, within OKGIIK_08960 at 1926.362 kb on - strand, within OKGIIK_08960 at 1926.362 kb on - strand, within OKGIIK_08960 at 1926.398 kb on + strand, within OKGIIK_08960 at 1926.398 kb on + strand, within OKGIIK_08960 at 1926.399 kb on - strand, within OKGIIK_08960 at 1926.399 kb on - strand, within OKGIIK_08960 at 1926.404 kb on + strand, within OKGIIK_08960 at 1926.404 kb on + strand, within OKGIIK_08960 at 1926.405 kb on - strand, within OKGIIK_08960 at 1926.405 kb on - strand, within OKGIIK_08960 at 1926.499 kb on + strand, within OKGIIK_08960 at 1926.499 kb on + strand, within OKGIIK_08960 at 1926.499 kb on + strand, within OKGIIK_08960 at 1926.500 kb on - strand, within OKGIIK_08960 at 1926.500 kb on - strand, within OKGIIK_08960 at 1926.561 kb on - strand, within OKGIIK_08960 at 1926.561 kb on - strand, within OKGIIK_08960 at 1926.736 kb on - strand, within OKGIIK_08960 at 1926.736 kb on - strand, within OKGIIK_08960 at 1926.736 kb on - strand, within OKGIIK_08960 at 1926.984 kb on + strand at 1926.984 kb on + strand at 1926.984 kb on + strand at 1926.984 kb on + strand at 1926.985 kb on - strand at 1926.985 kb on - strand at 1926.985 kb on - strand at 1927.055 kb on + strand at 1927.055 kb on + strand at 1927.055 kb on + strand at 1927.055 kb on + strand at 1927.055 kb on + strand at 1927.056 kb on - strand at 1927.056 kb on - strand at 1927.056 kb on - strand at 1927.056 kb on - strand at 1927.056 kb on - strand at 1927.058 kb on + strand at 1927.058 kb on + strand at 1927.059 kb on - strand at 1927.059 kb on - strand at 1927.147 kb on + strand at 1927.229 kb on + strand at 1927.229 kb on + strand at 1927.229 kb on + strand at 1927.230 kb on - strand at 1927.230 kb on - strand at 1927.230 kb on - strand at 1927.230 kb on - strand at 1927.230 kb on - strand at 1927.230 kb on - strand at 1927.297 kb on + strand at 1927.297 kb on + strand at 1927.297 kb on + strand at 1927.297 kb on + strand at 1927.298 kb on - strand at 1927.298 kb on - strand at 1927.472 kb on + strand at 1927.472 kb on + strand at 1927.540 kb on + strand at 1927.540 kb on + strand at 1927.540 kb on + strand at 1927.540 kb on + strand at 1927.673 kb on - strand, within OKGIIK_08965
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 1,925,439 + OKGIIK_08955 0.80 -1.4 1,925,440 - OKGIIK_08955 0.80 +0.1 1,925,440 - OKGIIK_08955 0.80 -1.6 1,925,550 + OKGIIK_08955 0.84 -0.5 1,925,551 - OKGIIK_08955 0.84 -1.2 1,925,551 - OKGIIK_08955 0.84 +2.7 1,925,551 - OKGIIK_08955 0.84 -0.8 1,925,551 - OKGIIK_08955 0.84 +1.3 1,925,593 - OKGIIK_08955 0.85 -0.9 1,925,664 + OKGIIK_08955 0.87 +0.2 1,925,665 - OKGIIK_08955 0.87 -0.9 1,925,665 - OKGIIK_08955 0.87 +0.1 1,925,665 - OKGIIK_08955 0.87 -1.3 1,925,665 - OKGIIK_08955 0.87 -0.6 1,925,665 - OKGIIK_08955 0.87 -3.1 1,925,823 + -1.7 1,925,823 + +1.1 1,926,024 + +0.4 1,926,025 - -1.8 1,926,025 - -0.4 1,926,025 - -1.4 1,926,136 + -2.1 1,926,136 + -0.1 1,926,136 + +1.9 1,926,137 - +0.3 1,926,137 - -0.8 1,926,137 - -1.2 1,926,138 - -1.8 1,926,215 - -0.4 1,926,215 - +1.6 1,926,229 + OKGIIK_08960 0.11 -1.1 1,926,257 - OKGIIK_08960 0.14 +0.4 1,926,353 + OKGIIK_08960 0.24 +0.0 1,926,362 - OKGIIK_08960 0.25 -1.4 1,926,362 - OKGIIK_08960 0.25 -3.2 1,926,362 - OKGIIK_08960 0.25 -0.0 1,926,362 - OKGIIK_08960 0.25 -0.3 1,926,362 - OKGIIK_08960 0.25 -0.9 1,926,398 + OKGIIK_08960 0.29 -0.1 1,926,398 + OKGIIK_08960 0.29 -2.4 1,926,399 - OKGIIK_08960 0.29 -2.1 1,926,399 - OKGIIK_08960 0.29 +1.8 1,926,404 + OKGIIK_08960 0.30 +0.1 1,926,404 + OKGIIK_08960 0.30 -2.1 1,926,405 - OKGIIK_08960 0.30 -1.6 1,926,405 - OKGIIK_08960 0.30 -0.0 1,926,499 + OKGIIK_08960 0.40 +0.4 1,926,499 + OKGIIK_08960 0.40 -1.5 1,926,499 + OKGIIK_08960 0.40 +0.9 1,926,500 - OKGIIK_08960 0.40 -1.8 1,926,500 - OKGIIK_08960 0.40 +0.1 1,926,561 - OKGIIK_08960 0.47 -1.2 1,926,561 - OKGIIK_08960 0.47 +2.4 1,926,736 - OKGIIK_08960 0.66 -0.4 1,926,736 - OKGIIK_08960 0.66 +1.9 1,926,736 - OKGIIK_08960 0.66 -1.0 1,926,984 + -1.3 1,926,984 + -1.8 1,926,984 + +0.8 1,926,984 + +0.8 1,926,985 - +0.1 1,926,985 - +1.4 1,926,985 - -0.2 1,927,055 + +0.8 1,927,055 + -0.6 1,927,055 + -0.4 1,927,055 + +0.4 1,927,055 + -0.2 1,927,056 - -0.8 1,927,056 - -3.1 1,927,056 - +0.3 1,927,056 - -0.2 1,927,056 - -1.9 1,927,058 + -2.7 1,927,058 + -0.4 1,927,059 - -0.2 1,927,059 - +0.5 1,927,147 + -0.7 1,927,229 + +0.1 1,927,229 + +0.3 1,927,229 + -0.6 1,927,230 - -0.2 1,927,230 - -0.6 1,927,230 - +0.5 1,927,230 - -0.1 1,927,230 - -1.5 1,927,230 - +1.3 1,927,297 + +1.2 1,927,297 + +0.2 1,927,297 + -1.4 1,927,297 + -0.1 1,927,298 - +0.1 1,927,298 - +0.1 1,927,472 + +0.4 1,927,472 + +0.6 1,927,540 + +0.4 1,927,540 + +0.4 1,927,540 + +0.4 1,927,540 + -0.6 1,927,673 - OKGIIK_08965 0.13 -0.1
Or see this region's nucleotide sequence