Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06862

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06861 and MPMX19_06862 are separated by 11 nucleotidesMPMX19_06862 and MPMX19_06863 overlap by 4 nucleotidesMPMX19_06863 and MPMX19_06864 are separated by 231 nucleotides MPMX19_06861: MPMX19_06861 - Hydrogen cyanide synthase subunit HcnB, at 131,503 to 132,888 _06861 MPMX19_06862: MPMX19_06862 - hypothetical protein, at 132,900 to 133,406 _06862 MPMX19_06863: MPMX19_06863 - hypothetical protein, at 133,403 to 133,882 _06863 MPMX19_06864: MPMX19_06864 - hypothetical protein, at 134,114 to 134,458 _06864 Position (kb) 132 133 134Strain fitness (log2 ratio) -2 -1 0 1 2at 131.914 kb on + strand, within MPMX19_06861at 131.914 kb on + strand, within MPMX19_06861at 131.915 kb on - strand, within MPMX19_06861at 131.915 kb on - strand, within MPMX19_06861at 131.915 kb on - strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.164 kb on - strand, within MPMX19_06861at 132.164 kb on - strand, within MPMX19_06861at 132.352 kb on + strand, within MPMX19_06861at 132.352 kb on + strand, within MPMX19_06861at 132.353 kb on - strand, within MPMX19_06861at 132.353 kb on - strand, within MPMX19_06861at 132.418 kb on + strand, within MPMX19_06861at 132.418 kb on + strand, within MPMX19_06861at 132.418 kb on + strand, within MPMX19_06861at 132.418 kb on + strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.688 kb on + strand, within MPMX19_06861at 132.688 kb on + strand, within MPMX19_06861at 132.689 kb on - strand, within MPMX19_06861at 132.758 kb on - strandat 133.261 kb on + strand, within MPMX19_06862at 133.261 kb on + strand, within MPMX19_06862at 133.261 kb on + strand, within MPMX19_06862at 133.261 kb on + strand, within MPMX19_06862at 133.262 kb on - strand, within MPMX19_06862at 133.262 kb on - strand, within MPMX19_06862at 133.410 kb on + strandat 133.410 kb on + strandat 133.410 kb on + strandat 133.437 kb on + strandat 133.437 kb on + strandat 133.650 kb on + strand, within MPMX19_06863at 133.650 kb on + strand, within MPMX19_06863at 133.650 kb on + strand, within MPMX19_06863at 133.650 kb on + strand, within MPMX19_06863at 133.650 kb on + strand, within MPMX19_06863at 133.725 kb on + strand, within MPMX19_06863at 133.725 kb on + strand, within MPMX19_06863at 133.726 kb on - strand, within MPMX19_06863at 133.836 kb on + strandat 133.837 kb on - strandat 133.927 kb on - strandat 134.144 kb on + strandat 134.144 kb on + strandat 134.144 kb on + strandat 134.144 kb on + strandat 134.144 kb on + strandat 134.144 kb on + strandat 134.145 kb on - strandat 134.145 kb on - strandat 134.145 kb on - strandat 134.273 kb on + strand, within MPMX19_06864at 134.273 kb on + strand, within MPMX19_06864at 134.273 kb on + strand, within MPMX19_06864at 134.273 kb on + strand, within MPMX19_06864at 134.273 kb on + strand, within MPMX19_06864at 134.273 kb on + strand, within MPMX19_06864at 134.273 kb on + strand, within MPMX19_06864at 134.273 kb on + strand, within MPMX19_06864at 134.274 kb on - strand, within MPMX19_06864at 134.274 kb on - strand, within MPMX19_06864at 134.274 kb on - strand, within MPMX19_06864at 134.274 kb on - strand, within MPMX19_06864at 134.274 kb on - strand, within MPMX19_06864at 134.274 kb on - strand, within MPMX19_06864at 134.274 kb on - strand, within MPMX19_06864at 134.274 kb on - strand, within MPMX19_06864

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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131,914 + MPMX19_06861 0.30 +1.1
131,914 + MPMX19_06861 0.30 -0.1
131,915 - MPMX19_06861 0.30 +0.1
131,915 - MPMX19_06861 0.30 -2.6
131,915 - MPMX19_06861 0.30 +0.4
132,163 + MPMX19_06861 0.48 -0.8
132,163 + MPMX19_06861 0.48 -0.1
132,163 + MPMX19_06861 0.48 -0.7
132,163 + MPMX19_06861 0.48 +1.5
132,164 - MPMX19_06861 0.48 -0.4
132,164 - MPMX19_06861 0.48 -0.1
132,352 + MPMX19_06861 0.61 -0.3
132,352 + MPMX19_06861 0.61 -1.9
132,353 - MPMX19_06861 0.61 -1.3
132,353 - MPMX19_06861 0.61 -1.9
132,418 + MPMX19_06861 0.66 -0.4
132,418 + MPMX19_06861 0.66 +0.0
132,418 + MPMX19_06861 0.66 -2.4
132,418 + MPMX19_06861 0.66 -1.1
132,419 - MPMX19_06861 0.66 -1.7
132,419 - MPMX19_06861 0.66 -0.3
132,419 - MPMX19_06861 0.66 -0.3
132,419 - MPMX19_06861 0.66 +0.1
132,419 - MPMX19_06861 0.66 -0.7
132,419 - MPMX19_06861 0.66 -1.0
132,419 - MPMX19_06861 0.66 -0.3
132,419 - MPMX19_06861 0.66 +0.1
132,419 - MPMX19_06861 0.66 -0.3
132,419 - MPMX19_06861 0.66 -0.8
132,688 + MPMX19_06861 0.85 -1.3
132,688 + MPMX19_06861 0.85 -2.4
132,689 - MPMX19_06861 0.86 -0.6
132,758 - +0.3
133,261 + MPMX19_06862 0.71 -1.2
133,261 + MPMX19_06862 0.71 -0.9
133,261 + MPMX19_06862 0.71 -1.7
133,261 + MPMX19_06862 0.71 +0.2
133,262 - MPMX19_06862 0.71 -0.9
133,262 - MPMX19_06862 0.71 -0.3
133,410 + -0.7
133,410 + -0.6
133,410 + -0.1
133,437 + -1.4
133,437 + +0.5
133,650 + MPMX19_06863 0.51 +0.4
133,650 + MPMX19_06863 0.51 -1.3
133,650 + MPMX19_06863 0.51 -0.7
133,650 + MPMX19_06863 0.51 +0.2
133,650 + MPMX19_06863 0.51 -0.1
133,725 + MPMX19_06863 0.67 -1.1
133,725 + MPMX19_06863 0.67 +0.5
133,726 - MPMX19_06863 0.67 -1.7
133,836 + +1.1
133,837 - +1.4
133,927 - -0.1
134,144 + -0.8
134,144 + -0.1
134,144 + +0.0
134,144 + -0.6
134,144 + -0.3
134,144 + -0.6
134,145 - +0.7
134,145 - +0.3
134,145 - -1.3
134,273 + MPMX19_06864 0.46 -1.3
134,273 + MPMX19_06864 0.46 -1.1
134,273 + MPMX19_06864 0.46 -0.1
134,273 + MPMX19_06864 0.46 +0.4
134,273 + MPMX19_06864 0.46 -0.7
134,273 + MPMX19_06864 0.46 +0.6
134,273 + MPMX19_06864 0.46 +2.2
134,273 + MPMX19_06864 0.46 -0.8
134,274 - MPMX19_06864 0.46 +0.1
134,274 - MPMX19_06864 0.46 +1.4
134,274 - MPMX19_06864 0.46 -0.2
134,274 - MPMX19_06864 0.46 -2.0
134,274 - MPMX19_06864 0.46 -0.5
134,274 - MPMX19_06864 0.46 +0.5
134,274 - MPMX19_06864 0.46 -0.5
134,274 - MPMX19_06864 0.46 -0.9

Or see this region's nucleotide sequence