Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06858

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06857 and MPMX19_06858 are separated by 248 nucleotidesMPMX19_06858 and MPMX19_06859 are separated by 5 nucleotides MPMX19_06857: MPMX19_06857 - Monomeric sarcosine oxidase, at 125,735 to 126,898 _06857 MPMX19_06858: MPMX19_06858 - Acetophenone carboxylase gamma subunit, at 127,147 to 129,207 _06858 MPMX19_06859: MPMX19_06859 - Acetophenone carboxylase delta subunit, at 129,213 to 131,201 _06859 Position (kb) 127 128 129 130Strain fitness (log2 ratio) -2 -1 0 1 2at 126.165 kb on + strand, within MPMX19_06857at 126.165 kb on + strand, within MPMX19_06857at 126.165 kb on + strand, within MPMX19_06857at 126.165 kb on + strand, within MPMX19_06857at 126.252 kb on + strand, within MPMX19_06857at 126.252 kb on + strand, within MPMX19_06857at 126.253 kb on - strand, within MPMX19_06857at 126.253 kb on - strand, within MPMX19_06857at 126.253 kb on - strand, within MPMX19_06857at 126.601 kb on - strand, within MPMX19_06857at 126.601 kb on - strand, within MPMX19_06857at 126.601 kb on - strand, within MPMX19_06857at 126.744 kb on + strand, within MPMX19_06857at 126.745 kb on - strand, within MPMX19_06857at 126.890 kb on - strandat 126.890 kb on - strandat 127.022 kb on + strandat 127.022 kb on + strandat 127.022 kb on + strandat 127.022 kb on + strandat 127.023 kb on - strandat 127.023 kb on - strandat 127.023 kb on - strandat 127.023 kb on - strandat 127.038 kb on + strandat 127.038 kb on + strandat 127.039 kb on - strandat 127.039 kb on - strandat 127.039 kb on - strandat 127.039 kb on - strandat 127.039 kb on - strandat 127.049 kb on + strandat 127.049 kb on + strandat 127.049 kb on + strandat 127.049 kb on + strandat 127.049 kb on + strandat 127.049 kb on + strandat 127.049 kb on + strandat 127.049 kb on + strandat 127.049 kb on + strandat 127.050 kb on - strandat 127.050 kb on - strandat 127.050 kb on - strandat 127.050 kb on - strandat 127.050 kb on - strandat 127.073 kb on + strandat 127.073 kb on + strandat 127.073 kb on + strandat 127.074 kb on - strandat 127.074 kb on - strandat 127.074 kb on - strandat 127.074 kb on - strandat 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.769 kb on - strand, within MPMX19_06858at 127.801 kb on + strand, within MPMX19_06858at 127.801 kb on + strand, within MPMX19_06858at 127.801 kb on + strand, within MPMX19_06858at 127.801 kb on + strand, within MPMX19_06858at 127.801 kb on + strand, within MPMX19_06858at 127.801 kb on + strand, within MPMX19_06858at 127.801 kb on + strand, within MPMX19_06858at 127.801 kb on + strand, within MPMX19_06858at 127.802 kb on - strand, within MPMX19_06858at 127.802 kb on - strand, within MPMX19_06858at 127.802 kb on - strand, within MPMX19_06858at 127.802 kb on - strand, within MPMX19_06858at 128.239 kb on + strand, within MPMX19_06858at 128.745 kb on + strand, within MPMX19_06858at 128.745 kb on + strand, within MPMX19_06858at 128.785 kb on + strand, within MPMX19_06858at 128.800 kb on + strand, within MPMX19_06858at 128.800 kb on + strand, within MPMX19_06858at 128.801 kb on - strand, within MPMX19_06858at 128.801 kb on - strand, within MPMX19_06858at 128.883 kb on + strand, within MPMX19_06858at 128.893 kb on + strand, within MPMX19_06858at 128.894 kb on - strand, within MPMX19_06858at 128.900 kb on + strand, within MPMX19_06858at 129.064 kb on + strandat 129.064 kb on + strandat 129.065 kb on - strandat 129.065 kb on - strandat 129.065 kb on - strandat 129.223 kb on + strandat 129.224 kb on + strandat 129.224 kb on + strandat 129.224 kb on + strandat 129.224 kb on + strandat 129.225 kb on - strandat 129.225 kb on - strandat 129.225 kb on - strandat 129.225 kb on - strandat 129.225 kb on - strandat 129.415 kb on - strand, within MPMX19_06859at 129.415 kb on - strand, within MPMX19_06859at 129.415 kb on - strand, within MPMX19_06859at 129.415 kb on - strand, within MPMX19_06859at 129.445 kb on - strand, within MPMX19_06859at 129.480 kb on + strand, within MPMX19_06859at 129.480 kb on + strand, within MPMX19_06859at 129.480 kb on + strand, within MPMX19_06859at 129.537 kb on + strand, within MPMX19_06859at 129.537 kb on + strand, within MPMX19_06859at 129.538 kb on - strand, within MPMX19_06859at 129.538 kb on - strand, within MPMX19_06859at 129.538 kb on - strand, within MPMX19_06859at 129.538 kb on - strand, within MPMX19_06859at 129.743 kb on + strand, within MPMX19_06859at 129.928 kb on - strand, within MPMX19_06859at 130.098 kb on + strand, within MPMX19_06859at 130.098 kb on + strand, within MPMX19_06859at 130.098 kb on + strand, within MPMX19_06859at 130.098 kb on + strand, within MPMX19_06859at 130.098 kb on + strand, within MPMX19_06859at 130.098 kb on + strand, within MPMX19_06859at 130.099 kb on - strand, within MPMX19_06859at 130.099 kb on - strand, within MPMX19_06859at 130.099 kb on - strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.101 kb on + strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.102 kb on - strand, within MPMX19_06859at 130.110 kb on + strand, within MPMX19_06859at 130.110 kb on + strand, within MPMX19_06859at 130.110 kb on + strand, within MPMX19_06859at 130.110 kb on + strand, within MPMX19_06859at 130.110 kb on + strand, within MPMX19_06859at 130.110 kb on + strand, within MPMX19_06859at 130.110 kb on + strand, within MPMX19_06859at 130.111 kb on - strand, within MPMX19_06859at 130.111 kb on - strand, within MPMX19_06859at 130.111 kb on - strand, within MPMX19_06859at 130.111 kb on - strand, within MPMX19_06859at 130.111 kb on - strand, within MPMX19_06859

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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126,165 + MPMX19_06857 0.37 -1.0
126,165 + MPMX19_06857 0.37 +0.7
126,165 + MPMX19_06857 0.37 -0.3
126,165 + MPMX19_06857 0.37 +1.4
126,252 + MPMX19_06857 0.44 -1.2
126,252 + MPMX19_06857 0.44 -1.1
126,253 - MPMX19_06857 0.45 -0.5
126,253 - MPMX19_06857 0.45 +0.4
126,253 - MPMX19_06857 0.45 +0.7
126,601 - MPMX19_06857 0.74 -0.0
126,601 - MPMX19_06857 0.74 +1.7
126,601 - MPMX19_06857 0.74 +0.1
126,744 + MPMX19_06857 0.87 -0.3
126,745 - MPMX19_06857 0.87 +0.6
126,890 - -1.7
126,890 - -0.1
127,022 + +1.0
127,022 + -0.3
127,022 + +0.1
127,022 + +0.3
127,023 - +1.7
127,023 - -0.1
127,023 - -0.6
127,023 - +1.3
127,038 + +0.4
127,038 + +0.7
127,039 - +1.5
127,039 - -2.0
127,039 - +0.2
127,039 - +1.3
127,039 - -0.6
127,049 + -0.7
127,049 + -1.1
127,049 + +1.4
127,049 + -2.5
127,049 + -1.9
127,049 + -0.1
127,049 + -0.3
127,049 + +0.9
127,049 + -1.3
127,050 - -1.9
127,050 - -1.1
127,050 - +0.1
127,050 - +0.1
127,050 - -0.3
127,073 + -0.5
127,073 + +0.4
127,073 + +0.7
127,074 - -0.1
127,074 - -1.9
127,074 - -2.6
127,074 - -0.9
127,480 + MPMX19_06858 0.16 +0.7
127,480 + MPMX19_06858 0.16 -1.1
127,480 + MPMX19_06858 0.16 -0.5
127,480 + MPMX19_06858 0.16 -0.0
127,480 + MPMX19_06858 0.16 -0.8
127,480 + MPMX19_06858 0.16 +0.5
127,480 + MPMX19_06858 0.16 -0.1
127,480 + MPMX19_06858 0.16 +0.8
127,480 + MPMX19_06858 0.16 -1.3
127,480 + MPMX19_06858 0.16 -2.7
127,480 + MPMX19_06858 0.16 +0.6
127,480 + MPMX19_06858 0.16 +0.3
127,480 + MPMX19_06858 0.16 +0.5
127,481 - MPMX19_06858 0.16 +1.0
127,481 - MPMX19_06858 0.16 +1.4
127,481 - MPMX19_06858 0.16 -1.5
127,481 - MPMX19_06858 0.16 +0.6
127,481 - MPMX19_06858 0.16 +0.4
127,481 - MPMX19_06858 0.16 -0.4
127,481 - MPMX19_06858 0.16 -1.2
127,481 - MPMX19_06858 0.16 -1.9
127,481 - MPMX19_06858 0.16 +0.4
127,481 - MPMX19_06858 0.16 -0.5
127,481 - MPMX19_06858 0.16 -0.7
127,481 - MPMX19_06858 0.16 -1.7
127,769 - MPMX19_06858 0.30 -0.3
127,801 + MPMX19_06858 0.32 +0.1
127,801 + MPMX19_06858 0.32 -0.0
127,801 + MPMX19_06858 0.32 -1.0
127,801 + MPMX19_06858 0.32 -0.3
127,801 + MPMX19_06858 0.32 +0.1
127,801 + MPMX19_06858 0.32 +0.7
127,801 + MPMX19_06858 0.32 -1.6
127,801 + MPMX19_06858 0.32 +0.1
127,802 - MPMX19_06858 0.32 +0.3
127,802 - MPMX19_06858 0.32 -0.8
127,802 - MPMX19_06858 0.32 -0.1
127,802 - MPMX19_06858 0.32 -1.7
128,239 + MPMX19_06858 0.53 +0.4
128,745 + MPMX19_06858 0.78 +0.8
128,745 + MPMX19_06858 0.78 +0.1
128,785 + MPMX19_06858 0.79 -0.3
128,800 + MPMX19_06858 0.80 +0.0
128,800 + MPMX19_06858 0.80 -0.8
128,801 - MPMX19_06858 0.80 -1.2
128,801 - MPMX19_06858 0.80 -0.0
128,883 + MPMX19_06858 0.84 -0.7
128,893 + MPMX19_06858 0.85 -0.0
128,894 - MPMX19_06858 0.85 -0.1
128,900 + MPMX19_06858 0.85 -1.6
129,064 + -1.5
129,064 + +0.7
129,065 - +1.7
129,065 - -1.7
129,065 - -1.4
129,223 + -0.7
129,224 + +1.3
129,224 + -2.5
129,224 + -1.0
129,224 + +1.3
129,225 - -1.1
129,225 - +0.4
129,225 - -1.7
129,225 - -0.1
129,225 - +0.9
129,415 - MPMX19_06859 0.10 -0.2
129,415 - MPMX19_06859 0.10 -0.4
129,415 - MPMX19_06859 0.10 -0.6
129,415 - MPMX19_06859 0.10 -1.4
129,445 - MPMX19_06859 0.12 -2.2
129,480 + MPMX19_06859 0.13 +0.5
129,480 + MPMX19_06859 0.13 -1.9
129,480 + MPMX19_06859 0.13 -0.9
129,537 + MPMX19_06859 0.16 -0.2
129,537 + MPMX19_06859 0.16 -0.9
129,538 - MPMX19_06859 0.16 +1.1
129,538 - MPMX19_06859 0.16 +2.0
129,538 - MPMX19_06859 0.16 +0.5
129,538 - MPMX19_06859 0.16 +0.6
129,743 + MPMX19_06859 0.27 +0.1
129,928 - MPMX19_06859 0.36 +0.6
130,098 + MPMX19_06859 0.44 +1.7
130,098 + MPMX19_06859 0.44 -0.7
130,098 + MPMX19_06859 0.44 -0.5
130,098 + MPMX19_06859 0.44 -0.6
130,098 + MPMX19_06859 0.44 +0.3
130,098 + MPMX19_06859 0.44 -1.5
130,099 - MPMX19_06859 0.45 -0.7
130,099 - MPMX19_06859 0.45 -0.4
130,099 - MPMX19_06859 0.45 +0.0
130,101 + MPMX19_06859 0.45 -0.4
130,101 + MPMX19_06859 0.45 -1.2
130,101 + MPMX19_06859 0.45 +1.0
130,101 + MPMX19_06859 0.45 -0.5
130,101 + MPMX19_06859 0.45 -0.4
130,101 + MPMX19_06859 0.45 -0.7
130,101 + MPMX19_06859 0.45 -0.9
130,101 + MPMX19_06859 0.45 -0.6
130,101 + MPMX19_06859 0.45 -0.6
130,101 + MPMX19_06859 0.45 -0.9
130,101 + MPMX19_06859 0.45 -1.7
130,101 + MPMX19_06859 0.45 -0.9
130,101 + MPMX19_06859 0.45 -1.7
130,102 - MPMX19_06859 0.45 +0.5
130,102 - MPMX19_06859 0.45 -1.1
130,102 - MPMX19_06859 0.45 -1.7
130,102 - MPMX19_06859 0.45 +0.5
130,102 - MPMX19_06859 0.45 -0.3
130,102 - MPMX19_06859 0.45 -2.3
130,102 - MPMX19_06859 0.45 -1.5
130,102 - MPMX19_06859 0.45 +2.2
130,102 - MPMX19_06859 0.45 -1.5
130,102 - MPMX19_06859 0.45 -0.9
130,102 - MPMX19_06859 0.45 -0.5
130,102 - MPMX19_06859 0.45 -0.2
130,102 - MPMX19_06859 0.45 +0.0
130,102 - MPMX19_06859 0.45 +0.3
130,102 - MPMX19_06859 0.45 -1.3
130,110 + MPMX19_06859 0.45 -0.9
130,110 + MPMX19_06859 0.45 -0.3
130,110 + MPMX19_06859 0.45 -1.6
130,110 + MPMX19_06859 0.45 +0.0
130,110 + MPMX19_06859 0.45 -0.6
130,110 + MPMX19_06859 0.45 +0.3
130,110 + MPMX19_06859 0.45 -0.6
130,111 - MPMX19_06859 0.45 -0.1
130,111 - MPMX19_06859 0.45 +0.1
130,111 - MPMX19_06859 0.45 -0.4
130,111 - MPMX19_06859 0.45 -0.4
130,111 - MPMX19_06859 0.45 -1.3

Or see this region's nucleotide sequence