Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06920 and MPMX19_06921 are separated by 217 nucleotides MPMX19_06921 and MPMX19_06922 overlap by 32 nucleotides MPMX19_06922 and MPMX19_06923 are separated by 29 nucleotides
MPMX19_06920: MPMX19_06920 - Purine ribonucleoside efflux pump NepI, at 195,319 to 196,527
_06920
MPMX19_06921: MPMX19_06921 - hypothetical protein, at 196,745 to 197,320
_06921
MPMX19_06922: MPMX19_06922 - hypothetical protein, at 197,289 to 197,678
_06922
MPMX19_06923: MPMX19_06923 - hypothetical protein, at 197,708 to 198,541
_06923
Position (kb) 196
197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 195.798 kb on + strand, within MPMX19_06920 at 195.799 kb on - strand, within MPMX19_06920 at 195.799 kb on - strand, within MPMX19_06920 at 195.816 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.000 kb on + strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.001 kb on - strand, within MPMX19_06920 at 196.002 kb on + strand, within MPMX19_06920 at 196.002 kb on + strand, within MPMX19_06920 at 196.002 kb on + strand, within MPMX19_06920 at 196.002 kb on + strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.003 kb on - strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.006 kb on + strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.007 kb on - strand, within MPMX19_06920 at 196.047 kb on + strand, within MPMX19_06920 at 196.048 kb on - strand, within MPMX19_06920 at 196.213 kb on + strand, within MPMX19_06920 at 196.213 kb on + strand, within MPMX19_06920 at 196.227 kb on + strand, within MPMX19_06920 at 196.227 kb on + strand, within MPMX19_06920 at 196.227 kb on + strand, within MPMX19_06920 at 196.228 kb on - strand, within MPMX19_06920 at 196.228 kb on - strand, within MPMX19_06920 at 196.228 kb on - strand, within MPMX19_06920 at 196.228 kb on - strand, within MPMX19_06920 at 196.525 kb on + strand at 196.525 kb on + strand at 196.526 kb on - strand at 196.526 kb on - strand at 196.526 kb on - strand at 196.612 kb on - strand at 196.691 kb on + strand at 196.692 kb on - strand at 196.692 kb on - strand at 196.692 kb on - strand at 196.714 kb on + strand at 196.714 kb on + strand at 196.714 kb on + strand at 196.714 kb on + strand at 196.762 kb on - strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.789 kb on + strand at 196.790 kb on - strand at 196.790 kb on - strand at 196.790 kb on - strand at 196.790 kb on - strand at 196.790 kb on - strand at 196.790 kb on - strand at 196.790 kb on - strand at 196.790 kb on - strand at 196.790 kb on - strand at 196.853 kb on + strand, within MPMX19_06921 at 196.853 kb on + strand, within MPMX19_06921 at 196.854 kb on - strand, within MPMX19_06921 at 196.854 kb on - strand, within MPMX19_06921 at 196.854 kb on - strand, within MPMX19_06921 at 196.904 kb on + strand, within MPMX19_06921 at 197.051 kb on + strand, within MPMX19_06921 at 197.051 kb on + strand, within MPMX19_06921 at 197.052 kb on - strand, within MPMX19_06921 at 197.127 kb on - strand, within MPMX19_06921 at 197.163 kb on - strand, within MPMX19_06921 at 197.163 kb on - strand, within MPMX19_06921 at 197.163 kb on - strand, within MPMX19_06921 at 197.163 kb on - strand, within MPMX19_06921 at 197.163 kb on - strand, within MPMX19_06921 at 197.163 kb on - strand, within MPMX19_06921 at 197.288 kb on + strand at 197.318 kb on + strand at 197.318 kb on + strand at 197.318 kb on + strand at 197.319 kb on - strand at 197.319 kb on - strand at 197.319 kb on - strand at 197.319 kb on - strand at 197.619 kb on + strand, within MPMX19_06922 at 197.620 kb on - strand, within MPMX19_06922 at 197.711 kb on + strand at 197.711 kb on + strand at 197.711 kb on + strand at 197.711 kb on + strand at 197.711 kb on + strand at 197.711 kb on + strand at 197.712 kb on - strand at 197.712 kb on - strand at 197.712 kb on - strand at 197.712 kb on - strand at 197.712 kb on - strand at 198.125 kb on + strand, within MPMX19_06923 at 198.125 kb on + strand, within MPMX19_06923 at 198.212 kb on + strand, within MPMX19_06923 at 198.212 kb on + strand, within MPMX19_06923 at 198.212 kb on + strand, within MPMX19_06923 at 198.212 kb on + strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 195,798 + MPMX19_06920 0.40 +1.0 195,799 - MPMX19_06920 0.40 -2.5 195,799 - MPMX19_06920 0.40 +0.5 195,816 + MPMX19_06920 0.41 +0.3 196,000 + MPMX19_06920 0.56 +0.1 196,000 + MPMX19_06920 0.56 -1.3 196,000 + MPMX19_06920 0.56 +0.7 196,000 + MPMX19_06920 0.56 -2.1 196,000 + MPMX19_06920 0.56 -0.0 196,000 + MPMX19_06920 0.56 -0.7 196,000 + MPMX19_06920 0.56 -0.7 196,000 + MPMX19_06920 0.56 -1.6 196,001 - MPMX19_06920 0.56 -0.5 196,001 - MPMX19_06920 0.56 +0.1 196,001 - MPMX19_06920 0.56 -0.0 196,001 - MPMX19_06920 0.56 +0.6 196,001 - MPMX19_06920 0.56 +0.1 196,001 - MPMX19_06920 0.56 +1.2 196,001 - MPMX19_06920 0.56 +1.9 196,001 - MPMX19_06920 0.56 -0.8 196,001 - MPMX19_06920 0.56 +1.2 196,001 - MPMX19_06920 0.56 +1.2 196,001 - MPMX19_06920 0.56 -0.2 196,002 + MPMX19_06920 0.56 -1.5 196,002 + MPMX19_06920 0.56 -1.3 196,002 + MPMX19_06920 0.56 -0.9 196,002 + MPMX19_06920 0.56 -1.5 196,003 - MPMX19_06920 0.57 -0.0 196,003 - MPMX19_06920 0.57 +0.5 196,003 - MPMX19_06920 0.57 +1.2 196,003 - MPMX19_06920 0.57 -0.7 196,003 - MPMX19_06920 0.57 +0.1 196,003 - MPMX19_06920 0.57 +0.3 196,003 - MPMX19_06920 0.57 +0.4 196,003 - MPMX19_06920 0.57 -0.4 196,006 + MPMX19_06920 0.57 -0.4 196,006 + MPMX19_06920 0.57 -0.2 196,006 + MPMX19_06920 0.57 -0.1 196,006 + MPMX19_06920 0.57 +0.5 196,006 + MPMX19_06920 0.57 +0.3 196,006 + MPMX19_06920 0.57 +0.6 196,006 + MPMX19_06920 0.57 -1.1 196,007 - MPMX19_06920 0.57 -0.2 196,007 - MPMX19_06920 0.57 +0.4 196,007 - MPMX19_06920 0.57 -0.6 196,007 - MPMX19_06920 0.57 -0.6 196,007 - MPMX19_06920 0.57 -0.2 196,007 - MPMX19_06920 0.57 +0.1 196,007 - MPMX19_06920 0.57 -1.1 196,047 + MPMX19_06920 0.60 +0.5 196,048 - MPMX19_06920 0.60 +1.1 196,213 + MPMX19_06920 0.74 -2.2 196,213 + MPMX19_06920 0.74 -3.1 196,227 + MPMX19_06920 0.75 -2.1 196,227 + MPMX19_06920 0.75 -0.7 196,227 + MPMX19_06920 0.75 +0.6 196,228 - MPMX19_06920 0.75 -0.8 196,228 - MPMX19_06920 0.75 -0.9 196,228 - MPMX19_06920 0.75 -1.3 196,228 - MPMX19_06920 0.75 +0.4 196,525 + +0.2 196,525 + +0.1 196,526 - +1.1 196,526 - +1.3 196,526 - -1.6 196,612 - -0.3 196,691 + -0.6 196,692 - -0.6 196,692 - -1.2 196,692 - +0.3 196,714 + -1.5 196,714 + -1.3 196,714 + +1.1 196,714 + -1.0 196,762 - +1.2 196,789 + -0.3 196,789 + +0.1 196,789 + +1.7 196,789 + -2.0 196,789 + -1.2 196,789 + -0.3 196,789 + -0.6 196,789 + -1.9 196,789 + -0.3 196,789 + -2.0 196,789 + -0.6 196,790 - +1.3 196,790 - -1.1 196,790 - +0.2 196,790 - -0.9 196,790 - +1.1 196,790 - -0.5 196,790 - -0.1 196,790 - +0.2 196,790 - -1.2 196,853 + MPMX19_06921 0.19 -1.5 196,853 + MPMX19_06921 0.19 +0.3 196,854 - MPMX19_06921 0.19 -0.1 196,854 - MPMX19_06921 0.19 -0.3 196,854 - MPMX19_06921 0.19 -1.1 196,904 + MPMX19_06921 0.28 -1.2 197,051 + MPMX19_06921 0.53 -0.5 197,051 + MPMX19_06921 0.53 -1.2 197,052 - MPMX19_06921 0.53 -0.3 197,127 - MPMX19_06921 0.66 -0.2 197,163 - MPMX19_06921 0.73 -0.3 197,163 - MPMX19_06921 0.73 -0.0 197,163 - MPMX19_06921 0.73 -0.7 197,163 - MPMX19_06921 0.73 -0.3 197,163 - MPMX19_06921 0.73 -0.0 197,163 - MPMX19_06921 0.73 -0.5 197,288 + +1.0 197,318 + -0.1 197,318 + -1.3 197,318 + -1.0 197,319 - +1.3 197,319 - +0.3 197,319 - -0.6 197,319 - -0.5 197,619 + MPMX19_06922 0.85 -1.2 197,620 - MPMX19_06922 0.85 +1.2 197,711 + +0.7 197,711 + +0.9 197,711 + -1.5 197,711 + -0.0 197,711 + -0.2 197,711 + +1.2 197,712 - +0.1 197,712 - -0.9 197,712 - -1.3 197,712 - -0.6 197,712 - +1.1 198,125 + MPMX19_06923 0.50 -1.7 198,125 + MPMX19_06923 0.50 -1.1 198,212 + MPMX19_06923 0.60 -0.4 198,212 + MPMX19_06923 0.60 -2.1 198,212 + MPMX19_06923 0.60 -1.1 198,212 + MPMX19_06923 0.60 +0.3 198,213 - MPMX19_06923 0.61 -0.6 198,213 - MPMX19_06923 0.61 +0.8 198,213 - MPMX19_06923 0.61 -0.3 198,213 - MPMX19_06923 0.61 -0.3 198,213 - MPMX19_06923 0.61 -0.6
Or see this region's nucleotide sequence