Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06844

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06843 and MPMX19_06844 are separated by 251 nucleotidesMPMX19_06844 and MPMX19_06845 are separated by 13 nucleotides MPMX19_06843: MPMX19_06843 - hypothetical protein, at 109,766 to 110,500 _06843 MPMX19_06844: MPMX19_06844 - Putrescine--pyruvate aminotransferase, at 110,752 to 112,128 _06844 MPMX19_06845: MPMX19_06845 - hypothetical protein, at 112,142 to 113,011 _06845 Position (kb) 110 111 112 113Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 109.884 kb on + strand, within MPMX19_06843at 109.885 kb on - strand, within MPMX19_06843at 109.885 kb on - strand, within MPMX19_06843at 109.885 kb on - strand, within MPMX19_06843at 109.959 kb on + strand, within MPMX19_06843at 110.163 kb on + strand, within MPMX19_06843at 110.164 kb on - strand, within MPMX19_06843at 110.248 kb on - strand, within MPMX19_06843at 110.292 kb on + strand, within MPMX19_06843at 110.292 kb on + strand, within MPMX19_06843at 110.337 kb on + strand, within MPMX19_06843at 110.337 kb on + strand, within MPMX19_06843at 110.337 kb on + strand, within MPMX19_06843at 110.472 kb on + strandat 110.473 kb on - strandat 110.473 kb on - strandat 110.473 kb on - strandat 110.473 kb on - strandat 110.864 kb on + strandat 110.864 kb on + strandat 111.113 kb on + strand, within MPMX19_06844at 111.113 kb on + strand, within MPMX19_06844at 111.114 kb on - strand, within MPMX19_06844at 111.164 kb on + strand, within MPMX19_06844at 111.164 kb on + strand, within MPMX19_06844at 111.164 kb on + strand, within MPMX19_06844at 111.164 kb on + strand, within MPMX19_06844at 111.165 kb on - strand, within MPMX19_06844at 111.165 kb on - strand, within MPMX19_06844at 111.165 kb on - strand, within MPMX19_06844at 111.165 kb on - strand, within MPMX19_06844at 111.170 kb on + strand, within MPMX19_06844at 111.170 kb on + strand, within MPMX19_06844at 111.170 kb on + strand, within MPMX19_06844at 111.170 kb on + strand, within MPMX19_06844at 111.171 kb on - strand, within MPMX19_06844at 111.171 kb on - strand, within MPMX19_06844at 111.171 kb on - strand, within MPMX19_06844at 111.171 kb on - strand, within MPMX19_06844at 111.213 kb on + strand, within MPMX19_06844at 111.214 kb on - strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.218 kb on + strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.219 kb on - strand, within MPMX19_06844at 111.257 kb on + strand, within MPMX19_06844at 111.257 kb on + strand, within MPMX19_06844at 111.258 kb on - strand, within MPMX19_06844at 111.258 kb on - strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.467 kb on + strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.468 kb on - strand, within MPMX19_06844at 111.581 kb on + strand, within MPMX19_06844at 111.581 kb on + strand, within MPMX19_06844at 111.582 kb on - strand, within MPMX19_06844at 111.582 kb on - strand, within MPMX19_06844at 111.684 kb on - strand, within MPMX19_06844at 111.740 kb on + strand, within MPMX19_06844at 111.740 kb on + strand, within MPMX19_06844at 111.741 kb on - strand, within MPMX19_06844at 111.743 kb on + strand, within MPMX19_06844at 111.797 kb on + strand, within MPMX19_06844at 111.797 kb on + strand, within MPMX19_06844at 111.797 kb on + strand, within MPMX19_06844at 111.797 kb on + strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.798 kb on - strand, within MPMX19_06844at 111.879 kb on - strand, within MPMX19_06844at 111.944 kb on + strand, within MPMX19_06844at 112.067 kb on + strandat 112.806 kb on + strand, within MPMX19_06845at 112.807 kb on - strand, within MPMX19_06845at 112.999 kb on + strandat 112.999 kb on + strandat 113.000 kb on - strandat 113.000 kb on - strandat 113.000 kb on - strandat 113.000 kb on - strandat 113.127 kb on + strandat 113.127 kb on + strandat 113.127 kb on + strandat 113.128 kb on - strandat 113.128 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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109,884 + MPMX19_06843 0.16 -0.3
109,885 - MPMX19_06843 0.16 -0.5
109,885 - MPMX19_06843 0.16 -1.7
109,885 - MPMX19_06843 0.16 +0.3
109,959 + MPMX19_06843 0.26 +1.3
110,163 + MPMX19_06843 0.54 +0.2
110,164 - MPMX19_06843 0.54 +0.7
110,248 - MPMX19_06843 0.66 +0.1
110,292 + MPMX19_06843 0.72 -0.3
110,292 + MPMX19_06843 0.72 +0.4
110,337 + MPMX19_06843 0.78 +0.5
110,337 + MPMX19_06843 0.78 -1.0
110,337 + MPMX19_06843 0.78 +0.5
110,472 + -0.3
110,473 - +0.1
110,473 - -0.8
110,473 - -1.3
110,473 - -2.9
110,864 + -1.7
110,864 + +0.6
111,113 + MPMX19_06844 0.26 -2.3
111,113 + MPMX19_06844 0.26 +0.8
111,114 - MPMX19_06844 0.26 -1.5
111,164 + MPMX19_06844 0.30 -1.2
111,164 + MPMX19_06844 0.30 -0.9
111,164 + MPMX19_06844 0.30 -0.2
111,164 + MPMX19_06844 0.30 +1.4
111,165 - MPMX19_06844 0.30 -0.9
111,165 - MPMX19_06844 0.30 -0.1
111,165 - MPMX19_06844 0.30 +0.2
111,165 - MPMX19_06844 0.30 -1.1
111,170 + MPMX19_06844 0.30 -0.5
111,170 + MPMX19_06844 0.30 -0.0
111,170 + MPMX19_06844 0.30 -0.4
111,170 + MPMX19_06844 0.30 -2.1
111,171 - MPMX19_06844 0.30 -0.5
111,171 - MPMX19_06844 0.30 -0.6
111,171 - MPMX19_06844 0.30 -1.0
111,171 - MPMX19_06844 0.30 -1.0
111,213 + MPMX19_06844 0.33 -0.3
111,214 - MPMX19_06844 0.34 +0.7
111,218 + MPMX19_06844 0.34 -0.1
111,218 + MPMX19_06844 0.34 +0.1
111,218 + MPMX19_06844 0.34 -1.8
111,218 + MPMX19_06844 0.34 -1.2
111,218 + MPMX19_06844 0.34 +0.7
111,218 + MPMX19_06844 0.34 +0.6
111,218 + MPMX19_06844 0.34 +0.4
111,219 - MPMX19_06844 0.34 -1.5
111,219 - MPMX19_06844 0.34 -1.3
111,219 - MPMX19_06844 0.34 -0.2
111,219 - MPMX19_06844 0.34 -0.5
111,219 - MPMX19_06844 0.34 +0.3
111,219 - MPMX19_06844 0.34 +0.4
111,257 + MPMX19_06844 0.37 -1.1
111,257 + MPMX19_06844 0.37 -0.7
111,258 - MPMX19_06844 0.37 +0.5
111,258 - MPMX19_06844 0.37 -0.8
111,467 + MPMX19_06844 0.52 +0.7
111,467 + MPMX19_06844 0.52 -0.5
111,467 + MPMX19_06844 0.52 -1.3
111,467 + MPMX19_06844 0.52 +0.4
111,467 + MPMX19_06844 0.52 -0.2
111,468 - MPMX19_06844 0.52 -0.6
111,468 - MPMX19_06844 0.52 -0.1
111,468 - MPMX19_06844 0.52 +0.4
111,468 - MPMX19_06844 0.52 +0.9
111,468 - MPMX19_06844 0.52 -0.3
111,468 - MPMX19_06844 0.52 -0.1
111,468 - MPMX19_06844 0.52 -1.6
111,581 + MPMX19_06844 0.60 -1.6
111,581 + MPMX19_06844 0.60 -0.8
111,582 - MPMX19_06844 0.60 -0.3
111,582 - MPMX19_06844 0.60 +0.5
111,684 - MPMX19_06844 0.68 +0.5
111,740 + MPMX19_06844 0.72 -1.5
111,740 + MPMX19_06844 0.72 -1.3
111,741 - MPMX19_06844 0.72 -0.3
111,743 + MPMX19_06844 0.72 +0.9
111,797 + MPMX19_06844 0.76 -2.1
111,797 + MPMX19_06844 0.76 +2.0
111,797 + MPMX19_06844 0.76 +0.3
111,797 + MPMX19_06844 0.76 -2.4
111,798 - MPMX19_06844 0.76 +0.5
111,798 - MPMX19_06844 0.76 -1.2
111,798 - MPMX19_06844 0.76 -2.3
111,798 - MPMX19_06844 0.76 -1.2
111,798 - MPMX19_06844 0.76 -0.2
111,798 - MPMX19_06844 0.76 -0.4
111,798 - MPMX19_06844 0.76 -0.4
111,798 - MPMX19_06844 0.76 -0.9
111,798 - MPMX19_06844 0.76 -0.3
111,798 - MPMX19_06844 0.76 -1.0
111,879 - MPMX19_06844 0.82 -0.2
111,944 + MPMX19_06844 0.87 +0.7
112,067 + -0.6
112,806 + MPMX19_06845 0.76 +1.7
112,807 - MPMX19_06845 0.76 +0.5
112,999 + -0.7
112,999 + +1.2
113,000 - -1.1
113,000 - -1.1
113,000 - -0.1
113,000 - +0.2
113,127 + -0.1
113,127 + +0.9
113,127 + +0.3
113,128 - -0.3
113,128 - +0.7

Or see this region's nucleotide sequence