Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06860

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06859 and MPMX19_06860 overlap by 4 nucleotidesMPMX19_06860 and MPMX19_06861 overlap by 4 nucleotides MPMX19_06859: MPMX19_06859 - Acetophenone carboxylase delta subunit, at 129,213 to 131,201 _06859 MPMX19_06860: MPMX19_06860 - hypothetical protein, at 131,198 to 131,506 _06860 MPMX19_06861: MPMX19_06861 - Hydrogen cyanide synthase subunit HcnB, at 131,503 to 132,888 _06861 Position (kb) 131 132Strain fitness (log2 ratio) -2 -1 0 1at 130.449 kb on + strand, within MPMX19_06859at 130.449 kb on + strand, within MPMX19_06859at 130.846 kb on - strand, within MPMX19_06859at 130.846 kb on - strand, within MPMX19_06859at 130.846 kb on - strand, within MPMX19_06859at 130.846 kb on - strand, within MPMX19_06859at 130.846 kb on - strand, within MPMX19_06859at 130.875 kb on + strand, within MPMX19_06859at 130.875 kb on + strand, within MPMX19_06859at 130.875 kb on + strand, within MPMX19_06859at 130.986 kb on + strand, within MPMX19_06859at 130.987 kb on - strand, within MPMX19_06859at 131.013 kb on + strandat 131.014 kb on - strandat 131.014 kb on - strandat 131.014 kb on - strandat 131.638 kb on + strandat 131.638 kb on + strandat 131.638 kb on + strandat 131.639 kb on - strandat 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.684 kb on - strand, within MPMX19_06861at 131.684 kb on - strand, within MPMX19_06861at 131.684 kb on - strand, within MPMX19_06861at 131.684 kb on - strand, within MPMX19_06861at 131.839 kb on + strand, within MPMX19_06861at 131.840 kb on - strand, within MPMX19_06861at 131.914 kb on + strand, within MPMX19_06861at 131.914 kb on + strand, within MPMX19_06861at 131.915 kb on - strand, within MPMX19_06861at 131.915 kb on - strand, within MPMX19_06861at 131.915 kb on - strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.164 kb on - strand, within MPMX19_06861at 132.164 kb on - strand, within MPMX19_06861at 132.352 kb on + strand, within MPMX19_06861at 132.352 kb on + strand, within MPMX19_06861at 132.353 kb on - strand, within MPMX19_06861at 132.353 kb on - strand, within MPMX19_06861at 132.418 kb on + strand, within MPMX19_06861at 132.418 kb on + strand, within MPMX19_06861at 132.418 kb on + strand, within MPMX19_06861at 132.418 kb on + strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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130,449 + MPMX19_06859 0.62 -0.5
130,449 + MPMX19_06859 0.62 -0.1
130,846 - MPMX19_06859 0.82 -0.1
130,846 - MPMX19_06859 0.82 -0.7
130,846 - MPMX19_06859 0.82 +0.4
130,846 - MPMX19_06859 0.82 +0.4
130,846 - MPMX19_06859 0.82 -0.2
130,875 + MPMX19_06859 0.84 +0.7
130,875 + MPMX19_06859 0.84 -0.0
130,875 + MPMX19_06859 0.84 +1.7
130,986 + MPMX19_06859 0.89 -0.9
130,987 - MPMX19_06859 0.89 +0.4
131,013 + +0.1
131,014 - -1.7
131,014 - -0.2
131,014 - -2.7
131,638 + +0.0
131,638 + -1.4
131,638 + -0.7
131,639 - -0.9
131,683 + MPMX19_06861 0.13 +1.7
131,683 + MPMX19_06861 0.13 +0.3
131,683 + MPMX19_06861 0.13 -0.1
131,683 + MPMX19_06861 0.13 +0.1
131,683 + MPMX19_06861 0.13 -0.9
131,683 + MPMX19_06861 0.13 +0.3
131,683 + MPMX19_06861 0.13 +0.5
131,684 - MPMX19_06861 0.13 +1.2
131,684 - MPMX19_06861 0.13 -0.6
131,684 - MPMX19_06861 0.13 -1.5
131,684 - MPMX19_06861 0.13 -0.4
131,839 + MPMX19_06861 0.24 -2.1
131,840 - MPMX19_06861 0.24 +0.3
131,914 + MPMX19_06861 0.30 +1.1
131,914 + MPMX19_06861 0.30 -0.1
131,915 - MPMX19_06861 0.30 +0.1
131,915 - MPMX19_06861 0.30 -2.6
131,915 - MPMX19_06861 0.30 +0.4
132,163 + MPMX19_06861 0.48 -0.8
132,163 + MPMX19_06861 0.48 -0.1
132,163 + MPMX19_06861 0.48 -0.7
132,163 + MPMX19_06861 0.48 +1.5
132,164 - MPMX19_06861 0.48 -0.4
132,164 - MPMX19_06861 0.48 -0.1
132,352 + MPMX19_06861 0.61 -0.3
132,352 + MPMX19_06861 0.61 -1.9
132,353 - MPMX19_06861 0.61 -1.3
132,353 - MPMX19_06861 0.61 -1.9
132,418 + MPMX19_06861 0.66 -0.4
132,418 + MPMX19_06861 0.66 +0.0
132,418 + MPMX19_06861 0.66 -2.4
132,418 + MPMX19_06861 0.66 -1.1
132,419 - MPMX19_06861 0.66 -1.7
132,419 - MPMX19_06861 0.66 -0.3
132,419 - MPMX19_06861 0.66 -0.3
132,419 - MPMX19_06861 0.66 +0.1
132,419 - MPMX19_06861 0.66 -0.7
132,419 - MPMX19_06861 0.66 -1.0
132,419 - MPMX19_06861 0.66 -0.3
132,419 - MPMX19_06861 0.66 +0.1
132,419 - MPMX19_06861 0.66 -0.3
132,419 - MPMX19_06861 0.66 -0.8

Or see this region's nucleotide sequence