Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06973 and MPMX19_06974 are separated by 197 nucleotides MPMX19_06974 and MPMX19_06975 are separated by 150 nucleotides
MPMX19_06973: MPMX19_06973 - 2-methylfumaryl-CoA isomerase, at 250,184 to 251,389
_06973
MPMX19_06974: MPMX19_06974 - 4-formylbenzenesulfonate dehydrogenase TsaC1/TsaC2, at 251,587 to 252,339
_06974
MPMX19_06975: MPMX19_06975 - HTH-type transcriptional regulator HdfR, at 252,490 to 253,449
_06975
Position (kb) 251
252
253 Strain fitness (log2 ratio) -2
-1
0
1 at 250.653 kb on + strand, within MPMX19_06973 at 250.707 kb on + strand, within MPMX19_06973 at 250.707 kb on + strand, within MPMX19_06973 at 250.716 kb on + strand, within MPMX19_06973 at 250.716 kb on + strand, within MPMX19_06973 at 250.716 kb on + strand, within MPMX19_06973 at 250.717 kb on - strand, within MPMX19_06973 at 250.887 kb on + strand, within MPMX19_06973 at 250.888 kb on - strand, within MPMX19_06973 at 250.888 kb on - strand, within MPMX19_06973 at 250.986 kb on + strand, within MPMX19_06973 at 250.986 kb on + strand, within MPMX19_06973 at 250.986 kb on + strand, within MPMX19_06973 at 250.986 kb on + strand, within MPMX19_06973 at 250.986 kb on + strand, within MPMX19_06973 at 250.987 kb on - strand, within MPMX19_06973 at 250.987 kb on - strand, within MPMX19_06973 at 250.987 kb on - strand, within MPMX19_06973 at 250.987 kb on - strand, within MPMX19_06973 at 251.217 kb on + strand, within MPMX19_06973 at 251.217 kb on + strand, within MPMX19_06973 at 251.218 kb on - strand, within MPMX19_06973 at 251.257 kb on - strand, within MPMX19_06973 at 251.490 kb on + strand at 251.508 kb on + strand at 251.561 kb on + strand at 251.561 kb on + strand at 251.562 kb on - strand at 251.657 kb on + strand at 251.658 kb on - strand at 251.658 kb on - strand at 251.879 kb on + strand, within MPMX19_06974 at 251.880 kb on - strand, within MPMX19_06974 at 251.981 kb on + strand, within MPMX19_06974 at 251.982 kb on - strand, within MPMX19_06974 at 251.982 kb on - strand, within MPMX19_06974 at 251.982 kb on - strand, within MPMX19_06974 at 251.987 kb on + strand, within MPMX19_06974 at 251.987 kb on + strand, within MPMX19_06974 at 251.988 kb on - strand, within MPMX19_06974 at 251.988 kb on - strand, within MPMX19_06974 at 251.988 kb on - strand, within MPMX19_06974 at 251.988 kb on - strand, within MPMX19_06974 at 251.988 kb on - strand, within MPMX19_06974 at 252.384 kb on + strand at 252.385 kb on - strand at 252.478 kb on - strand at 253.010 kb on + strand, within MPMX19_06975 at 253.011 kb on - strand, within MPMX19_06975 at 253.011 kb on - strand, within MPMX19_06975 at 253.100 kb on + strand, within MPMX19_06975 at 253.101 kb on - strand, within MPMX19_06975 at 253.101 kb on - strand, within MPMX19_06975 at 253.101 kb on - strand, within MPMX19_06975 at 253.101 kb on - strand, within MPMX19_06975 at 253.101 kb on - strand, within MPMX19_06975 at 253.256 kb on + strand, within MPMX19_06975 at 253.256 kb on + strand, within MPMX19_06975 at 253.256 kb on + strand, within MPMX19_06975 at 253.257 kb on - strand, within MPMX19_06975 at 253.304 kb on + strand, within MPMX19_06975 at 253.304 kb on + strand, within MPMX19_06975 at 253.304 kb on + strand, within MPMX19_06975 at 253.304 kb on + strand, within MPMX19_06975 at 253.305 kb on - strand, within MPMX19_06975 at 253.305 kb on - strand, within MPMX19_06975 at 253.305 kb on - strand, within MPMX19_06975 at 253.305 kb on - strand, within MPMX19_06975 at 253.305 kb on - strand, within MPMX19_06975
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 250,653 + MPMX19_06973 0.39 -2.4 250,707 + MPMX19_06973 0.43 -0.5 250,707 + MPMX19_06973 0.43 -1.9 250,716 + MPMX19_06973 0.44 -1.6 250,716 + MPMX19_06973 0.44 -0.0 250,716 + MPMX19_06973 0.44 -1.5 250,717 - MPMX19_06973 0.44 +0.3 250,887 + MPMX19_06973 0.58 +0.1 250,888 - MPMX19_06973 0.58 +0.9 250,888 - MPMX19_06973 0.58 +0.7 250,986 + MPMX19_06973 0.67 +0.0 250,986 + MPMX19_06973 0.67 +1.4 250,986 + MPMX19_06973 0.67 -0.5 250,986 + MPMX19_06973 0.67 -0.9 250,986 + MPMX19_06973 0.67 +0.4 250,987 - MPMX19_06973 0.67 -0.9 250,987 - MPMX19_06973 0.67 -2.0 250,987 - MPMX19_06973 0.67 -1.5 250,987 - MPMX19_06973 0.67 -0.3 251,217 + MPMX19_06973 0.86 +0.6 251,217 + MPMX19_06973 0.86 -1.6 251,218 - MPMX19_06973 0.86 +1.4 251,257 - MPMX19_06973 0.89 -0.3 251,490 + +1.7 251,508 + -0.6 251,561 + -1.3 251,561 + -0.9 251,562 - +1.4 251,657 + -0.6 251,658 - +0.3 251,658 - -1.5 251,879 + MPMX19_06974 0.39 -0.5 251,880 - MPMX19_06974 0.39 +0.7 251,981 + MPMX19_06974 0.52 -0.2 251,982 - MPMX19_06974 0.52 -0.0 251,982 - MPMX19_06974 0.52 -0.8 251,982 - MPMX19_06974 0.52 -0.6 251,987 + MPMX19_06974 0.53 -1.4 251,987 + MPMX19_06974 0.53 -0.4 251,988 - MPMX19_06974 0.53 -1.2 251,988 - MPMX19_06974 0.53 +0.6 251,988 - MPMX19_06974 0.53 +0.1 251,988 - MPMX19_06974 0.53 -1.2 251,988 - MPMX19_06974 0.53 -0.8 252,384 + -1.3 252,385 - +0.5 252,478 - +0.1 253,010 + MPMX19_06975 0.54 -0.3 253,011 - MPMX19_06975 0.54 -0.3 253,011 - MPMX19_06975 0.54 -0.5 253,100 + MPMX19_06975 0.64 -0.7 253,101 - MPMX19_06975 0.64 +0.7 253,101 - MPMX19_06975 0.64 -1.1 253,101 - MPMX19_06975 0.64 -0.3 253,101 - MPMX19_06975 0.64 +0.4 253,101 - MPMX19_06975 0.64 +0.3 253,256 + MPMX19_06975 0.80 +1.5 253,256 + MPMX19_06975 0.80 +0.4 253,256 + MPMX19_06975 0.80 +0.3 253,257 - MPMX19_06975 0.80 -0.5 253,304 + MPMX19_06975 0.85 +0.7 253,304 + MPMX19_06975 0.85 -1.1 253,304 + MPMX19_06975 0.85 -0.1 253,304 + MPMX19_06975 0.85 +0.0 253,305 - MPMX19_06975 0.85 +0.1 253,305 - MPMX19_06975 0.85 -0.3 253,305 - MPMX19_06975 0.85 -1.1 253,305 - MPMX19_06975 0.85 -0.1 253,305 - MPMX19_06975 0.85 -0.0
Or see this region's nucleotide sequence