Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06897

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06896 and MPMX19_06897 are separated by 203 nucleotidesMPMX19_06897 and MPMX19_06898 are separated by 43 nucleotides MPMX19_06896: MPMX19_06896 - L-aspartate oxidase, at 170,007 to 171,695 _06896 MPMX19_06897: MPMX19_06897 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 171,899 to 172,384 _06897 MPMX19_06898: MPMX19_06898 - FAD-dependent urate hydroxylase, at 172,428 to 173,885 _06898 Position (kb) 171 172 173Strain fitness (log2 ratio) -3 -2 -1 0 1at 170.906 kb on - strand, within MPMX19_06896at 170.906 kb on - strand, within MPMX19_06896at 170.906 kb on - strand, within MPMX19_06896at 170.909 kb on - strand, within MPMX19_06896at 170.909 kb on - strand, within MPMX19_06896at 170.909 kb on - strand, within MPMX19_06896at 170.909 kb on - strand, within MPMX19_06896at 171.512 kb on - strand, within MPMX19_06896at 171.512 kb on - strand, within MPMX19_06896at 171.872 kb on + strandat 171.905 kb on - strandat 171.971 kb on + strand, within MPMX19_06897at 171.971 kb on + strand, within MPMX19_06897at 171.971 kb on + strand, within MPMX19_06897at 171.971 kb on + strand, within MPMX19_06897at 172.008 kb on - strand, within MPMX19_06897at 172.280 kb on + strand, within MPMX19_06897at 172.280 kb on + strand, within MPMX19_06897at 172.280 kb on + strand, within MPMX19_06897at 172.280 kb on + strand, within MPMX19_06897at 172.280 kb on + strand, within MPMX19_06897at 172.358 kb on + strandat 172.359 kb on - strandat 172.701 kb on + strand, within MPMX19_06898at 172.701 kb on + strand, within MPMX19_06898at 172.701 kb on + strand, within MPMX19_06898at 172.701 kb on + strand, within MPMX19_06898at 172.701 kb on + strand, within MPMX19_06898at 172.701 kb on + strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.702 kb on - strand, within MPMX19_06898at 172.855 kb on - strand, within MPMX19_06898at 172.855 kb on - strand, within MPMX19_06898at 172.855 kb on - strand, within MPMX19_06898at 172.940 kb on - strand, within MPMX19_06898at 173.196 kb on + strand, within MPMX19_06898at 173.196 kb on + strand, within MPMX19_06898at 173.196 kb on + strand, within MPMX19_06898at 173.196 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898at 173.316 kb on + strand, within MPMX19_06898

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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170,906 - MPMX19_06896 0.53 -1.9
170,906 - MPMX19_06896 0.53 -1.5
170,906 - MPMX19_06896 0.53 +1.0
170,909 - MPMX19_06896 0.53 -0.8
170,909 - MPMX19_06896 0.53 +0.5
170,909 - MPMX19_06896 0.53 +0.4
170,909 - MPMX19_06896 0.53 +0.0
171,512 - MPMX19_06896 0.89 -0.2
171,512 - MPMX19_06896 0.89 -0.1
171,872 + -0.7
171,905 - -0.5
171,971 + MPMX19_06897 0.15 -1.4
171,971 + MPMX19_06897 0.15 -0.2
171,971 + MPMX19_06897 0.15 +1.5
171,971 + MPMX19_06897 0.15 +1.0
172,008 - MPMX19_06897 0.22 +0.0
172,280 + MPMX19_06897 0.78 -0.2
172,280 + MPMX19_06897 0.78 -1.4
172,280 + MPMX19_06897 0.78 +0.3
172,280 + MPMX19_06897 0.78 +0.1
172,280 + MPMX19_06897 0.78 -0.3
172,358 + +0.3
172,359 - -0.3
172,701 + MPMX19_06898 0.19 -0.8
172,701 + MPMX19_06898 0.19 -0.3
172,701 + MPMX19_06898 0.19 -1.6
172,701 + MPMX19_06898 0.19 +0.9
172,701 + MPMX19_06898 0.19 -3.1
172,701 + MPMX19_06898 0.19 -0.4
172,702 - MPMX19_06898 0.19 -0.3
172,702 - MPMX19_06898 0.19 -0.5
172,702 - MPMX19_06898 0.19 +1.4
172,702 - MPMX19_06898 0.19 -0.5
172,702 - MPMX19_06898 0.19 -0.9
172,702 - MPMX19_06898 0.19 -1.0
172,702 - MPMX19_06898 0.19 -0.5
172,702 - MPMX19_06898 0.19 +0.0
172,702 - MPMX19_06898 0.19 -0.5
172,702 - MPMX19_06898 0.19 +0.2
172,702 - MPMX19_06898 0.19 -0.1
172,702 - MPMX19_06898 0.19 +0.4
172,702 - MPMX19_06898 0.19 -0.4
172,702 - MPMX19_06898 0.19 -0.6
172,702 - MPMX19_06898 0.19 -0.5
172,702 - MPMX19_06898 0.19 -1.3
172,855 - MPMX19_06898 0.29 -0.7
172,855 - MPMX19_06898 0.29 -1.6
172,855 - MPMX19_06898 0.29 -0.3
172,940 - MPMX19_06898 0.35 +0.6
173,196 + MPMX19_06898 0.53 +0.6
173,196 + MPMX19_06898 0.53 +0.0
173,196 + MPMX19_06898 0.53 -1.0
173,196 + MPMX19_06898 0.53 -0.4
173,316 + MPMX19_06898 0.61 +0.1
173,316 + MPMX19_06898 0.61 -0.6
173,316 + MPMX19_06898 0.61 +0.7
173,316 + MPMX19_06898 0.61 -0.6
173,316 + MPMX19_06898 0.61 -0.6
173,316 + MPMX19_06898 0.61 +0.1
173,316 + MPMX19_06898 0.61 +0.9

Or see this region's nucleotide sequence