Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06941

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06940 and MPMX19_06941 are separated by 206 nucleotidesMPMX19_06941 and MPMX19_06942 overlap by 4 nucleotides MPMX19_06940: MPMX19_06940 - Ectoine dioxygenase, at 212,894 to 213,730 _06940 MPMX19_06941: MPMX19_06941 - putative acyl-CoA dehydrogenase fadE25, at 213,937 to 215,103 _06941 MPMX19_06942: MPMX19_06942 - Long-chain-fatty-acid--CoA ligase, at 215,100 to 216,626 _06942 Position (kb) 213 214 215 216Strain fitness (log2 ratio) -2 -1 0 1 2at 213.048 kb on + strand, within MPMX19_06940at 213.048 kb on + strand, within MPMX19_06940at 213.049 kb on - strand, within MPMX19_06940at 213.049 kb on - strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.057 kb on + strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.058 kb on - strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.219 kb on + strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.220 kb on - strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.285 kb on + strand, within MPMX19_06940at 213.286 kb on - strand, within MPMX19_06940at 213.286 kb on - strand, within MPMX19_06940at 213.286 kb on - strand, within MPMX19_06940at 213.378 kb on + strand, within MPMX19_06940at 213.378 kb on + strand, within MPMX19_06940at 213.378 kb on + strand, within MPMX19_06940at 213.378 kb on + strand, within MPMX19_06940at 213.379 kb on - strand, within MPMX19_06940at 213.379 kb on - strand, within MPMX19_06940at 213.379 kb on - strand, within MPMX19_06940at 213.441 kb on + strand, within MPMX19_06940at 213.442 kb on - strand, within MPMX19_06940at 213.442 kb on - strand, within MPMX19_06940at 213.442 kb on - strand, within MPMX19_06940at 213.442 kb on - strand, within MPMX19_06940at 213.442 kb on - strand, within MPMX19_06940at 213.447 kb on + strand, within MPMX19_06940at 213.447 kb on + strand, within MPMX19_06940at 213.447 kb on + strand, within MPMX19_06940at 213.448 kb on - strand, within MPMX19_06940at 213.448 kb on - strand, within MPMX19_06940at 213.448 kb on - strand, within MPMX19_06940at 213.448 kb on - strand, within MPMX19_06940at 213.448 kb on - strand, within MPMX19_06940at 213.448 kb on - strand, within MPMX19_06940at 213.684 kb on + strandat 213.684 kb on + strandat 213.685 kb on - strandat 213.700 kb on - strandat 213.793 kb on + strandat 213.793 kb on + strandat 213.801 kb on + strandat 213.950 kb on + strandat 213.950 kb on + strandat 213.951 kb on - strandat 214.096 kb on + strand, within MPMX19_06941at 214.096 kb on + strand, within MPMX19_06941at 214.097 kb on - strand, within MPMX19_06941at 214.097 kb on - strand, within MPMX19_06941at 214.097 kb on - strand, within MPMX19_06941at 214.097 kb on - strand, within MPMX19_06941at 214.097 kb on - strand, within MPMX19_06941at 214.098 kb on + strand, within MPMX19_06941at 214.098 kb on + strand, within MPMX19_06941at 214.098 kb on + strand, within MPMX19_06941at 214.098 kb on + strand, within MPMX19_06941at 214.098 kb on + strand, within MPMX19_06941at 214.098 kb on + strand, within MPMX19_06941at 214.098 kb on + strand, within MPMX19_06941at 214.098 kb on + strand, within MPMX19_06941at 214.098 kb on + strand, within MPMX19_06941at 214.099 kb on - strand, within MPMX19_06941at 214.099 kb on - strand, within MPMX19_06941at 214.123 kb on + strand, within MPMX19_06941at 214.124 kb on - strand, within MPMX19_06941at 214.124 kb on - strand, within MPMX19_06941at 214.180 kb on + strand, within MPMX19_06941at 214.181 kb on - strand, within MPMX19_06941at 214.181 kb on - strand, within MPMX19_06941at 214.309 kb on + strand, within MPMX19_06941at 214.309 kb on + strand, within MPMX19_06941at 214.309 kb on + strand, within MPMX19_06941at 214.310 kb on - strand, within MPMX19_06941at 214.438 kb on + strand, within MPMX19_06941at 214.439 kb on - strand, within MPMX19_06941at 214.439 kb on - strand, within MPMX19_06941at 214.654 kb on + strand, within MPMX19_06941at 214.654 kb on + strand, within MPMX19_06941at 214.654 kb on + strand, within MPMX19_06941at 214.655 kb on - strand, within MPMX19_06941at 214.783 kb on + strand, within MPMX19_06941at 214.784 kb on - strand, within MPMX19_06941at 214.831 kb on + strand, within MPMX19_06941at 214.831 kb on + strand, within MPMX19_06941at 214.831 kb on + strand, within MPMX19_06941at 214.831 kb on + strand, within MPMX19_06941at 214.832 kb on - strand, within MPMX19_06941at 214.832 kb on - strand, within MPMX19_06941at 214.832 kb on - strand, within MPMX19_06941at 214.832 kb on - strand, within MPMX19_06941at 214.955 kb on - strand, within MPMX19_06941at 214.987 kb on + strandat 215.008 kb on + strandat 215.008 kb on + strandat 215.118 kb on + strandat 215.119 kb on - strandat 215.119 kb on - strandat 215.181 kb on + strandat 215.181 kb on + strandat 215.181 kb on + strandat 215.181 kb on + strandat 215.181 kb on + strandat 215.181 kb on + strandat 215.181 kb on + strandat 215.181 kb on + strandat 215.182 kb on - strandat 215.182 kb on - strandat 215.182 kb on - strandat 215.182 kb on - strandat 215.182 kb on - strandat 215.371 kb on - strand, within MPMX19_06942at 215.371 kb on - strand, within MPMX19_06942at 215.371 kb on - strand, within MPMX19_06942at 215.371 kb on - strand, within MPMX19_06942at 215.550 kb on + strand, within MPMX19_06942at 215.550 kb on + strand, within MPMX19_06942at 215.550 kb on + strand, within MPMX19_06942at 215.550 kb on + strand, within MPMX19_06942at 215.550 kb on + strand, within MPMX19_06942at 215.550 kb on + strand, within MPMX19_06942at 215.551 kb on - strand, within MPMX19_06942at 215.551 kb on - strand, within MPMX19_06942at 215.551 kb on - strand, within MPMX19_06942at 215.551 kb on - strand, within MPMX19_06942at 215.551 kb on - strand, within MPMX19_06942at 215.604 kb on + strand, within MPMX19_06942at 215.604 kb on + strand, within MPMX19_06942at 215.604 kb on + strand, within MPMX19_06942at 215.605 kb on - strand, within MPMX19_06942at 215.624 kb on + strand, within MPMX19_06942at 215.624 kb on + strand, within MPMX19_06942at 215.624 kb on + strand, within MPMX19_06942at 215.625 kb on - strand, within MPMX19_06942at 215.625 kb on - strand, within MPMX19_06942at 215.625 kb on - strand, within MPMX19_06942at 215.703 kb on + strand, within MPMX19_06942at 215.703 kb on + strand, within MPMX19_06942at 215.703 kb on + strand, within MPMX19_06942at 215.703 kb on + strand, within MPMX19_06942at 215.703 kb on + strand, within MPMX19_06942at 215.703 kb on + strand, within MPMX19_06942at 215.703 kb on + strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.704 kb on - strand, within MPMX19_06942at 215.814 kb on + strand, within MPMX19_06942at 215.814 kb on + strand, within MPMX19_06942at 215.814 kb on + strand, within MPMX19_06942at 215.814 kb on + strand, within MPMX19_06942at 215.815 kb on - strand, within MPMX19_06942at 215.815 kb on - strand, within MPMX19_06942at 215.815 kb on - strand, within MPMX19_06942at 215.815 kb on - strand, within MPMX19_06942at 215.815 kb on - strand, within MPMX19_06942at 215.961 kb on + strand, within MPMX19_06942at 215.962 kb on - strand, within MPMX19_06942

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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213,048 + MPMX19_06940 0.18 -0.0
213,048 + MPMX19_06940 0.18 +0.4
213,049 - MPMX19_06940 0.19 -1.6
213,049 - MPMX19_06940 0.19 -2.5
213,057 + MPMX19_06940 0.19 +2.7
213,057 + MPMX19_06940 0.19 -0.3
213,057 + MPMX19_06940 0.19 +0.7
213,057 + MPMX19_06940 0.19 -1.6
213,057 + MPMX19_06940 0.19 +0.4
213,057 + MPMX19_06940 0.19 -0.4
213,057 + MPMX19_06940 0.19 -0.8
213,057 + MPMX19_06940 0.19 -1.6
213,057 + MPMX19_06940 0.19 -1.5
213,057 + MPMX19_06940 0.19 -1.0
213,057 + MPMX19_06940 0.19 -0.1
213,057 + MPMX19_06940 0.19 -0.6
213,057 + MPMX19_06940 0.19 -1.5
213,058 - MPMX19_06940 0.20 -1.3
213,058 - MPMX19_06940 0.20 -0.3
213,058 - MPMX19_06940 0.20 -0.6
213,058 - MPMX19_06940 0.20 +0.1
213,058 - MPMX19_06940 0.20 -1.0
213,058 - MPMX19_06940 0.20 -1.1
213,058 - MPMX19_06940 0.20 -1.1
213,058 - MPMX19_06940 0.20 -1.4
213,058 - MPMX19_06940 0.20 -1.1
213,058 - MPMX19_06940 0.20 -0.6
213,058 - MPMX19_06940 0.20 -0.1
213,058 - MPMX19_06940 0.20 -0.3
213,219 + MPMX19_06940 0.39 -0.2
213,219 + MPMX19_06940 0.39 -0.7
213,219 + MPMX19_06940 0.39 +0.2
213,219 + MPMX19_06940 0.39 -0.4
213,219 + MPMX19_06940 0.39 +0.4
213,219 + MPMX19_06940 0.39 +1.7
213,219 + MPMX19_06940 0.39 +0.6
213,219 + MPMX19_06940 0.39 +0.3
213,219 + MPMX19_06940 0.39 -0.2
213,219 + MPMX19_06940 0.39 -1.0
213,219 + MPMX19_06940 0.39 -0.5
213,220 - MPMX19_06940 0.39 -2.2
213,220 - MPMX19_06940 0.39 +0.1
213,220 - MPMX19_06940 0.39 -1.3
213,220 - MPMX19_06940 0.39 -0.7
213,220 - MPMX19_06940 0.39 -0.1
213,220 - MPMX19_06940 0.39 -0.5
213,220 - MPMX19_06940 0.39 -0.3
213,220 - MPMX19_06940 0.39 -1.5
213,220 - MPMX19_06940 0.39 +2.4
213,220 - MPMX19_06940 0.39 -1.7
213,220 - MPMX19_06940 0.39 -0.2
213,220 - MPMX19_06940 0.39 -0.2
213,220 - MPMX19_06940 0.39 -0.0
213,220 - MPMX19_06940 0.39 +0.4
213,285 + MPMX19_06940 0.47 -1.7
213,285 + MPMX19_06940 0.47 +0.5
213,285 + MPMX19_06940 0.47 +0.0
213,285 + MPMX19_06940 0.47 +1.1
213,285 + MPMX19_06940 0.47 +0.1
213,285 + MPMX19_06940 0.47 +0.3
213,285 + MPMX19_06940 0.47 -0.6
213,285 + MPMX19_06940 0.47 +0.5
213,286 - MPMX19_06940 0.47 -0.7
213,286 - MPMX19_06940 0.47 -1.1
213,286 - MPMX19_06940 0.47 +0.1
213,378 + MPMX19_06940 0.58 -0.7
213,378 + MPMX19_06940 0.58 -0.7
213,378 + MPMX19_06940 0.58 +0.4
213,378 + MPMX19_06940 0.58 -0.4
213,379 - MPMX19_06940 0.58 -0.3
213,379 - MPMX19_06940 0.58 -0.7
213,379 - MPMX19_06940 0.58 +0.9
213,441 + MPMX19_06940 0.65 -0.6
213,442 - MPMX19_06940 0.65 -1.1
213,442 - MPMX19_06940 0.65 -0.0
213,442 - MPMX19_06940 0.65 -0.1
213,442 - MPMX19_06940 0.65 -1.3
213,442 - MPMX19_06940 0.65 -1.2
213,447 + MPMX19_06940 0.66 -0.4
213,447 + MPMX19_06940 0.66 -1.4
213,447 + MPMX19_06940 0.66 -0.1
213,448 - MPMX19_06940 0.66 +0.0
213,448 - MPMX19_06940 0.66 +0.5
213,448 - MPMX19_06940 0.66 -0.9
213,448 - MPMX19_06940 0.66 -0.6
213,448 - MPMX19_06940 0.66 -1.7
213,448 - MPMX19_06940 0.66 -1.1
213,684 + +0.4
213,684 + +0.1
213,685 - -0.3
213,700 - +0.1
213,793 + -1.3
213,793 + -0.9
213,801 + -0.0
213,950 + +0.1
213,950 + +0.1
213,951 - -0.7
214,096 + MPMX19_06941 0.14 -1.0
214,096 + MPMX19_06941 0.14 +0.5
214,097 - MPMX19_06941 0.14 -0.6
214,097 - MPMX19_06941 0.14 +0.2
214,097 - MPMX19_06941 0.14 +0.7
214,097 - MPMX19_06941 0.14 +0.0
214,097 - MPMX19_06941 0.14 -0.1
214,098 + MPMX19_06941 0.14 +0.2
214,098 + MPMX19_06941 0.14 -0.5
214,098 + MPMX19_06941 0.14 +0.3
214,098 + MPMX19_06941 0.14 -1.3
214,098 + MPMX19_06941 0.14 -1.2
214,098 + MPMX19_06941 0.14 -2.1
214,098 + MPMX19_06941 0.14 -0.5
214,098 + MPMX19_06941 0.14 +0.3
214,098 + MPMX19_06941 0.14 -0.6
214,099 - MPMX19_06941 0.14 +0.6
214,099 - MPMX19_06941 0.14 +0.9
214,123 + MPMX19_06941 0.16 +0.9
214,124 - MPMX19_06941 0.16 +0.4
214,124 - MPMX19_06941 0.16 -1.0
214,180 + MPMX19_06941 0.21 -2.3
214,181 - MPMX19_06941 0.21 -0.1
214,181 - MPMX19_06941 0.21 -0.7
214,309 + MPMX19_06941 0.32 +0.4
214,309 + MPMX19_06941 0.32 -0.3
214,309 + MPMX19_06941 0.32 -1.7
214,310 - MPMX19_06941 0.32 +0.6
214,438 + MPMX19_06941 0.43 -0.5
214,439 - MPMX19_06941 0.43 -0.5
214,439 - MPMX19_06941 0.43 -1.9
214,654 + MPMX19_06941 0.61 -1.7
214,654 + MPMX19_06941 0.61 -1.6
214,654 + MPMX19_06941 0.61 -1.3
214,655 - MPMX19_06941 0.62 -0.7
214,783 + MPMX19_06941 0.72 +1.5
214,784 - MPMX19_06941 0.73 -0.5
214,831 + MPMX19_06941 0.77 -1.7
214,831 + MPMX19_06941 0.77 -0.6
214,831 + MPMX19_06941 0.77 -1.3
214,831 + MPMX19_06941 0.77 -0.2
214,832 - MPMX19_06941 0.77 -0.1
214,832 - MPMX19_06941 0.77 -1.1
214,832 - MPMX19_06941 0.77 +0.7
214,832 - MPMX19_06941 0.77 -1.5
214,955 - MPMX19_06941 0.87 -0.1
214,987 + -1.9
215,008 + +0.9
215,008 + +0.1
215,118 + +0.1
215,119 - +0.7
215,119 - +0.3
215,181 + -0.3
215,181 + -0.6
215,181 + +0.5
215,181 + -0.6
215,181 + -0.1
215,181 + -0.6
215,181 + +0.5
215,181 + -1.2
215,182 - +0.3
215,182 - -1.0
215,182 - -0.7
215,182 - -1.0
215,182 - -0.3
215,371 - MPMX19_06942 0.18 +1.3
215,371 - MPMX19_06942 0.18 -0.7
215,371 - MPMX19_06942 0.18 -0.6
215,371 - MPMX19_06942 0.18 +0.3
215,550 + MPMX19_06942 0.29 -0.5
215,550 + MPMX19_06942 0.29 -0.1
215,550 + MPMX19_06942 0.29 +0.4
215,550 + MPMX19_06942 0.29 -1.7
215,550 + MPMX19_06942 0.29 -0.8
215,550 + MPMX19_06942 0.29 +0.6
215,551 - MPMX19_06942 0.30 -1.7
215,551 - MPMX19_06942 0.30 -0.2
215,551 - MPMX19_06942 0.30 -1.7
215,551 - MPMX19_06942 0.30 -1.0
215,551 - MPMX19_06942 0.30 +1.1
215,604 + MPMX19_06942 0.33 -0.1
215,604 + MPMX19_06942 0.33 -2.5
215,604 + MPMX19_06942 0.33 -0.4
215,605 - MPMX19_06942 0.33 -1.3
215,624 + MPMX19_06942 0.34 -1.3
215,624 + MPMX19_06942 0.34 +0.1
215,624 + MPMX19_06942 0.34 +0.4
215,625 - MPMX19_06942 0.34 +0.3
215,625 - MPMX19_06942 0.34 -0.6
215,625 - MPMX19_06942 0.34 +0.3
215,703 + MPMX19_06942 0.39 +0.4
215,703 + MPMX19_06942 0.39 -0.6
215,703 + MPMX19_06942 0.39 -0.9
215,703 + MPMX19_06942 0.39 +2.1
215,703 + MPMX19_06942 0.39 +0.3
215,703 + MPMX19_06942 0.39 +0.3
215,703 + MPMX19_06942 0.39 -2.5
215,704 - MPMX19_06942 0.40 -1.8
215,704 - MPMX19_06942 0.40 +0.3
215,704 - MPMX19_06942 0.40 -1.5
215,704 - MPMX19_06942 0.40 +0.4
215,704 - MPMX19_06942 0.40 +1.0
215,704 - MPMX19_06942 0.40 -1.2
215,704 - MPMX19_06942 0.40 +0.9
215,704 - MPMX19_06942 0.40 +0.7
215,704 - MPMX19_06942 0.40 -0.0
215,704 - MPMX19_06942 0.40 +0.0
215,704 - MPMX19_06942 0.40 +0.0
215,704 - MPMX19_06942 0.40 +0.1
215,814 + MPMX19_06942 0.47 +0.2
215,814 + MPMX19_06942 0.47 -0.4
215,814 + MPMX19_06942 0.47 -1.1
215,814 + MPMX19_06942 0.47 +1.6
215,815 - MPMX19_06942 0.47 +0.6
215,815 - MPMX19_06942 0.47 -0.3
215,815 - MPMX19_06942 0.47 +0.3
215,815 - MPMX19_06942 0.47 -0.5
215,815 - MPMX19_06942 0.47 -1.0
215,961 + MPMX19_06942 0.56 +0.8
215,962 - MPMX19_06942 0.56 -0.0

Or see this region's nucleotide sequence