Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06894

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06893 and MPMX19_06894 are separated by 59 nucleotidesMPMX19_06894 and MPMX19_06895 are separated by 36 nucleotidesMPMX19_06895 and MPMX19_06896 overlap by 4 nucleotides MPMX19_06893: MPMX19_06893 - Nitrilotriacetate monooxygenase component A, at 167,213 to 168,532 _06893 MPMX19_06894: MPMX19_06894 - hypothetical protein, at 168,592 to 169,626 _06894 MPMX19_06895: MPMX19_06895 - hypothetical protein, at 169,663 to 170,010 _06895 MPMX19_06896: MPMX19_06896 - L-aspartate oxidase, at 170,007 to 171,695 _06896 Position (kb) 168 169 170Strain fitness (log2 ratio) -2 -1 0 1at 168.354 kb on + strand, within MPMX19_06893at 168.354 kb on + strand, within MPMX19_06893at 168.830 kb on + strand, within MPMX19_06894at 168.830 kb on + strand, within MPMX19_06894at 168.830 kb on + strand, within MPMX19_06894at 168.830 kb on + strand, within MPMX19_06894at 168.831 kb on - strand, within MPMX19_06894at 168.831 kb on - strand, within MPMX19_06894at 168.831 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 168.885 kb on - strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.013 kb on + strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.014 kb on - strand, within MPMX19_06894at 169.146 kb on - strand, within MPMX19_06894at 169.146 kb on - strand, within MPMX19_06894at 169.146 kb on - strand, within MPMX19_06894at 169.146 kb on - strand, within MPMX19_06894at 169.146 kb on - strand, within MPMX19_06894at 169.146 kb on - strand, within MPMX19_06894at 169.403 kb on + strand, within MPMX19_06894at 169.404 kb on - strand, within MPMX19_06894at 169.842 kb on - strand, within MPMX19_06895at 170.362 kb on + strand, within MPMX19_06896

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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168,354 + MPMX19_06893 0.86 -0.5
168,354 + MPMX19_06893 0.86 -0.3
168,830 + MPMX19_06894 0.23 -0.5
168,830 + MPMX19_06894 0.23 -1.6
168,830 + MPMX19_06894 0.23 -1.5
168,830 + MPMX19_06894 0.23 -1.2
168,831 - MPMX19_06894 0.23 +1.0
168,831 - MPMX19_06894 0.23 -1.3
168,831 - MPMX19_06894 0.23 -1.1
168,885 - MPMX19_06894 0.28 -1.6
168,885 - MPMX19_06894 0.28 +0.1
168,885 - MPMX19_06894 0.28 +0.2
168,885 - MPMX19_06894 0.28 -1.4
168,885 - MPMX19_06894 0.28 +1.7
168,885 - MPMX19_06894 0.28 +0.2
168,885 - MPMX19_06894 0.28 -1.3
168,885 - MPMX19_06894 0.28 -0.5
168,885 - MPMX19_06894 0.28 -0.4
168,885 - MPMX19_06894 0.28 -1.3
169,013 + MPMX19_06894 0.41 -0.9
169,013 + MPMX19_06894 0.41 +0.1
169,013 + MPMX19_06894 0.41 -0.5
169,013 + MPMX19_06894 0.41 +0.7
169,013 + MPMX19_06894 0.41 -2.3
169,013 + MPMX19_06894 0.41 -0.5
169,013 + MPMX19_06894 0.41 +0.8
169,014 - MPMX19_06894 0.41 -0.0
169,014 - MPMX19_06894 0.41 -0.3
169,014 - MPMX19_06894 0.41 -2.1
169,014 - MPMX19_06894 0.41 +1.4
169,014 - MPMX19_06894 0.41 -1.1
169,014 - MPMX19_06894 0.41 +0.4
169,014 - MPMX19_06894 0.41 -1.6
169,146 - MPMX19_06894 0.54 -0.3
169,146 - MPMX19_06894 0.54 -0.1
169,146 - MPMX19_06894 0.54 +0.4
169,146 - MPMX19_06894 0.54 +1.7
169,146 - MPMX19_06894 0.54 +0.1
169,146 - MPMX19_06894 0.54 +0.0
169,403 + MPMX19_06894 0.78 -0.3
169,404 - MPMX19_06894 0.78 +0.3
169,842 - MPMX19_06895 0.51 -0.7
170,362 + MPMX19_06896 0.21 -0.5

Or see this region's nucleotide sequence